CA-3 - Complete Raw Mutation Data

Full TSV data with all sample columns and abundance information
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Complete Mutations Data

This table shows the complete data from the mutations.tsv file exactly as it appears in the source. Scroll horizontally to see all columns.

SRR33780220(5690350) SRR33780236(5713001) SRR33780261(6160035) SRR33780299(8182230) SRR33896779(5360986) SRR33896826(5175393) SRR33896867(4770845) SRR33976442(4826023) SRR33993957(2780398) SRR33993974(2688352) SRR33994039(2432400) SRR33994073(3040275) SRR34276684(2948439) SRR34289335(2984820) SRR34289344(3164429) SRR34289346(3189460) SRR34289404(3142191) SRR34450722(3652025) SRR34450727(2797105) SRR34450730(3464971) SRR34495465(2526020) SRR34495480(2463490) SRR34495503(3055674) SRR34495546(2711797) SRR34495560(2947495) SRR34495577(2388032) SRR34531311(3839063) SRR34531335(2659056) SRR34592520(2872031) SRR34592561(3082210) SRR34592628(1978342) SRR34592636(2599699) SRR34736309(6400034) SRR34736322(5844680) SRR34736370(6182104) SRR34736382(5836620)
"('2025-05-27', '14465')" "('2025-05-27', '13754')" "('2025-05-27', '16000')" "('2025-05-27', '15000')" "('2025-06-03', '16000')" "('2025-06-03', '14465')" "('2025-06-03', '15000')" "('2025-06-03', '13754')" "('2025-06-10', '13754')" "('2025-06-10', '14465')" "('2025-06-05', '16000')" "('2025-06-10', '15000')" "('2025-06-17', '14465')" "('2025-06-24', '16000')" "('2025-06-24', '14465')" "('2025-06-24', '13754')" "('2025-06-24', '15000')" "('2025-06-17', '15000')" "('2025-06-17', '16000')" "('2025-06-17', '13754')" "('2025-07-01', '15000')" "('2025-07-01', '14465')" "('2025-07-01', '13754')" "('2025-07-02', '13754')" "('2025-07-03', '14465')" "('2025-07-01', '16000')" "('2025-07-08', '15000')" "('2025-07-08', '16000')" "('2025-07-15', '15000')" "('2025-07-15', '14465')" "('2025-07-15', '13754')" "('2025-07-15', '16000')" "('2025-07-22', '15000')" "('2025-07-22', '16000')" "('2025-07-22', '13754')" "('2025-07-22', '14465')"
Sequences Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Total samples Positives Sum Negatives Sum Total Sum
linked 241 Delta C241T 27748 0.999 81278 0.999 20577 0.999 2 1.000 19502 0.998 37997 0.998 38915 0.998 25105 0.999 24328 0.999 13896 0.999 13593 0.998 35715 0.998 55462 0.998 14759 0.998 10098 0.999 21954 0.999 1747 0.999 38423 0.999 53844 0.999 34993 0.999 10457 0.999 4177 0.999 37719 0.999 25248 0.999 9388 0.999 5494 1.000 9862 0.997 42416 0.997 6767 0.998 29 6.990000000000000 21.971 28.961
309 A309T|(ORF1ab_polyprotein:A44T(Q15L))|(ORF1a_polyprotein:A44T(Q15L)) 6 0.000 65866 0.814 6 0.000 8 0.000 16 0.000 11 0.000 6 0.000 10 0.000 7 0.001 8 0.001 20 0.001 38 0.001 12 0.001 3 0.000 15 0.001 2 0.001 17 0.000 23 0.000 19 0.001 1 0.000 3 0.001 21 0.001 11 0.000 4 0.000 3 0.001 12 0.001 33 0.001 4 0.001 28 0.816 0.012000000000000000 0.828
507 A507G|(ORF1ab_polyprotein:A242G(H81R))|(ORF1a_polyprotein:A242G(H81R)) 1 0.010 190 0.995 2 1.005 0 1.005
518 A518G|(ORF1ab_polyprotein:A253G(M85V))|(ORF1a_polyprotein:A253G(M85V)) 4 0.333 1 0.333 0 0.333
521 G521T|(ORF1ab_polyprotein:G256T(V86F))|(ORF1a_polyprotein:G256T(V86F)) 4 0.333 1 0.333 0 0.333
521 GTT521-523del|(ORF1ab_polyprotein:256-258del(V86del))|(ORF1a_polyprotein:256-258del(V86del)) 2 0.019 191 1.000 8 0.163 3 1.182 0 1.182
linked 670 T670G|(ORF1ab_polyprotein:T405G(S135R))|(ORF1a_polyprotein:T405G(S135R)) 121 0.924 205 0.928 107 0.877 89 1.000 189 0.955 258 0.938 129 0.902 191 1.000 89 0.908 137 0.932 93 1.000 160 0.925 86 0.915 94 0.887 60 1.000 186 0.809 143 0.953 112 1.000 44 0.978 20 1.000 145 0.993 85 1.000 179 0.913 370 0.956 279 0.924 53 0.869 205 0.823 51 0.864 54 0.857 96 0.950 57 0.950 78 0.963 553 0.896 60 0.952 147 0.774 361 0.986 36 8.238000000000000 25.263000000000000 33.501
970 G970A|(ORF1ab_polyprotein:G705A(E235E))|(ORF1a_polyprotein:G705A(E235E)) 2 0.000 4 0.000 4 0.000 2 0.000 2 0.000 2 0.000 1 0.000 1 0.000 6 0.000 1 0.000 3 0.000 4 0.571 5 0.000 1 0.000 5 0.000 1 0.000 3 0.000 4 0.000 18 0.571 0.0 0.571
1084 T1084C|(ORF1ab_polyprotein:T819C(F273F))|(ORF1a_polyprotein:T819C(F273F)) 5 0.000 1 0.000 9 0.000 17 0.000 9 0.000 9 0.000 7 0.000 1 0.000 2 0.000 1 0.000 14 0.000 2 0.000 7 0.000 1 0.000 10 0.000 8 0.000 170837 0.997 3 0.000 14 0.000 1 0.000 9 0.000 4 0.000 4 0.000 1 0.000 7 0.000 7 0.000 4 0.000 26 0.000 28 0.997 0.0 0.997
1201 C1201T|(ORF1ab_polyprotein:C936T(C312C))|(ORF1a_polyprotein:C936T(C312C)) 1 0.000 6 0.000 7 0.000 2 0.000 3 0.000 2 0.000 1 0.000 6 0.000 1 0.000 1 0.000 1 0.000 4 0.000 1 0.000 6 0.000 2 0.000 6 0.000 1 0.000 4 0.000 1 0.000 7 0.000 2 0.000 10675 0.320 6 0.000 23 0.32 0.0 0.32
1387 RATG13 C1387T|(ORF1ab_polyprotein:C1122T(H374H))|(ORF1a_polyprotein:C1122T(H374H)) 631 0.889 1 0.008 2 0.889 0.008 0.897
1420 RATG13 C1420T|(ORF1ab_polyprotein:C1155T(A385A))|(ORF1a_polyprotein:C1155T(A385A)) 194 0.281 1 0.281 0 0.281
1426 RATG13 C1426T|(ORF1ab_polyprotein:C1161T(Y387Y))|(ORF1a_polyprotein:C1161T(Y387Y)) 627 0.883 1 0.883 0 0.883
1610 A1610T|(ORF1ab_polyprotein:A1345T(N449Y))|(ORF1a_polyprotein:A1345T(N449Y)) 9 0.000 6 0.000 15 0.000 6 0.000 8 0.000 9 0.000 1 0.000 2 0.000 2 0.000 2 0.000 3 0.000 22 0.000 1 0.500 2 0.000 4 0.000 2 0.000 1 0.000 35 0.000 5 0.000 5 0.000 12 0.000 21 0.5 0.0 0.5
2265 G2265A|(ORF1ab_polyprotein:G2000A(C667Y))|(ORF1a_polyprotein:G2000A(C667Y)) 6 0.000 3 0.000 1 0.000 7 0.000 4 0.000 1 0.000 7 0.000 1 0.000 1 0.000 2 0.000 3 0.000 2 0.000 13852 0.938 8825 0.701 2 0.000 1 0.000 1 0.000 16040 0.413 1 0.000 5 0.000 2 0.000 4 0.000 22 2.0520000000000000 0.0 2.0520000000000000
2509 RATG13 C2509T|(ORF1ab_polyprotein:C2244T(P748P))|(ORF1a_polyprotein:C2244T(P748P)) 11 0.000 7 0.000 6 0.000 3 0.000 1 0.000 1 0.000 1 0.000 1 0.000 1 0.000 1 0.000 2 0.000 5 0.000 898 0.060 1 0.000 1 0.000 1 0.000 1 0.000 1 0.000 3 0.000 6176 0.161 3 0.000 21 0.221 0.0 0.221
linked 2790 C2790T|(ORF1ab_polyprotein:C2525T(T842I))|(ORF1a_polyprotein:C2525T(T842I)) 22725 0.998 45434 0.998 53132 0.998 18278 0.996 34151 0.957 18489 0.996 10100 0.997 32230 0.998 19298 0.997 10308 0.998 5173 0.996 15023 0.998 69345 0.998 29515 0.997 17365 0.998 2117 0.997 8901 0.998 6712 0.998 2051 1.000 10552 0.997 5971 0.998 11234 0.998 13686 0.998 1994 0.998 18159 0.998 1 1.000 17454 0.997 26865 0.996 13548 0.996 29 7.98 20.909 28.889
2793 T2793A|(ORF1ab_polyprotein:T2528A(F843Y))|(ORF1a_polyprotein:T2528A(F843Y)) 7 0.000 5 0.000 2 0.000 1 0.000 1 0.000 5 0.000 1 0.000 8901 0.998 4945 0.735 5 0.000 3 0.000 1 0.000 12 1.733 0.0 1.733
3546 A3546C|(ORF1ab_polyprotein:A3281C(N1094T))|(ORF1a_polyprotein:A3281C(N1094T)) 1 0.000 3 0.001 3 0.000 3 0.000 15 0.001 16 0.001 2 0.000 4 0.000 5 0.000 33 0.001 8 0.001 1 1.000 18 0.001 1 0.000 1 0.000 1 0.001 7 0.001 2 0.000 2 0.000 9 0.000 36 0.001 21 1.0 0.009000000000000000 1.009
3568 T3568G|(ORF1ab_polyprotein:T3303G(G1101G))|(ORF1a_polyprotein:T3303G(G1101G)) 15 0.001 13 0.001 19 0.000 5 0.000 12 0.001 26 0.001 3 0.000 4 0.000 10 0.000 12 0.001 4 0.000 1 1.000 7 0.000 3 0.000 1 0.000 1 0.000 4 0.000 1 0.000 4 0.000 1 0.000 35 0.001 4 0.000 9 0.001 4 0.000 24 1.0020000000000000 0.005 1.0070000000000000
3569 A3569C|(ORF1ab_polyprotein:A3304C(S1102R))|(ORF1a_polyprotein:A3304C(S1102R)) 9 0.000 5 0.000 9 0.000 8 0.001 9 0.000 21 0.001 3 0.000 2 0.000 5 0.000 3 0.000 2 0.000 1 1.000 3 0.000 1 0.000 4 0.000 3 0.000 2 0.001 3 0.000 1 0.000 29 0.000 5 0.000 1 0.000 5 0.000 23 1.0 0.003 1.003
3588 A3588C|(ORF1ab_polyprotein:A3323C(H1108P))|(ORF1a_polyprotein:A3323C(H1108P)) 5 0.000 5 0.000 6 0.000 5 0.000 8 0.000 6 0.000 1 0.000 4 0.000 2 0.000 1 0.000 1 1.000 1 0.000 1 0.000 1 0.000 8 0.000 1 0.000 1 0.000 6 0.000 18 1.0 0.0 1.0
3592 T3592G|(ORF1ab_polyprotein:T3327G(N1109K))|(ORF1a_polyprotein:T3327G(N1109K)) 3 0.000 1 0.000 5 0.000 5 0.000 4 0.000 6 0.000 1 0.000 4 0.000 3 0.000 2 0.000 1 0.000 1 1.000 1 0.000 1 0.000 8 0.000 2 0.000 1 0.000 2 0.000 1 0.000 25 0.000 7 0.001 2 0.000 4 0.000 23 1.0 0.001 1.001
3594 T3594A|(ORF1ab_polyprotein:T3329A(L1110H))|(ORF1a_polyprotein:T3329A(L1110H)) 10 0.000 7 0.000 18 0.000 4 0.000 6 0.000 9 0.000 3 0.000 7 0.001 24 0.001 8 0.000 4 0.000 1 0.001 1 1.000 10 0.001 5 0.000 11 0.000 7 0.000 9 0.000 2 0.001 3 0.000 3 0.000 3 0.000 55 0.001 14 0.001 6 0.001 26 0.001 26 1.001 0.008 1.009
3630 T3630G|(ORF1ab_polyprotein:T3365G(V1122G))|(ORF1a_polyprotein:T3365G(V1122G)) 10 0.000 5 0.000 6 0.000 13 0.001 8 0.000 12 0.001 2 0.000 7 0.000 8 0.000 4 0.000 1 0.001 1 1.000 2 0.000 1 0.000 4 0.000 4 0.000 1 0.000 1 0.000 1 0.000 1 0.000 28 0.000 5 0.000 4 0.000 10 0.000 24 1.0 0.003 1.003
3636 A3636C|(ORF1ab_polyprotein:A3371C(K1124T))|(ORF1a_polyprotein:A3371C(K1124T)) 5 0.000 4 0.000 7 0.000 10 0.001 4 0.000 8 0.000 1 0.000 6 0.000 2 0.000 1 0.000 1 1.000 3 0.000 1 0.000 33 0.001 11 0.001 1 0.000 9 0.000 17 1.0 0.003 1.003
3639 G3639T|(ORF1ab_polyprotein:GGT3373-3375GTG(G1125V))|(ORF1a_polyprotein:GGT3373-3375GTG(G1125V)) 1 0.000 1 1.000 1 0.000 3 1.0 0 1.0
3640 T3640G|(ORF1ab_polyprotein:GGT3373-3375GTG(G1125V))|(ORF1a_polyprotein:GGT3373-3375GTG(G1125V)) 1 0.000 1 1.000 1 0.000 3 1.0 0 1.0
3649 T3649A|(ORF1ab_polyprotein:T3384A(I1128I))|(ORF1a_polyprotein:T3384A(I1128I)) 16 0.001 13 0.001 45 0.001 19 0.001 17 0.001 21 0.001 17 0.001 4 0.000 74 0.002 24 0.001 13 0.001 2 0.001 2 0.001 1 1.000 21 0.001 22 0.001 46 0.002 18 0.001 20 0.001 7 0.002 13 0.002 8 0.001 6 0.000 4 0.001 131 0.002 19 0.001 16 0.002 48 0.002 28 1.0080000000000000 0.024000000000000000 1.0320000000000000
3663 G3663T|(ORF1ab_polyprotein:AGT3397-3399ATG(S1133M))|(ORF1a_polyprotein:AGT3397-3399ATG(S1133M)) 1 0.000 1 1.000 1 0.000 3 1.0 0.0 1.0
3664 T3664G|(ORF1ab_polyprotein:AGT3397-3399ATG(S1133M))|(ORF1a_polyprotein:AGT3397-3399ATG(S1133M)) 1 0.000 1 1.000 1 0.000 3 1.0 0.0 1.0
3673 A3673C|(ORF1ab_polyprotein:A3408C(E1136D))|(ORF1a_polyprotein:A3408C(E1136D)) 3 0.000 2 0.000 9 0.000 18 0.001 9 0.000 22 0.001 4 0.000 3 0.000 7 0.000 8 0.000 7 0.001 1 1.000 2 0.000 3 0.000 4 0.000 3 0.000 1 0.000 3 0.000 1 0.000 2 0.000 24 0.000 9 0.001 11 0.000 23 1.001 0.003 1.0040000000000000
3677 T3677G|(ORF1ab_polyprotein:TTT3412-3414GAG(F1138E))|(ORF1a_polyprotein:TTT3412-3414GAG(F1138E)) 1 1.000 1 1.0 0 1.0
3678 T3678A|(ORF1ab_polyprotein:TTT3412-3414GAG(F1138E))|(ORF1a_polyprotein:TTT3412-3414GAG(F1138E)) 1 1.000 1 1.0 0 1.0
3679 T3679G|(ORF1ab_polyprotein:TTT3412-3414GAG(F1138E))|(ORF1a_polyprotein:TTT3412-3414GAG(F1138E)) 1 1.000 1 1.0 0 1.0
3685 G3685A|(ORF1ab_polyprotein:G3420A(Q1140Q))|(ORF1a_polyprotein:G3420A(Q1140Q)) 1 0.000 1 0.000 7 0.000 1 0.000 1 0.000 1 0.000 3 0.000 3 0.000 7 0.000 9839 0.996 1 0.000 11 0.996 0.0 0.996
linked 3686 C3686T|(ORF1ab_polyprotein:C3421T(H1141Y))|(ORF1a_polyprotein:C3421T(H1141Y)) 2 0.000 4 0.000 5785 0.367 8534 0.452 2 0.000 1477 0.102 10891 0.322 1 0.000 7998 0.701 2438 0.997 1 1.000 3 0.000 3192 0.215 9736 0.318 4764 0.253 6821 0.998 1800 0.491 1 0.000 17538 0.635 19 2.3740000000000000 4.477 6.851
3700 T3700G|(ORF1ab_polyprotein:T3435G(L1145L))|(ORF1a_polyprotein:T3435G(L1145L)) 9 0.000 5 0.000 13 0.000 16 0.001 16 0.001 17 0.001 2 0.000 2 0.000 14 0.000 12 0.001 4 0.000 1 1.000 2 0.000 3 0.000 4 0.000 2 0.000 2 0.000 5 0.001 2 0.000 4 0.000 39 0.001 7 0.001 6 0.001 12 0.000 24 1.001 0.007 1.0080000000000000
3701 G3701T|(ORF1ab_polyprotein:GCA3436-3438TCT(A1146S))|(ORF1a_polyprotein:GCA3436-3438TCT(A1146S)) 1 0.000 2 0.000 1 0.000 5 0.000 1 0.000 1 1.000 2 0.000 1 0.000 1 0.000 1 0.000 2 0.001 3 0.000 1 0.000 1 0.000 2 0.000 15 1.0 0.001 1.001
3703 A3703T|(ORF1ab_polyprotein:GCA3436-3438TCT(A1146S))|(ORF1a_polyprotein:GCA3436-3438TCT(A1146S)) 1 0.000 2 0.000 1 0.000 5 0.000 1 0.000 1 1.000 2 0.000 1 0.000 1 0.000 1 0.000 2 0.001 3 0.000 1 0.000 1 0.000 2 0.000 15 1.0 0.001 1.001
3706 A3706T|(ORF1ab_polyprotein:A3441T(P1147P))|(ORF1a_polyprotein:A3441T(P1147P)) 7 0.000 7 0.000 17 0.000 10 0.001 10 0.001 12 0.000 3 0.000 5 0.000 23 0.001 8 0.000 10 0.001 1 0.000 10 0.001 4 0.000 15 0.000 7 0.000 13 0.001 1 0.000 4 0.000 1 0.000 4 0.000 53 0.001 12 0.001 9984 0.989 20 0.001 25 0.99 0.008 0.998
3708 T3708A|(ORF1ab_polyprotein:T3443A(L1148*))|(ORF1a_polyprotein:T3443A(L1148*)) 11 0.000 22 0.001 23 0.001 18 0.001 13 0.001 24 0.001 12 0.001 12 0.001 41 0.001 25 0.001 11 0.001 2 0.001 3 0.002 1 1.000 17 0.001 9 0.001 13 0.000 12 0.001 8 0.000 1 0.000 5 0.001 2 0.000 5 0.000 1 0.000 87 0.001 9 0.001 7 0.001 18 0.001 28 1.0050000000000000 0.016000000000000000 1.0210000000000000
3710 T3710G|(ORF1ab_polyprotein:TTA3445-3447GGA(L1149G))|(ORF1a_polyprotein:TTA3445-3447GGA(L1149G)) 3 0.000 1 0.000 2 0.000 2 0.000 2 0.000 1 0.000 1 0.000 1 1.000 1 0.000 3 0.000 1 0.000 2 0.000 12 1.0 0.0 1.0
3711 T3711G|(ORF1ab_polyprotein:TTA3445-3447GGA(L1149G))|(ORF1a_polyprotein:TTA3445-3447GGA(L1149G)) 3 0.000 1 0.000 2 0.000 2 0.000 2 0.000 1 0.000 1 0.000 1 1.000 1 0.000 3 0.000 1 0.000 2 0.000 12 1.0 0.0 1.0
3721 T3721G|(ORF1ab_polyprotein:T3456G(G1152G))|(ORF1a_polyprotein:T3456G(G1152G)) 14 0.001 35 0.002 74 0.002 62 0.004 87 0.004 88 0.004 11 0.001 19 0.001 47 0.001 43 0.002 38 0.003 1 0.000 1 1.000 11 0.001 9 0.001 12 0.000 14 0.001 9 0.000 1 0.000 11 0.001 9 0.001 14 0.001 4 0.001 123 0.002 22 0.002 18 0.002 65 0.002 27 1.0100000000000000 0.03 1.0400000000000000
linked 4184 G4184A|(ORF1ab_polyprotein:G3919A(G1307S))|(ORF1a_polyprotein:G3919A(G1307S)) 63286 0.999 36121 0.999 20826 0.999 84024 0.998 17219 0.999 25470 0.999 39243 0.998 131161 0.998 16808 0.999 19873 0.999 30949 0.999 21151 0.999 3358 0.998 2760 0.997 11 1.000 15374 0.999 39687 0.998 23786 0.998 15614 0.998 4448 0.998 17437 0.999 22964 0.999 35208 0.999 3423 0.998 17715 0.997 33607 0.996 17424 0.648 56338 0.997 28 7.638000000000000 19.966000000000000 27.604000000000000
linked 4321 C4321T|(ORF1ab_polyprotein:C4056T(A1352A))|(ORF1a_polyprotein:C4056T(A1352A)) 63165 0.998 36040 0.998 20774 0.998 83685 0.997 17127 0.996 25408 0.996 39143 0.996 130371 0.996 16765 0.998 19801 0.997 30794 0.996 21076 0.996 3335 0.998 2754 0.999 11 1.000 15313 0.997 39579 0.997 23724 0.997 15571 0.997 4423 0.997 17359 0.998 22901 0.998 35013 0.998 3411 0.997 17536 0.996 33532 0.996 17381 0.647 56119 0.996 28 7.627 19.943000000000000 27.570000000000000
4336 A4336T|(ORF1ab_polyprotein:A4071T(P1357P))|(ORF1a_polyprotein:A4071T(P1357P)) 15 0.000 8 0.000 10 0.000 27 0.000 9 0.001 8 0.000 12 0.000 86 0.001 2 0.000 8 0.000 9 0.000 13 0.001 2 0.001 5 0.000 24063 0.606 16306 0.685 5 0.000 2 0.000 3 0.000 6 0.000 27301 0.778 1 0.000 5 0.000 20 0.001 15 0.001 31 0.001 26 2.0720000000000000 0.004 2.0760000000000000
4358 C4358A|(ORF1ab_polyprotein:C4093A(Q1365K))|(ORF1a_polyprotein:C4093A(Q1365K)) 6 0.000 4 0.000 7 0.000 18 0.000 5 0.000 7 0.000 4 0.000 94 0.001 7 0.000 8 0.000 11 0.000 8 0.000 1 0.000 4 0.000 24 0.001 6 0.000 7 0.000 4 0.001 10 0.001 2 0.000 9 0.000 1 0.000 11 0.001 12 0.000 9351 0.348 37 0.001 26 0.35 0.004 0.354
linked 4364 A4364C|(ORF1ab_polyprotein:A4099C(I1367L))|(ORF1a_polyprotein:A4099C(I1367L)) 31 0.000 16 0.000 24 0.001 90 0.001 16 0.001 39 0.002 65 0.002 65 0.000 16 0.001 10 0.001 18 0.001 18 0.001 2 0.001 1 0.091 6 0.000 9 0.000 4 0.000 7 0.000 2 0.000 8 0.000 8 0.000 11 0.000 3 0.001 22 0.001 30 0.001 9369 0.349 46 0.001 27 0.351 0.10500000000000000 0.45600000000000000
4379 T4379G|(ORF1ab_polyprotein:T4114G(S1372A))|(ORF1a_polyprotein:T4114G(S1372A)) 6 0.000 1 0.000 1 0.000 1 0.000 1 0.000 4 0.000 6 0.000 8 0.000 1 0.000 1 0.000 1 0.000 1 0.000 3 0.000 1 0.000 1 0.000 8 0.000 9346 0.348 12 0.000 18 0.348 0.0 0.348
linked 4489 4489-insertC|(ORF1ab_polyprotein:GGT4222-4224GGG(G1408G))|(ORF1a_polyprotein:GGT4222-4224GGG(G1408G)) 1 0.100 1 0.000 2 0.1 0 0.1
linked 4489 T4489G|(ORF1ab_polyprotein:GGT4222-4224GGG(G1408G))|(ORF1a_polyprotein:GGT4222-4224GGG(G1408G)) 1 0.100 1 0.000 2 0.1 0 0.1
linked 4490 A4490C|(ORF1ab_polyprotein:A4225C(I1409L))|(ORF1a_polyprotein:A4225C(I1409L)) 125 0.002 76 0.001 199 0.001 136 0.002 180 0.003 207 0.003 124 0.003 1 0.333 34 0.001 16 0.001 107 0.001 23 0.001 53 0.001 97 0.002 28 0.002 31 0.001 21 0.001 2 0.000 10 0.000 20 0.001 32 0.001 9 0.000 27 0.001 53 0.001 13 0.001 48 0.001 23 0.001 12 0.001 306 0.001 57 0.002 160 0.002 27 0.001 32 0.341 0.03200000000000000 0.37300000000000000
4497 T4497C|(ORF1ab_polyprotein:T4232C(I1411T))|(ORF1a_polyprotein:T4232C(I1411T)) 3 0.000 5 0.000 20 0.000 4 0.000 1 0.000 7 0.000 4 0.000 1 1.000 2 0.000 1 0.000 3 0.000 1 0.000 1 0.000 4 0.000 1 0.000 2 0.000 1 0.000 2 0.000 1 0.000 2 0.000 1 0.000 1 0.000 18 0.000 4 0.000 3 0.000 1 0.000 26 1.0 0.0 1.0
linked 4683 C4683T|(ORF1ab_polyprotein:C4418T(A1473V))|(ORF1a_polyprotein:C4418T(A1473V)) 3 0.000 4 0.000 45508 0.275 2 0.000 40184 0.623 41784 0.610 17893 0.420 5667 0.198 1 1.000 4 0.000 6895 0.186 21863 0.501 26702 0.603 25675 0.999 4588 0.998 2939 0.133 13161 0.393 2 0.000 1 0.000 36801 0.999 13730 0.276 3 0.000 23898 0.998 4525 0.370 12 0.000 8385 0.227 77681 0.901 12082 0.549 28 2.9260000000000000 8.333000000000000 11.259000000000000
4734 T4734C|(ORF1ab_polyprotein:T4469C(L1490P))|(ORF1a_polyprotein:T4469C(L1490P)) 14 0.000 10 0.000 38 0.000 17 0.000 10 0.000 12 0.000 12 0.000 3 0.000 16 0.000 3 0.000 3 0.000 2 0.000 4 0.000 2 0.000 1 0.000 2 0.000 5 0.000 2 0.000 2 0.000 2 0.000 4 0.000 8213 0.343 1 0.000 31 0.000 5 0.000 12 0.000 3 0.000 27 0.343 0.0 0.343
4838 A4838G|(ORF1ab_polyprotein:A4573G(I1525V))|(ORF1a_polyprotein:A4573G(I1525V)) 17 0.000 21 0.000 34 0.000 21 0.000 24 0.000 14 0.000 10 0.000 33659 0.707 8 0.000 7 0.000 3 0.000 6 0.000 11 0.000 4 0.000 4 0.000 13 0.000 8 0.000 8 0.000 2 0.000 4 0.000 5 0.000 1 0.000 8 0.000 8 0.000 1 0.000 43 0.000 5 0.000 7 0.000 12 0.000 29 0.707 0.0 0.707
4907 G4907T|(ORF1ab_polyprotein:G4642T(G1548C))|(ORF1a_polyprotein:G4642T(G1548C)) 42 0.000 80 0.001 78 0.000 137 0.001 140 0.001 81 0.001 97695 0.667 48 0.001 38 0.001 54 0.001 18 0.001 67 0.001 117 0.001 6 0.001 24 0.001 36 0.001 87 0.001 61 0.001 26 0.001 14 0.001 143 0.001 55 0.001 36 0.001 51 0.001 38 0.000 12 0.000 442 0.001 66 0.001 86 0.001 97 0.001 30 0.673 0.01900000000000000 0.6920000000000000
4944 T4944C|(ORF1ab_polyprotein:T4679C(L1560P))|(ORF1a_polyprotein:T4679C(L1560P)) 21 0.000 23 0.000 26 0.000 23 0.000 41 0.000 24 0.000 12 0.000 13185 0.275 5 0.000 3 0.000 14 0.000 15 0.000 1 0.000 3 0.000 3 0.000 8 0.000 7 0.000 13 0.000 3 0.000 20 0.000 3 0.000 4 0.000 12 0.000 13 0.000 3 0.000 78 0.000 15 0.000 20 0.000 16 0.000 29 0.275 0.0 0.275
linked 4999 C4999T|(ORF1ab_polyprotein:C4734T(N1578N))|(ORF1a_polyprotein:C4734T(N1578N)) 19220 0.174 7000 0.046 1 1.000 95817 0.493 86142 0.585 35094 0.224 60621 0.649 144628 0.998 5082 0.107 7981 0.138 2 0.000 1 0.000 9 0.000 4527 0.522 27 0.551 18538 0.396 70481 0.731 56249 0.728 17971 0.390 19229 0.776 41720 0.270 28146 0.476 43344 0.999 31057 0.348 69966 0.856 1 0.000 39 0.000 32557 0.541 32008 0.396 76488 0.751 30 3.8620000000000000 9.283 13.145
5190 T5190C|(ORF1ab_polyprotein:T4925C(F1642S))|(ORF1a_polyprotein:T4925C(F1642S)) 1 0.000 1 0.000 2 0.000 2 0.000 1 0.000 1 0.000 2 0.000 1 0.000 4 0.000 2 0.000 2 0.000 2 0.000 1 0.000 5327 0.215 14 0.215 0.0 0.215
5497 C5497T|(ORF1ab_polyprotein:C5232T(C1744C))|(ORF1a_polyprotein:C5232T(C1744C)) 3 0.000 1 0.000 6 0.000 5 0.000 2 0.000 4 0.000 2 0.000 1 0.000 14226 0.615 17645 0.641 1 0.000 1 0.000 1 0.000 2 0.000 9503 0.760 2 0.000 1 0.000 6 0.000 18 2.016 0.0 2.016
6040 C6040T|(ORF1ab_polyprotein:C5775T(F1925F))|(ORF1a_polyprotein:C5775T(F1925F)) 2 0.000 15 0.000 4 0.000 24 0.000 6 0.000 12 0.000 3 0.000 3 0.000 2 0.000 1 0.000 4 0.000 29788 0.603 5 0.000 3 0.000 2 0.000 2399 0.057 2 0.000 1 0.000 3 0.000 2 0.000 45547 0.996 3 0.000 5 0.000 23 1.656 0.0 1.656
6515 T6515C|(ORF1ab_polyprotein:T6250C(L2084L))|(ORF1a_polyprotein:T6250C(L2084L)) 12 0.000 6 0.000 3 0.000 11 0.000 3 0.000 13 0.000 5 0.000 4 0.000 6842 0.289 6 0.000 1 0.000 3 0.000 4 0.000 5 0.000 3 0.000 4 0.000 8 0.001 1 0.000 9 0.000 1 0.000 4 0.000 21 0.000 22 0.289 0.001 0.29
6558 C6558T|(ORF1ab_polyprotein:C6293T(A2098V))|(ORF1a_polyprotein:C6293T(A2098V)) 3 0.000 3 0.000 4 0.000 1 0.000 1 0.000 16954 0.263 1 0.000 1 0.000 2 0.000 1 0.000 1 0.000 1 0.000 1 0.000 1 0.000 4 0.000 15 0.263 0.0 0.263
6572 T6572C|(ORF1ab_polyprotein:T6307C(S2103P))|(ORF1a_polyprotein:T6307C(S2103P)) 1 0.000 1 0.000 1 0.000 1 0.000 703 0.224 1 0.000 1 0.000 1 0.000 3 0.000 9 0.224 0.0 0.224
6637 T6637G|(ORF1ab_polyprotein:T6372G(T2124T))|(ORF1a_polyprotein:T6372G(T2124T)) 2 0.000 2 0.000 3 0.001 4 0.001 5 0.000 2 0.001 2 0.000 1 0.000 3096 0.805 2444 0.789 1 0.000 1 0.000 1 0.000 1 0.000 3 0.000 15 1.594 0.003 1.597
6819 G6819T|(ORF1ab_polyprotein:G6554T(S2185I))|(ORF1a_polyprotein:G6554T(S2185I)) 1 0.000 3 0.000 2 0.000 2 0.000 9 0.001 1 0.000 3 0.001 5 0.001 6 0.000 2 0.001 1 0.001 1 0.000 1 0.000 9 0.002 2 0.001 4 0.001 3 0.001 1 1.000 10 0.001 19 1.0020000000000000 0.009000000000000000 1.0110000000000000
6823 A6823C|(ORF1ab_polyprotein:A6558C(T2186T))|(ORF1a_polyprotein:A6558C(T2186T)) 1 0.000 1 0.500 1 0.000 3 0.5 0.0 0.5
6823 A6823T|(ORF1ab_polyprotein:A6558T(T2186T))|(ORF1a_polyprotein:A6558T(T2186T)) 1 0.000 3 0.000 10 0.001 3 0.000 4 0.001 4 0.001 6 0.000 1 0.000 5 0.001 5 0.001 12 0.001 1 0.000 1 0.001 1 0.001 2 0.001 1 0.000 4 0.001 6 0.001 4 0.001 4 0.002 1 0.500 10 0.001 22 0.501 0.014000000000000000 0.515
6919 G6919T|(ORF1ab_polyprotein:G6654T(L2218F))|(ORF1a_polyprotein:G6654T(L2218F)) 74 0.001 26 0.001 205 0.001 138 0.001 95 0.001 91 0.001 20 0.001 492 0.003 149 0.003 59 0.002 106 0.003 188 0.002 210 0.002 71 0.002 133 0.002 34 0.002 33 0.002 1 1.000 5 0.006 60 0.002 60 0.003 60 0.002 42 0.002 201 0.002 35 0.001 83 0.002 28 0.001 102 0.002 374 0.002 46 0.002 30 1.0180000000000000 0.039000000000000000 1.0570000000000000
6923 T6923A|(ORF1ab_polyprotein:T6658A(S2220T))|(ORF1a_polyprotein:T6658A(S2220T)) 23 0.000 8 0.000 56 0.000 27 0.000 25 0.000 19 0.000 2 0.000 59 0.000 11 0.000 8 0.000 10 0.000 46 0.000 13 0.000 10 0.000 18 0.000 5 0.000 5 0.000 1 1.000 10 0.000 4 0.000 10 0.000 2 0.000 37 0.000 8 0.000 8 0.000 26 0.001 109 0.001 10 0.001 28 1.001 0.002 1.003
6931 T6931A|(ORF1ab_polyprotein:T6666A(N2222K))|(ORF1a_polyprotein:T6666A(N2222K)) 38 0.001 16 0.001 143 0.001 75 0.001 46 0.000 44 0.001 12 0.001 252 0.001 46 0.001 26 0.001 51 0.001 140 0.001 102 0.001 30 0.001 71 0.001 15 0.001 13 0.001 1 1.000 1 0.001 41 0.001 31 0.001 50 0.001 23 0.001 106 0.001 18 0.001 32 0.001 6 0.000 60 0.001 191 0.001 27 0.001 30 1.0080000000000000 0.01900000000000000 1.0270000000000000
6936 C6936A|(ORF1ab_polyprotein:C6671A(S2224Y))|(ORF1a_polyprotein:C6671A(S2224Y)) 74 0.001 27 0.001 174 0.001 122 0.001 98 0.001 72 0.001 23 0.001 392 0.002 72 0.001 46 0.002 71 0.002 121 0.001 109 0.001 45 0.001 73 0.001 23 0.001 16 0.001 1 1.000 33 0.001 37 0.002 61 0.002 22 0.001 116 0.001 30 0.001 43 0.001 18 0.001 92 0.002 272 0.002 31 0.002 29 1.0110000000000000 0.02500000000000000 1.0360000000000000
6941 C6941A|(ORF1ab_polyprotein:C6676A(L2226M))|(ORF1a_polyprotein:C6676A(L2226M)) 86 0.001 33 0.001 214 0.001 144 0.001 90 0.001 79 0.001 27 0.001 500 0.003 120 0.002 57 0.002 82 0.002 161 0.002 170 0.002 62 0.002 120 0.002 24 0.001 31 0.002 1 1.000 42 0.001 40 0.002 79 0.002 29 0.001 205 0.002 42 0.002 59 0.001 27 0.001 109 0.002 346 0.002 46 0.002 29 1.0140000000000000 0.031000000000000000 1.0450000000000000
6976 T6976G|(ORF1ab_polyprotein:T6711G(S2237R))|(ORF1a_polyprotein:T6711G(S2237R)) 55 0.001 26 0.001 53 0.000 165 0.001 188 0.002 93 0.001 32 0.002 154 0.001 13 0.000 17 0.001 14 0.000 95 0.001 80 0.001 26 0.001 45 0.001 9 0.000 15 0.001 1 1.000 4 0.000 5 0.000 9 0.000 4 0.000 81 0.001 7 0.000 24 0.001 13 0.001 40 0.001 187 0.001 11 0.001 29 1.0050000000000000 0.016 1.0210000000000000
6980 T6980G|(ORF1ab_polyprotein:TGC6715-6717GGG(C2239G))|(ORF1a_polyprotein:TGC6715-6717GGG(C2239G)) 2 0.000 3 0.000 5 0.000 6 0.000 1 0.000 1 0.000 1 0.000 4 0.000 4 0.000 3 0.000 1 1.000 1 0.000 1 0.000 10 0.000 14 1.0 0.0 1.0
6982 C6982G|(ORF1ab_polyprotein:TGC6715-6717GGG(C2239G))|(ORF1a_polyprotein:TGC6715-6717GGG(C2239G)) 2 0.000 3 0.000 5 0.000 6 0.000 1 0.000 1 0.000 1 0.000 4 0.000 4 0.000 3 0.000 1 1.000 1 0.000 1 0.000 10 0.000 14 1.0 0.0 1.0
6984 T6984A|(ORF1ab_polyprotein:T6719A(L2240Q))|(ORF1a_polyprotein:T6719A(L2240Q)) 15 0.000 42 0.000 16 0.000 14 0.000 7 0.000 6 0.000 63 0.000 19 0.000 8 0.000 15 0.000 42 0.000 41 0.000 15 0.000 21 0.000 4 0.000 1 0.000 1 1.000 10 0.000 5 0.000 8 0.000 4 0.000 37 0.000 2 0.000 13 0.000 4 0.000 11 0.000 54 0.000 2 0.000 28 1.0 0.0 1.0
6997 C6997A|(ORF1ab_polyprotein:C6732A(I2244I))|(ORF1a_polyprotein:C6732A(I2244I)) 69 0.001 20 0.001 178 0.001 105 0.001 122 0.001 116 0.002 26 0.001 429 0.002 146 0.003 67 0.002 100 0.002 142 0.001 160 0.002 58 0.002 83 0.001 23 0.001 14 0.001 1 1.000 2 0.002 43 0.001 43 0.002 68 0.002 28 0.001 158 0.002 36 0.001 47 0.001 28 0.001 81 0.002 335 0.002 37 0.002 30 1.0140000000000000 0.030000000000000000 1.0440000000000000
7000 C7000A|(ORF1ab_polyprotein:C6735A(Y2245*))|(ORF1a_polyprotein:C6735A(Y2245*)) 54 0.001 20 0.001 149 0.001 99 0.001 83 0.001 83 0.001 20 0.001 236 0.001 104 0.002 37 0.001 48 0.001 91 0.001 94 0.001 32 0.001 62 0.001 16 0.001 17 0.001 1 1.000 2 0.002 28 0.001 21 0.001 35 0.001 23 0.001 104 0.001 23 0.001 34 0.001 19 0.001 85 0.002 240 0.001 26 0.001 30 1.0090000000000000 0.02300000000000000 1.0320000000000000
7018 T7018G|(ORF1ab_polyprotein:T6753G(G2251G))|(ORF1a_polyprotein:T6753G(G2251G)) 42 0.001 13 0.000 97 0.000 76 0.001 126 0.001 105 0.001 26 0.001 87 0.000 49 0.001 18 0.001 31 0.001 91 0.001 117 0.001 66 0.002 102 0.002 5 0.000 7 0.000 1 1.000 4 0.000 7 0.000 17 0.000 7 0.000 66 0.001 15 0.001 27 0.001 19 0.001 61 0.001 252 0.001 17 0.001 29 1.005 0.016000000000000000 1.021
7025 A7025T|(ORF1ab_polyprotein:A6760T(M2254L))|(ORF1a_polyprotein:A6760T(M2254L)) 80 0.001 21 0.001 222 0.001 131 0.001 231 0.002 190 0.003 48 0.002 193 0.001 63 0.001 31 0.001 46 0.001 152 0.002 176 0.002 76 0.002 160 0.002 9 0.000 16 0.001 1 1.000 1 0.001 24 0.001 25 0.001 26 0.001 15 0.001 117 0.001 37 0.001 56 0.001 25 0.001 88 0.002 323 0.002 35 0.002 30 1.0100000000000000 0.029000000000000000 1.0390000000000000
linked 7085 A7085-7085del|(ORF1ab_polyprotein:6820-6820del(2274fs))|(ORF1a_polyprotein:6820-6820del(2274fs)) 1 0.000 2 0.000 1 0.000 2 0.000 2 0.000 1 0.000 1 0.000 19005 0.112 8 0.112 0.0 0.112
linked 7098 T7098G|(ORF1ab_polyprotein:T6833G(I2278S))|(ORF1a_polyprotein:T6833G(I2278S)) 100 0.001 51 0.002 266 0.001 190 0.001 220 0.002 213 0.003 48 0.002 139 0.001 46 0.001 18 0.001 33 0.001 85 0.001 113 0.001 32 0.001 96 0.001 17 0.001 10 0.001 1 0.001 17 0.001 8 0.000 17 0.000 13 0.001 64 0.001 14 0.001 49 0.001 16 0.001 94 0.002 266 0.002 38 0.002 29 0.009000000000000000 0.02600000000000000 0.03500000000000000
linked 7113 C7113T|(ORF1ab_polyprotein:C6848T(T2283I))|(ORF1a_polyprotein:C6848T(T2283I)) 48127 0.648 3 0.000 88865 0.445 55223 0.427 95898 0.996 64167 0.924 12797 0.640 179851 0.997 23308 0.431 16382 0.569 41169 0.998 1 1.000 95063 0.997 45707 0.500 32268 0.997 2 0.000 18180 0.997 19326 0.998 854 0.996 27225 0.882 21515 0.948 10680 0.310 8957 0.416 90080 0.997 1 1.000 1 0.000 33990 0.823 12948 0.674 35535 0.735 168901 0.995 16676 0.873 31 6.073 16.14 22.213
7267 RATG13 C7267T|(ORF1ab_polyprotein:C7002T(F2334F))|(ORF1a_polyprotein:C7002T(F2334F)) 1 0.000 2569 0.998 1689 0.817 1 0.001 1 0.000 5 1.815 0.001 1.8160000000000000
7603 A7603T|(ORF1ab_polyprotein:A7338T(K2446N))|(ORF1a_polyprotein:A7338T(K2446N)) 3 0.000 2 0.000 15 0.000 1 0.000 20 0.001 16 0.001 3 0.000 3 0.000 17 0.000 2 0.000 1 0.000 1 0.500 1 0.000 1 0.000 1 0.000 1 0.000 2 0.000 3 0.000 8 0.000 10 0.001 22 0.000 3 0.000 22 0.5 0.003 0.503
7632 A7632T|(ORF1ab_polyprotein:A7367T(D2456V))|(ORF1a_polyprotein:A7367T(D2456V)) 7 0.000 3 0.000 17 0.000 8 0.000 22 0.001 11 0.001 3 0.001 2 0.001 2 0.000 13 0.001 53 0.001 13 0.001 10 0.001 1 0.000 1 0.500 1 0.001 3 0.001 5 0.001 5 0.000 1 0.000 7 0.001 6 0.001 30 0.001 12 0.001 56 0.001 12 0.001 26 0.505 0.012000000000000000 0.517
7651 T7651G|(ORF1ab_polyprotein:T7386G(S2462R))|(ORF1a_polyprotein:T7386G(S2462R)) 7 0.000 3 0.000 14 0.000 8 0.000 38 0.002 13 0.001 3 0.001 5 0.001 10 0.001 30 0.001 10 0.001 4 0.000 4 0.000 1 0.500 1 0.000 1 0.000 4 0.000 7 0.001 3 0.000 5 0.001 23 0.001 15 0.001 51 0.001 13 0.001 24 0.503 0.011000000000000000 0.514
7653 C7653G|(ORF1ab_polyprotein:C7388G(T2463R))|(ORF1a_polyprotein:C7388G(T2463R)) 5 0.000 2 0.000 9 0.000 2 0.000 23 0.001 12 0.001 1 0.000 7 0.001 4 0.000 27 0.000 8 0.001 6 0.001 2 0.000 1 0.500 2 0.000 2 0.001 1 0.000 3 0.000 2 0.000 4 0.001 3 0.000 19 0.001 14 0.001 42 0.001 11 0.001 25 0.504 0.007 0.511
8251 C8251T|(ORF1ab_polyprotein:C7986T(D2662D))|(ORF1a_polyprotein:C7986T(D2662D)) 11 0.000 10 0.000 35 0.000 21 0.000 12 0.000 7 0.000 12 0.000 2 0.000 6 0.000 6 0.000 6 0.000 4 0.000 3 0.000 4 0.000 51814 0.743 35493 0.568 6 0.000 4 0.000 2 0.000 10 0.000 15292 0.317 2 0.000 3 0.000 8 0.000 2 0.000 25 1.6280000000000000 0.0 1.6280000000000000
linked 8293 C8293T|(ORF1ab_polyprotein:C8028T(T2676T))|(ORF1a_polyprotein:C8028T(T2676T)) 183039 0.997 81023 0.997 303584 0.997 158871 0.807 74996 0.994 49098 0.536 54426 0.634 24330 0.996 57469 0.918 4 0.000 1 1.000 55470 0.995 50746 0.576 234423 0.994 41864 0.554 63625 0.994 60802 0.997 2 1.000 523 0.994 52293 0.743 39132 0.620 82115 0.930 69290 0.996 1 1.000 35599 0.506 95169 0.996 15412 0.317 10313 0.402 1 1.000 37536 0.459 7 0.000 9448 0.300 32 4.227 20.022 24.249
linked 8393 G8393A|(ORF1ab_polyprotein:G8128A(A2710T))|(ORF1a_polyprotein:G8128A(A2710T)) 181927 0.997 80552 0.998 301689 0.998 157732 0.807 74173 0.997 48498 0.538 53874 0.636 24118 0.997 57047 0.919 4 0.000 1 1.000 54820 0.996 50210 0.577 232193 0.997 41292 0.555 62960 0.997 60222 0.996 2 1.000 516 0.998 51910 0.743 38599 0.616 81532 0.930 68804 0.997 1 1.000 35266 0.507 94559 0.998 15296 0.318 10256 0.403 1 1.000 36954 0.460 7 0.000 9329 0.302 32 4.227 20.050000000000000 24.277000000000000
8597 C8597T|(ORF1ab_polyprotein:C8332T(L2778F))|(ORF1a_polyprotein:C8332T(L2778F)) 1 0.000 1 0.000 608 0.266 1 0.000 3 0.000 3 0.001 4 0.000 7 0.266 0.001 0.267
8683 RATG13 C8683T|(ORF1ab_polyprotein:C8418T(I2806I))|(ORF1a_polyprotein:C8418T(I2806I)) 1 0.000 493 0.218 1 0.000 3 0.218 0.0 0.218
9142 C9142-9142del|(ORF1ab_polyprotein:8877-8877del(2959fs))|(ORF1a_polyprotein:8877-8877del(2959fs)) 472 0.279 1 0.279 0 0.279
linked 9344 C9344T|(ORF1ab_polyprotein:C9079T(L3027F))|(ORF1a_polyprotein:C9079T(L3027F)) 40781 0.998 28531 0.998 32862 0.998 21700 0.998 27309 0.997 23315 0.998 13627 0.998 10818 0.998 12985 0.998 15368 0.998 15885 0.997 9936 0.999 33755 0.998 14888 0.998 4183 0.998 6970 0.998 710 0.997 1983 0.999 21582 0.998 22913 0.998 26746 0.998 13598 0.998 13131 0.998 26559 0.999 35023 0.998 7791 0.998 1793 0.997 1 1.000 10361 0.998 55634 0.864 16623 0.997 31 6.852000000000000 23.952 30.804000000000000
9568 A9568G|(ORF1ab_polyprotein:A9303G(L3101L))|(ORF1a_polyprotein:A9303G(L3101L)) 2 0.000 1 0.000 3 0.000 4 0.000 2 0.000 1 0.000 1 0.000 1 0.000 1 0.000 2 0.000 1 0.000 1 1.000 1 0.000 3 0.000 1 0.000 3 0.000 2 0.000 2 0.000 18 1.0 0.0 1.0
9570 9570-insertT|(ORF1ab_polyprotein:9305insertT(3102fs))|(ORF1a_polyprotein:9305insertT(3102fs)) 1 0.000 1 1.000 2 1.0 0.0 1.0
linked 9866 C9866T|(ORF1ab_polyprotein:C9601T(L3201F))|(ORF1a_polyprotein:C9601T(L3201F)) 2 0.000 2 0.000 27996 0.563 23279 0.568 2 0.000 46901 0.750 5656 0.104 2 0.000 4542 0.190 36307 0.998 1 0.000 2 0.000 20966 0.559 26548 0.787 90195 0.998 4959 0.280 3949 0.325 1445 0.128 1 0.000 3561 0.307 12058 0.557 18330 0.996 45635 0.650 27232 0.322 24 3.369 5.713000000000000 9.082000000000000
linked 10029 C10029T|(ORF1ab_polyprotein:C9764T(T3255I))|(ORF1a_polyprotein:C9764T(T3255I)) 6891 0.997 7533 0.997 4145 0.997 3418 0.998 5374 0.998 2353 0.999 1675 0.994 2880 0.994 1275 0.995 2562 0.996 2706 0.996 2351 0.997 188 0.984 3674 0.994 210 1.000 813 0.998 304 0.997 36 1.000 4488 0.996 6224 0.996 4307 0.997 1665 0.995 1033 0.995 2736 0.997 3759 0.998 736 1.000 323 0.991 2964 0.996 7080 0.747 737 0.991 30 7.719000000000000 21.911000000000000 29.630000000000000
linked 10042 RATG13 A10042G|(ORF1ab_polyprotein:A9777G(S3259S))|(ORF1a_polyprotein:A9777G(S3259S)) 3 0.000 4 0.001 1788 0.430 1 0.000 1220 0.227 959 0.407 726 0.431 542 0.211 2703 0.994 422 0.179 191 1.000 1597 0.432 151 0.185 517 0.115 1433 0.229 2 0.000 264 0.359 41 0.126 1325 0.445 4141 0.437 347 0.466 21 1.573 5.101 6.6740000000000000
10066 A10066-10066del|(ORF1ab_polyprotein:9801-9801del(3267fs))|(ORF1a_polyprotein:9801-9801del(3267fs)) 1 0.000 1 0.000 1 0.001 2451 0.259 4 0.26 0.0 0.26
10168 T10168-10168del|(ORF1ab_polyprotein:9903-9903del(3301fs))|(ORF1a_polyprotein:9903-9903del(3301fs)) 203 0.277 1 0.277 0 0.277
linked 10198 C10198T|(ORF1ab_polyprotein:C9933T(D3311D))|(ORF1a_polyprotein:C9933T(D3311D)) 6912 0.999 7586 0.999 4154 0.999 3410 0.998 5374 0.999 2349 0.999 1681 0.996 2893 0.996 1281 0.999 2573 0.998 2702 0.999 2362 0.998 189 0.990 3690 0.998 210 1.000 814 0.999 304 1.000 36 1.000 4503 0.997 6224 0.998 4324 0.999 1671 0.999 1033 0.997 2743 0.999 3757 0.998 734 1.000 324 0.997 2973 0.998 7113 0.750 739 0.997 30 7.737000000000000 21.958 29.695000000000000
10207 RATG13 C10207T|(ORF1ab_polyprotein:C9942T(N3314N))|(ORF1a_polyprotein:C9942T(N3314N)) 7051 0.928 1 0.000 2 0.928 0 0.928
10323 A10323G|(ORF1ab_polyprotein:A10058G(K3353R))|(ORF1a_polyprotein:A10058G(K3353R)) 11 0.000 5812 0.113 5 0.000 18 0.000 4 0.000 8 0.000 2 0.000 9337 0.997 1 0.000 1 0.000 9 0.000 4 0.000 5 0.000 1 0.000 5 0.000 1 0.000 1 0.000 1 0.000 1 0.000 2308 0.042 5 0.000 1 0.000 3 0.000 2 0.000 2 0.000 2 0.000 3 0.000 12 0.000 23711 0.351 16 0.000 30 1.503 0.0 1.503
linked 10447 RATG13 G10447A|(ORF1ab_polyprotein:G10182A(R3394R))|(ORF1a_polyprotein:G10182A(R3394R)) 51791 0.999 51066 0.998 43522 0.998 69610 0.998 23009 0.998 42619 0.997 11767 0.997 9370 0.999 10406 0.998 19550 0.998 44949 0.998 21931 0.998 21875 0.998 5612 0.999 33050 0.997 9446 0.998 4223 0.999 11 1.000 6217 0.997 23424 0.998 54156 0.998 41382 0.998 6964 0.998 29712 0.998 11421 0.998 9759 0.999 14865 0.999 14102 0.998 2933 0.999 76343 0.997 2 0.667 67334 0.998 73151 0.998 33 7.984 24.623 32.607
linked 10449 C10449A|(ORF1ab_polyprotein:C10184A(P3395H))|(ORF1a_polyprotein:C10184A(P3395H)) 51783 0.998 51071 0.999 43529 0.999 69627 0.999 23005 0.998 42626 0.998 11777 0.998 9355 0.998 10391 0.997 19552 0.998 44937 0.998 21929 0.998 21860 0.998 5610 0.998 33064 0.998 9447 0.998 4218 0.998 11 1.000 6209 0.996 23415 0.998 54144 0.998 41372 0.998 6964 0.998 29682 0.997 11414 0.997 9760 0.999 14854 0.998 14096 0.998 2929 0.998 76297 0.997 2 0.667 67314 0.997 73080 0.997 33 7.9830000000000000 24.618 32.601
10507 C10507T|(ORF1ab_polyprotein:C10242T(N3414N))|(ORF1a_polyprotein:C10242T(N3414N)) 5 0.000 5778 0.113 6 0.000 9 0.000 2 0.000 5 0.000 1 0.000 9355 0.998 5 0.000 1 0.000 1 0.000 3 0.000 2 0.000 1 0.000 3 0.000 2 0.000 1 0.000 3 0.000 6 0.000 8 0.000 10 0.000 21 1.111 0.0 1.111
10602 G10602T|(ORF1ab_polyprotein:G10337T(G3446V))|(ORF1a_polyprotein:G10337T(G3446V)) 38 0.000 38 0.000 84 0.000 57 0.000 50 0.000 37 0.000 40 0.001 11 0.000 40 0.001 28 0.001 54 0.001 14 0.001 39 0.001 37 0.001 9 0.001 40 0.000 2 0.001 46 0.001 24 0.000 39 0.001 32 0.001 32 0.001 19 0.001 10 0.000 7172 0.461 75 0.001 92 0.001 3 0.001 28 0.464 0.014000000000000000 0.47800000000000000
linkedubiq 11288 TCTGGTTTT11288-11296del|(ORF1ab_polyprotein:11023-11031del(SGF3675-3677del))|(ORF1a_polyprotein:11023-11031del(SGF3675-3677del)) 19775 0.999 29707 0.999 35688 0.999 43173 0.999 32599 0.999 23777 0.998 9951 0.998 2031 0.998 3381 0.999 21125 0.999 13337 0.999 985 0.999 14942 0.999 5954 0.999 15168 0.999 5303 0.999 1022 0.999 47036 0.999 635 1.000 61 1.000 31986 0.999 26843 0.999 36943 0.999 10182 0.999 9177 0.999 7783 0.999 10924 0.998 7248 0.998 1272 0.997 20171 0.998 31371 0.998 2400 0.997 32 8.988 22.971 31.959
11436 G11436T|(ORF1ab_polyprotein:G11171T(G3724V))|(ORF1a_polyprotein:G11171T(G3724V)) 7 0.000 13 0.000 13 0.000 16 0.000 22 0.001 12 0.001 5 0.001 2 0.001 1 0.000 17 0.001 9 0.001 18 0.001 6 0.001 16 0.001 7 0.001 1 0.001 41 0.001 24 0.001 23 0.001 24 0.001 7 0.001 6 0.001 3 0.000 11 0.001 1971 0.269 1 0.001 19 0.001 34 0.001 28 0.275 0.015000000000000000 0.29000000000000000
12084 C12084T|(ORF1ab_polyprotein:C11819T(T3940I))|(ORF1a_polyprotein:C11819T(T3940I)) 4 0.000 8 0.000 23 0.000 33 0.000 21 0.000 9 0.000 8 0.000 3 0.000 58860 0.248 6 0.000 10 0.000 1 0.000 2 0.000 2 0.000 4 0.000 3 0.000 9 0.000 29 0.000 3 0.000 2 0.000 3 0.000 7 0.000 2 0.000 6 0.000 2 0.000 2 0.000 4 0.000 7 0.000 32 0.000 28 0.000 29 0.000 31 0.248 0.0 0.248
12331 G12331T|(ORF1ab_polyprotein:G12066T(R4022S))|(ORF1a_polyprotein:G12066T(R4022S)) 27 0.001 32 0.001 34 0.001 19 0.000 12 0.000 41 0.001 34 0.001 9 0.001 20 0.001 7 0.000 25 0.001 11 0.001 21 0.001 23 0.001 65 0.001 14 0.001 13 0.000 1 0.000 17 0.001 21 0.001 20 0.001 8 0.001 10 0.000 26 0.001 75 0.001 10 0.000 10123 0.351 5 0.000 40 0.001 21 0.001 61 0.001 31 0.358 0.015000000000000000 0.373
12397 A12397-12397del|(ORF1ab_polyprotein:12132-12132del(4044fs))|(ORF1a_polyprotein:12132-12132del(4044fs)) 1 0.000 6467 0.232 1 0.000 3 0.232 0.0 0.232
linked 12473 RATG13 C12473T|(ORF1ab_polyprotein:C12208T(L4070L))|(ORF1a_polyprotein:C12208T(L4070L)) 1 0.000 1 0.000 7001 0.127 471 0.009 633 0.026 35227 0.533 48 0.001 1 0.000 3929 0.175 16151 0.492 13661 0.995 111 0.004 213 0.007 1 0.000 13996 0.516 19405 0.551 195 0.066 62 0.681 2187 0.093 7442 0.235 38152 0.996 16967 0.232 18268 0.647 13589 0.999 2 1.000 15846 0.362 19069 0.568 17445 0.257 28 2.0590000000000000 7.513000000000000 9.572000000000000
12616 C12616T|(ORF1ab_polyprotein:C12351T(D4117D))|(ORF1a_polyprotein:C12351T(D4117D)) 1 0.000 7 0.123 128 0.130 253 1.000 1 0.000 5 1.253 0.0 1.253
13121 A13121T|(ORF1ab_polyprotein:A12856T(S4286C))|(ORF1a_polyprotein:A12856T(S4286C)) 2 0.000 3 0.000 9 0.000 5 0.000 2 0.000 8 0.000 2 0.000 1 0.000 13627 0.350 99 0.033 1 0.000 2 0.000 1 0.000 1 0.000 1 0.000 5 0.000 3 0.000 3 0.000 18 0.383 0.0 0.383
13235 G13235-13235del|(ORF1ab_polyprotein:12970-12970del(4324fs))|(ORF1a_polyprotein:12970-12970del(4324fs)) 24065 0.246 1 0.246 0 0.246
linked 13339 T13339C|(ORF1ab_polyprotein:T13074C(N4358N))|(ORF1a_polyprotein:T13074C(N4358N)) 59503 0.996 91328 0.997 126730 0.996 172715 0.801 43106 0.496 18251 0.422 90962 0.877 43532 0.995 62080 0.858 34159 0.766 1496 0.419 1 1.000 41965 0.640 1 1.000 13738 0.349 8192 0.549 4 0.000 58 1.000 18453 0.836 2067 0.678 1699 0.995 55240 0.933 60871 0.995 12655 0.996 13222 0.996 34217 0.997 7178 0.517 153664 0.993 40773 0.993 22000 0.225 623 0.992 31 4.938000000000000 19.369 24.307000000000000
13460 T13460-13460del|(ORF1ab_polyprotein:13195-13195del(4399fs))|(ORF1a_polyprotein:13195-13195del(4399fs)) 22 0.000 13 0.000 7 0.000 10 0.000 5 0.000 11 0.000 15 0.000 15 0.000 18939 0.211 4 0.000 3 0.000 1 0.000 8 0.000 11 0.000 9 0.000 4 0.000 86 0.000 3 0.000 6 0.000 2 0.000 2 0.000 13 0.000 4 0.000 2 0.000 15 0.000 3 0.000 6 0.000 7 0.000 4 0.000 14 0.000 30 0.211 0.0 0.211
13571 G13571T|(ORF1ab_polyprotein:G13307T(G4436V)) 34 0.000 28 0.000 20 0.000 28 0.000 6 0.000 33 0.000 40 0.000 151 0.001 19032 0.212 21 0.000 56 0.001 52 0.000 35 0.001 60 0.000 36 0.000 15 0.000 16 0.000 18 0.000 87 0.000 20 0.000 22 0.000 35 0.000 29 0.000 83 0.001 47 0.000 12 0.000 30 0.000 11 0.000 32 0.000 60 0.000 59 0.000 95 0.000 32 0.213 0.003 0.216
13604 G13604C|(ORF1ab_polyprotein:G13340C(R4447P)) 4 0.000 6 0.000 9 0.000 5 0.000 6 0.000 9 0.000 9 0.000 6 0.000 4 0.000 3 0.000 5 0.000 13 0.000 8 0.000 7 0.000 6 0.000 4 0.000 2 0.000 2 0.000 5 0.000 1 0.000 2 0.000 2 0.000 3 0.000 3 0.000 3 0.000 1 0.000 2 0.000 2 0.000 1 0.000 21 0.000 37169 0.244 34 0.000 32 0.244 0.0 0.244
14390 T14390C|(ORF1ab_polyprotein:T14126C(F4709S)) 28 0.000 10 0.000 23 0.000 5 0.000 3 0.000 14 0.000 13 0.000 8 0.000 7 0.000 3 0.000 9 0.000 4 0.000 13 0.000 5 0.000 5 0.000 6 0.000 4 0.000 3 0.000 1 1.000 14 0.000 20 0.000 2 0.000 8 0.000 3 0.000 2 0.000 4 0.000 1 0.000 7 0.000 1 0.000 1 0.000 17 0.000 9 0.000 10 0.000 33 1.0 0.0 1.0
linkedubiq 14408 Delta C14408T|(ORF1ab_polyprotein:C14144T(P4715L)) 169032 0.999 109509 0.999 133959 0.999 61311 0.999 38625 0.999 106917 0.999 114136 0.999 81327 0.999 57299 0.999 59793 0.999 88407 0.999 46233 0.999 107708 0.999 55853 0.999 46090 0.999 56002 0.999 1301 0.998 36871 0.999 39661 0.999 1 1.000 149649 0.999 145666 0.999 58032 0.999 44688 0.999 57251 0.999 66750 0.999 102904 0.999 23876 0.999 45308 0.999 24764 0.999 40654 0.999 13365 1.000 107837 0.999 88491 0.999 153894 0.999 35 8.992000000000000 25.974000000000000 34.966000000000000
15372 G15372T|(ORF1ab_polyprotein:G15108T(T5036T)) 4 0.000 53844 0.875 9 0.000 3 0.000 3 0.000 5 0.000 4 0.000 21 0.000 1 0.000 1111 0.018 7 0.000 3 0.000 6 0.000 3 0.000 2 0.000 13916 0.271 2 0.000 2 0.000 3 0.000 10 0.000 2257 0.033 7 0.000 1 0.000 5 0.000 2 0.000 1 0.000 1 0.000 1 0.000 20 0.000 14 0.000 13 0.000 31 1.146 0.051000000000000000 1.1970000000000000
15530 G15530T|(ORF1ab_polyprotein:G15266T(C5089F)) 53 0.000 50 0.001 39 0.000 37 0.000 19 0.000 59 0.001 77 0.001 94 0.001 54 0.001 50 0.001 31 0.001 83 0.001 48 0.001 42 0.001 57 0.001 46 0.001 24 0.001 16 0.001 66 0.001 23 0.001 20 0.001 32 0.001 43 0.001 91 0.001 42 0.001 30 0.001 46 0.001 5953 0.347 46 0.001 14 0.001 49 0.001 83 0.001 32 0.354 0.02000000000000000 0.374
16038 T16038C|(ORF1ab_polyprotein:T15774C(A5258A)) 16 0.000 16 0.000 12 0.000 36 0.000 4 0.000 25 0.000 18 0.000 22 0.000 11 0.000 6 0.000 4 0.000 3 0.000 4 0.000 2 0.000 5 0.000 5 0.000 12 0.000 11 0.000 3 0.000 4 0.000 8 0.000 13 0.000 4 0.000 1 0.000 8 0.000 9 0.000 15 0.000 9 0.000 44807 0.366 19 0.000 30 0.366 0.0 0.366
ubiq 17410 C17410T|(ORF1ab_polyprotein:C17146T(R5716C)) 66305 0.998 50903 0.998 13714 0.998 32400 0.998 57569 0.995 54568 0.996 31458 0.995 22230 0.998 29427 0.998 17131 0.998 17260 0.998 26732 0.998 18640 0.997 9536 0.998 26286 0.997 7176 0.997 7983 0.998 13311 0.999 15292 0.999 23055 0.999 24181 0.999 26002 0.999 27469 0.999 26193 0.999 13075 0.998 1 1.000 9358 0.998 25252 0.998 11157 0.997 16394 0.998 85801 0.996 12208 0.996 67216 0.996 83725 0.997 34 8.981 24.941 33.922
17643 T17643C|(ORF1ab_polyprotein:T17379C(A5793A)) 16 0.000 19 0.000 24 0.000 32 0.000 9 0.000 30 0.000 15 0.000 3 0.000 6 0.000 17 0.000 4 0.000 7 0.000 13 0.000 25711 0.328 7 0.000 4 0.000 20 0.000 8 0.000 7 0.000 16 0.000 5 0.000 14 0.000 2 0.000 8 0.000 7 0.000 5 0.000 6 0.000 8 0.000 27 0.000 4 0.000 30 0.328 0.0 0.328
17913 C17913T|(ORF1ab_polyprotein:C17649T(N5883N)) 2 0.000 1 0.000 2 0.000 1 0.000 1 0.000 5070 0.386 1 0.000 1 0.000 1 0.000 1 0.000 6 0.000 3 0.000 1 0.000 13 0.386 0.0 0.386
18106 G18106T|(ORF1ab_polyprotein:G17842T(A5948S)) 8 0.000 21338 0.933 3 0.000 5 0.001 4 0.000 17 0.001 5 0.000 8 0.001 6 0.001 1 0.000 1 0.000 10 0.001 4 0.001 6 0.001 6 0.001 7 0.001 7 0.001 5 0.000 3 0.000 4 0.001 16 0.001 3 0.001 11 0.001 72 0.001 1 0.000 16 0.001 24 0.001 27 0.937 0.013000000000000000 0.9500000000000000
linked 18163 A18163G|(ORF1ab_polyprotein:A17899G(I5967V)) 30119 0.999 29413 0.999 37004 0.999 12903 0.999 19599 0.999 25881 0.999 12892 0.999 14932 0.999 11998 0.998 3612 0.998 8892 0.998 10242 0.999 14066 0.999 12210 0.999 6950 0.999 1796 0.998 3064 0.999 12 1.000 8897 0.998 19036 0.999 21813 0.999 13139 0.999 8038 0.999 15553 0.998 9885 0.999 16768 0.999 4732 0.999 2738 0.998 51893 0.999 9777 0.999 39865 0.999 27500 0.999 32 6.993000000000000 24.969000000000000 31.962000000000000
18264 C18264T|(ORF1ab_polyprotein:C18000T(T6000T)) 1 0.000 2 0.000 1 0.000 663 0.361 4 0.361 0.0 0.361
18377 C18377T|(ORF1ab_polyprotein:C18113T(T6038I)) 4 0.000 3 0.000 1 0.000 5006 0.232 4 0.232 0.0 0.232
linked 18492 A18492G|(ORF1ab_polyprotein:A18228G(P6076P)) 9037 0.997 6474 0.997 23786 0.119 7486 0.998 4197 0.056 5714 0.094 811 0.616 1871 0.994 2629 0.999 5510 0.999 753 0.052 6537 0.994 3164 0.110 80 0.002 1 1.000 302 0.984 5438 0.897 2974 0.155 5144 0.999 3567 0.999 14 0.824 15 0.833 5387 0.999 3816 0.207 1343 0.031 546 1.000 7163 0.997 6178 0.043 2439 0.035 29 3.227 14.803000000000000 18.030000000000000
18788 C18788T|(ORF1ab_polyprotein:C18524T(T6175I)) 7 0.000 9 0.000 21 0.000 15 0.000 8 0.000 7 0.000 7 0.000 6 0.000 3 0.000 2 0.000 4 0.000 18 0.000 1 0.000 6 0.000 7 0.000 3 0.000 2 0.000 1 0.000 3 0.000 2 0.000 6 0.000 1 0.000 1 0.000 4 0.000 23653 0.396 9 0.000 21 0.000 5 0.000 28 0.396 0.0 0.396
18980 A18980T|(ORF1ab_polyprotein:A18716T(H6239L)) 49 0.000 51 0.001 35 0.000 137 0.001 54 0.001 29 0.001 1 0.500 5 0.000 30 0.000 21 0.001 11 0.000 51 0.001 18 0.000 21 0.000 1 0.001 11 0.000 15 0.000 23 0.001 20 0.000 22 0.001 9 0.000 20 0.000 14 0.000 1 0.000 178 0.001 126 0.001 7 0.001 27 0.503 0.009000000000000000 0.512
18994 G18994T|(ORF1ab_polyprotein:G18730T(A6244S)) 76 0.001 71 0.001 51 0.001 166 0.001 59 0.001 68 0.002 1 0.500 21 0.002 72 0.001 70 0.002 35 0.001 113 0.002 40 0.001 48 0.001 2 0.001 40 0.001 31 0.001 45 0.001 48 0.001 60 0.001 27 0.001 39 0.001 42 0.001 5 0.001 342 0.002 235 0.002 16 0.001 27 0.51 0.022000000000000000 0.532
18998 C18998A|(ORF1ab_polyprotein:C18734A(A6245E)) 81 0.001 53 0.001 50 0.001 152 0.001 51 0.001 51 0.001 1 0.500 15 0.001 68 0.001 59 0.001 33 0.001 100 0.001 46 0.001 51 0.001 1 0.001 42 0.001 38 0.001 31 0.001 25 0.001 42 0.001 25 0.001 33 0.001 29 0.001 7 0.001 257 0.001 172 0.001 12 0.001 27 0.507 0.01900000000000000 0.526
19067 A19067T|(ORF1ab_polyprotein:A18803T(Q6268L)) 55 0.001 52 0.001 37 0.000 88 0.001 31 0.001 25 0.001 1 1.000 7 0.001 37 0.001 41 0.001 22 0.001 48 0.001 24 0.001 41 0.001 3 0.002 29 0.001 30 0.001 26 0.001 42 0.001 29 0.001 10 0.000 16 0.000 21 0.001 5 0.001 199 0.001 149 0.001 12 0.001 27 1.007 0.017000000000000000 1.0240000000000000
19413 A19413C|(ORF1ab_polyprotein:A19149C(Q6383H)) 28 0.001 14 0.001 35 0.001 19 0.001 13 0.001 4 0.000 1 1.000 4 0.000 2 0.000 2 0.000 1 0.000 4 0.000 3 0.000 1 0.000 4 0.000 1 0.000 1 0.000 4 0.001 4 0.000 1 0.000 1 0.000 2 0.000 1 0.000 2 0.002 21 0.000 8 0.001 12 0.000 18 0.000 28 1.0020000000000000 0.007 1.0090000000000000
19414 G19414C|(ORF1ab_polyprotein:G19150C(V6384L)) 7 0.000 1 0.000 2 0.000 1 0.000 4 0.000 1 1.000 1 0.000 1 0.000 1 0.000 2 0.000 1 0.000 2 0.000 1 0.000 2 0.000 13 0.000 1 0.000 10 0.000 15 0.000 18 1.0 0.0 1.0
19485 T19485C|(ORF1ab_polyprotein:T19221C(A6407A)) 29 0.000 18 0.000 17 0.000 14 0.000 50 0.000 16 0.000 16 0.000 7 0.000 4 0.000 10 0.000 11 0.000 9 0.000 3 0.000 16 0.000 3 0.000 10 0.000 19 0.000 8 0.000 12 0.000 3 0.000 71555 0.864 34533 0.667 6 0.000 10 0.000 9 0.000 8 0.000 7 0.000 23341 0.337 8 0.000 39 0.000 7 0.000 15 0.000 32 1.8680000000000000 0.0 1.8680000000000000
19884 C19884T|(ORF1ab_polyprotein:C19620T(Y6540Y)) 7 0.000 9 0.000 2 0.000 12 0.000 9 0.000 2 0.000 9 0.000 38278 0.400 4 0.000 4 0.000 3 0.000 2 0.000 1 0.000 4 0.000 2 0.000 1 0.000 3209 0.074 1 0.000 2 0.000 1 0.000 1 0.000 2 0.000 1 0.000 3 0.000 6 0.000 7 0.000 26 0.47400000000000000 0.0 0.47400000000000000
linked 19955 C19955T|(ORF1ab_polyprotein:C19691T(T6564I)) 140755 0.998 119215 0.998 81594 0.998 202692 0.998 92556 0.995 99699 0.996 98570 0.995 95567 0.998 92718 0.998 56070 0.998 17432 0.997 3 1.000 1 1.000 66580 0.997 64966 0.997 79053 0.997 53324 0.998 106585 0.998 111143 0.998 47702 0.998 43194 0.998 13458 0.998 6492 0.998 33666 0.999 103018 0.998 56331 0.998 39881 0.998 31595 0.998 47152 0.998 82396 0.998 131023 0.996 116483 0.996 100552 0.996 190571 0.997 34 7.981000000000000 25.937000000000000 33.918000000000000
19986 T19986C|(ORF1ab_polyprotein:T19722C(F6574F)) 15 0.000 6305 0.053 10 0.000 24 0.000 8 0.000 14 0.000 22 0.000 57219 0.597 8 0.000 5 0.000 2 0.000 8 0.000 4 0.000 2 0.000 5 0.000 11 0.000 4 0.000 2 0.000 2 0.000 2 0.000 6 0.000 1 0.000 3 0.000 5 0.000 12 0.000 8 0.000 15 0.000 17 0.000 8 0.000 20 0.000 30 0.65 0.0 0.65
linked 20055 A20055G|(ORF1ab_polyprotein:A19791G(E6597E)) 139466 0.998 117737 0.998 81561 0.999 202128 0.998 92203 0.998 98088 0.998 98037 0.998 95489 0.998 92583 0.998 55088 0.998 17162 0.998 3 1.000 1 1.000 66536 0.998 65014 0.998 78343 0.999 53311 0.998 106620 0.999 111113 0.998 47696 0.998 41441 0.998 12655 0.999 6254 0.998 33469 0.998 102856 0.998 56150 0.998 39774 0.999 31454 0.999 47104 0.999 82492 0.999 131168 0.997 116232 0.997 99668 0.997 190648 0.998 34 7.986000000000000 25.955000000000000 33.941
20857 G20857T|(ORF1ab_polyprotein:G20593T(V6865F)) 29 0.000 27 0.000 24 0.000 77 0.000 88 0.001 81 0.001 65 0.001 50 0.001 39 0.001 40 0.001 41 0.001 37 0.001 65 0.001 19 0.001 18 0.001 89 0.001 56 0.001 61 0.001 43 0.001 136 0.001 23 0.001 33 0.001 32 0.001 26 0.001 4 0.001 171 0.001 34876 0.581 17 0.001 28 0.587 0.017000000000000000 0.604
linked 20930 C20930T|(ORF1ab_polyprotein:C20666T(T6889M)) 8 0.000 3 0.000 1 0.000 12 0.000 9 0.000 9 0.000 9 0.000 1 0.000 2 0.000 5 0.000 1 0.000 3 0.000 1 0.000 4 0.000 4 0.000 3 0.000 8 0.000 1 0.000 1 0.000 5 0.000 68089 0.482 58565 0.995 3 0.000 23 0.995 0.482 1.4770000000000000
20991 G20991T|(ORF1ab_polyprotein:G20727T(L6909F)) 13 0.000 15 0.000 11 0.000 40 0.000 21 0.000 24 0.000 12 0.000 28 0.001 16 0.000 18 0.000 10 0.000 7 0.000 8 0.000 15 0.001 9 0.000 24 0.000 13 0.000 18 0.000 14 0.000 47 0.000 10 0.000 13 0.000 15 0.000 13505 0.547 1 0.000 56 0.000 18 0.000 4 0.000 28 0.548 0.001 0.549
21297 C21297T|(ORF1ab_polyprotein:C21033T(G7011G)) 11 0.000 48534 0.998 4 0.000 7 0.000 1 0.000 5 0.000 10 0.000 3 0.000 1 0.000 1 0.000 1 0.000 1 0.000 1 0.000 2 0.000 4 0.000 1 0.000 5 0.000 4 0.000 7 0.000 5 0.000 1 0.000 2 0.000 6 0.000 8 0.000 17 0.000 25 0.998 0.0 0.998
linked 21618 C21618T|(surface_glycoprotein:C56T(T19I)) 1986 0.998 2599 1.000 405 0.998 6489 0.998 1092 0.999 3817 0.998 3559 0.999 2426 0.999 2536 1.000 2039 0.999 1656 1.000 71 1.000 289 1.000 223 1.000 2208 0.998 166 1.000 70 1.000 197 1.000 6503 0.999 7601 0.999 9274 0.999 300 1.000 4 1.000 44 1.000 389 0.997 2257 0.998 96 1.000 27605 0.996 10288 0.996 1172 0.996 801 1.000 31 7.989 22.977 30.966
linked 21622 RATG13 C21622T|(surface_glycoprotein:C60T(T20T)) 1984 0.997 2596 0.998 406 1.000 6483 0.997 1091 0.998 3814 0.997 3549 0.996 2424 0.998 2532 0.998 2038 0.999 1652 0.998 71 1.000 289 1.000 223 1.000 2210 0.999 166 1.000 70 1.000 197 1.000 6497 0.998 7600 0.999 9258 0.997 300 1.000 4 1.000 44 1.000 390 1.000 2255 0.997 96 1.000 27603 0.996 10284 0.996 1173 0.997 800 0.999 31 7.984 22.97 30.954
linked 21624 G21624C|(surface_glycoprotein:G62C(R21T)) 1984 0.997 2599 1.000 405 0.998 6484 0.997 1093 1.000 3818 0.998 3555 0.998 2424 0.998 2533 0.999 2035 0.997 1649 0.996 71 1.000 289 1.000 223 1.000 2208 0.998 166 1.000 70 1.000 197 1.000 6471 0.994 7595 0.998 9262 0.998 300 1.000 4 1.000 44 1.000 389 0.997 2258 0.999 96 1.000 27608 0.996 10283 0.996 1173 0.997 800 0.999 31 7.983 22.967000000000000 30.950000000000000
linked 21633 TACCCCCTG21633-21641del|(surface_glycoprotein:TTACCCCCTGCA70-81TCAdel(LPPA24-27Sdel)) 1976 0.993 2594 0.998 403 0.993 6468 0.995 1087 0.995 3796 0.992 3535 0.992 2418 0.996 2528 0.997 2036 0.998 1653 0.998 71 1.000 287 0.993 223 1.000 2194 0.992 166 1.000 70 1.000 197 1.000 6488 0.997 7584 0.996 9259 0.997 299 0.997 4 1.000 44 1.000 387 0.992 2254 0.997 96 1.000 27509 0.992 10256 0.993 1172 0.996 800 0.999 31 7.969 22.919 30.888
linked 21652 TTC21652-21654del|(surface_glycoprotein:AATTCT88-93AATdel(NS30-31Ndel)) 1396 0.702 2 0.001 275 0.677 1960 0.301 808 0.739 1867 0.488 3170 0.888 2423 0.998 2366 0.933 409 0.200 103 0.062 69 0.972 193 0.668 223 1.000 1712 0.773 24 0.343 5111 0.785 6108 0.799 5074 0.544 258 0.857 4 1.000 44 1.000 84 0.037 22 0.229 317 0.392 25 4.3260000000000000 11.062000000000000 15.388000000000000
linked 21711 RATG13 C21711T|(surface_glycoprotein:C149T(S50L)) 249 0.996 1732 0.997 6 1.000 4 0.800 831 0.990 81 0.988 406 0.995 674 0.999 13 1.000 112 1.000 179 0.994 71 1.000 7 1.000 223 1.000 52 0.981 24 1.000 201 0.990 497 0.990 1470 0.996 2154 0.995 121 0.992 4 1.000 44 1.000 19 1.000 3 1.000 59 1.000 12 1.000 38 1.000 372 0.995 29 7.963000000000000 20.735 28.698
21736 C21736T|(surface_glycoprotein:C174T(F58F)) 153 0.307 1199 0.811 2 1.118 0 1.118
linked 21765 TACATG21765-21770del|(surface_glycoprotein:ATACATGTC202-210ATCdel(IHV68-70Idel)) 247 0.976 1732 0.988 6 1.000 4 1.000 837 0.976 83 0.988 409 0.971 680 0.991 13 1.000 111 0.982 176 0.978 70 0.972 7 1.000 224 0.974 53 0.981 24 1.000 204 0.986 499 0.998 1479 0.995 2170 0.990 122 0.992 4 1.000 44 1.000 19 1.000 3 1.000 60 1.000 12 0.923 38 1.000 370 0.969 29 7.953000000000000 20.677 28.63
21779 A21779C|(surface_glycoprotein:A217C(T73P)) 1 0.001 1 0.000 1 0.250 3 0.25 0.001 0.251
linked 21783 A21783C|(surface_glycoprotein:A221C(N74T)) 1 0.004 3 0.002 2 0.002 2 0.005 2 0.009 1 0.005 2 0.001 1 0.250 1 0.003 9 0.252 0.029 0.281
21793 G21793C|(surface_glycoprotein:G231C(K77N)) 1 0.001 1 0.250 2 0.251 0 0.251
linked 21794 A21794C|(surface_glycoprotein:A232C(R78R)) 1 0.002 1 0.009 1 0.250 1 0.077 4 0.25 0.088 0.33800000000000000
21797 T21797C|(surface_glycoprotein:TTT235-237CTA(F79L)) 1 0.002 1 0.250 2 0.252 0 0.252
21799 T21799A|(surface_glycoprotein:TTT235-237CTA(F79L)) 1 0.002 1 0.250 2 0.252 0 0.252
21801 A21801C|(surface_glycoprotein:A239C(D80A)) 1 0.001 1 0.002 1 0.001 1 0.000 1 0.250 5 0.252 0.002 0.254
linked 21804 A21804C|(surface_glycoprotein:A242C(N81T)) 1 0.004 1 0.001 2 0.002 1 0.002 1 0.001 1 0.009 2 0.001 1 0.250 2 0.005 9 0.252 0.023 0.275
21808 T21808C|(surface_glycoprotein:T246C(P82P)) 1 0.001 1 0.250 2 0.251 0 0.251
21810 T21810G|(surface_glycoprotein:T248G(V83G)) 1 0.250 1 0.25 0 0.25
21813 T21813A|(surface_glycoprotein:T251A(L84Q)) 1 0.001 1 0.001 1 0.000 1 0.250 1 0.003 5 0.251 0.004 0.255
linked 21822 A21822C|(surface_glycoprotein:A260C(N87T)) 1 0.001 1 0.001 2 0.005 1 0.009 4 0.002 1 0.250 2 0.005 7 0.251 0.022000000000000000 0.273
21836 T21836A|(surface_glycoprotein:TTT274-276ACT(F92T)) 1 0.250 1 0.25 0 0.25
21837 T21837C|(surface_glycoprotein:TTT274-276ACT(F92T)) 1 0.250 1 0.25 0 0.25
linked 21841 T21841G|(surface_glycoprotein:T279G(A93A)) 8 0.005 8 0.010 1 0.012 5 0.012 4 0.006 2 0.004 3 0.002 7 0.003 1 0.008 1 0.023 1 0.250 3 0.008 12 0.267 0.076 0.343
21929 G21929T|(surface_glycoprotein:G367T(A123S)) 39 0.000 12 0.000 35 0.001 81 0.001 61 0.001 37 0.001 15 0.000 131 0.001 49 0.001 23 0.001 56 0.001 23 0.001 45 0.001 23 0.001 13 0.001 7 0.001 1 0.500 2 0.001 40 0.001 8 0.000 14 0.001 31 0.001 21 0.001 45 0.001 15 0.000 17 0.001 5 0.000 119 0.001 50 0.001 77 0.001 5 0.001 31 0.506 0.01800000000000000 0.524
linkedubiq 21941 G21941T|(surface_glycoprotein:G379T(V127F)) 87087 0.998 26692 0.997 57856 0.998 150490 0.998 92140 0.997 49406 0.997 35677 0.997 122652 0.998 63579 0.998 26845 0.998 50956 0.998 26551 0.998 88 1.000 65197 0.998 26522 0.998 18480 0.998 10288 0.998 3 1.000 2459 0.999 221 0.995 29580 0.998 17313 0.998 17464 0.998 26395 0.998 24412 0.998 58837 0.998 31132 0.999 27376 0.998 11217 0.998 113743 0.997 54267 0.997 67690 0.997 5529 0.996 33 8.982000000000000 23.946 32.928000000000000
21949 A21949T|(surface_glycoprotein:A387T(K129N)) 40 0.000 11 0.000 13 0.000 34 0.000 59 0.001 29 0.001 23 0.001 13 0.000 11 0.000 4 0.000 8 0.000 6 0.000 9 0.000 4 0.000 6 0.000 1 0.000 1 0.333 5 0.000 1 0.000 1 0.000 7 0.000 6 0.000 15 0.000 2 0.000 3 0.000 24 0.000 13 0.000 31 0.000 7 0.001 29 0.333 0.004 0.337
linkedubiq 21987 G21987A|(surface_glycoprotein:G425A(G142D)) 86955 0.996 26680 0.997 57752 0.996 150168 0.996 91959 0.995 49319 0.995 35628 0.995 121968 0.992 63393 0.995 25715 0.956 50779 0.995 26471 0.995 88 1.000 64989 0.994 26440 0.994 18440 0.996 10262 0.995 3 1.000 2453 0.997 220 0.991 29473 0.994 17241 0.993 17390 0.993 26308 0.995 24308 0.994 58648 0.995 31056 0.996 27327 0.997 11187 0.996 113239 0.992 54071 0.994 67376 0.992 5502 0.992 33 8.954 23.839000000000000 32.79300000000000
linkedubiq 21991 TTA21991-21993del|(surface_glycoprotein:GTTTAT427-432GTTdel(VY143-144Vdel)) 86897 0.995 26650 0.996 57718 0.995 150055 0.995 91911 0.994 49273 0.995 35592 0.994 121662 0.990 63253 0.993 25666 0.954 50614 0.992 26406 0.993 87 0.989 64886 0.993 26377 0.992 18415 0.994 10246 0.994 3 1.000 2447 0.994 220 0.991 29442 0.993 17203 0.991 17370 0.992 26255 0.993 24309 0.994 58535 0.993 30997 0.994 27289 0.995 11167 0.994 112911 0.990 40380 0.742 67265 0.990 5497 0.991 33 8.94 23.545000000000000 32.485
linkedubiq 22031 T22031-22031del|(surface_glycoprotein:TTCAGA469-474TCAGGA(FR157-158SG)) 86972 0.996 26675 0.996 57777 0.996 150205 0.996 91865 0.994 49262 0.994 35587 0.994 122239 0.994 63378 0.995 26774 0.995 25725 0.504 26443 0.994 88 1.000 64978 0.995 26435 0.994 18425 0.995 10268 0.996 3 1.000 2449 0.995 219 0.986 29498 0.995 16882 0.972 17440 0.995 26332 0.996 24313 0.994 58666 0.996 31039 0.996 27314 0.996 11178 0.995 113249 0.993 53987 0.993 67369 0.992 5507 0.992 33 8.934 23.380000000000000 32.31400000000000
linkedubiq 22035 22035-insertG|(surface_glycoprotein:TTCAGA469-474TCAGGA(FR157-158SG)) 86972 0.996 26675 0.996 57777 0.996 150205 0.996 91865 0.994 49262 0.994 35587 0.994 122239 0.994 63378 0.995 26774 0.995 25725 0.504 26443 0.994 88 1.000 64978 0.994 26435 0.994 18425 0.995 10268 0.996 3 1.000 2449 0.995 219 0.986 29498 0.994 16882 0.972 17440 0.995 26332 0.996 24313 0.994 58666 0.996 31039 0.996 27314 0.996 11178 0.995 113249 0.993 53987 0.993 67369 0.992 5507 0.992 33 8.933 23.379000000000000 32.312
22094 G22094A|(surface_glycoprotein:G532A(D178N)) 3 0.000 1 0.000 1 0.000 7 0.000 5 0.000 1 0.000 6 0.000 4 0.000 1 0.000 2 0.000 1 0.333 1 0.000 4 0.000 13 0.333 0.0 0.333
linked 22120 C22120A|(surface_glycoprotein:C558A(F186L)) 40346 0.462 7 0.000 34624 0.596 47 0.000 58033 0.628 29729 0.600 13962 0.390 122852 0.997 16619 0.261 6981 0.260 25839 0.506 26562 0.997 89 1.000 22533 0.344 11 0.000 6038 0.325 5 0.000 3 1.000 128 0.571 25291 0.853 14129 0.814 8485 0.485 22635 0.855 10846 0.443 58909 0.998 5 0.000 5588 0.204 3411 0.304 67 0.001 32 0.001 13391 0.197 1955 0.353 32 4.326 10.119 14.445
linked 22132 G22132T|(surface_glycoprotein:G570T(R190S)) 54980 0.629 28 0.001 34637 0.597 105 0.001 58103 0.629 31583 0.638 16851 0.471 122785 0.997 63661 0.998 13034 0.485 25870 0.506 26574 0.998 89 1.000 46339 0.708 44 0.002 6030 0.325 10311 0.998 3 1.000 7 0.003 176 0.786 25256 0.852 14532 0.837 12375 0.708 26434 0.998 24450 0.998 58932 0.998 22820 0.732 12642 0.461 8949 0.797 113746 0.996 40646 0.746 13475 0.198 1968 0.356 33 5.346 16.103000000000000 21.449000000000000
22161 A22161T|(surface_glycoprotein:A599T(Y200F)) 21 0.000 14 0.001 11 0.000 39 0.000 15 0.000 11 0.000 15 0.000 55 0.000 17 0.000 11 0.000 19 0.000 7 0.000 27 0.000 17 0.001 5 0.000 5 0.000 1 0.333 1 0.000 10 0.000 7 0.000 8 0.000 2 0.000 18 0.001 14 0.000 10 0.000 8 0.000 6 0.001 75 0.001 32 0.001 53 0.001 2 0.000 31 0.336 0.004 0.34
22166 A22166C|(surface_glycoprotein:A604C(K202Q)) 15 0.000 5 0.000 13 0.000 28 0.000 43 0.000 30 0.001 15 0.000 19 0.000 8 0.000 4 0.000 3 0.000 4 0.000 13 0.000 6 0.000 2 0.000 1 0.333 2 0.000 3 0.000 3 0.000 1 0.000 1 0.000 10 0.000 4 0.000 2 0.000 4 0.000 53 0.000 31 0.001 41 0.001 8 0.001 29 0.334 0.003 0.337
22173 A22173T|(surface_glycoprotein:A611T(Y204F)) 15 0.000 4 0.000 10 0.000 30 0.000 31 0.000 11 0.000 14 0.000 46 0.000 13 0.000 9 0.000 13 0.000 5 0.000 12 0.000 10 0.000 4 0.000 2 0.000 1 0.333 5 0.000 8 0.000 7 0.000 14 0.001 6 0.000 15 0.000 8 0.000 8 0.000 1 0.000 59 0.001 23 0.000 16 0.000 1 0.000 30 0.333 0.002 0.335
linkedubiq 22194 ATT22194-22196del|(surface_glycoprotein:AATTTA631-636ATAdel(NL211-212Idel)) 142881 0.998 54134 0.998 78540 0.998 206724 0.998 165123 0.997 74957 0.997 57820 0.997 185506 0.998 78711 0.998 47892 0.998 94093 0.999 26589 0.998 24702 0.998 88890 0.998 10573 0.998 42172 0.998 11388 0.999 23753 0.998 12057 0.998 2 1.000 12573 0.999 16808 0.999 57665 0.998 36094 0.998 42358 0.999 32648 0.999 48942 0.998 98551 0.999 44747 0.999 36472 0.998 22651 0.999 113889 0.997 73895 0.997 90790 0.843 111195 0.998 35 8.829 25.952 34.781000000000000
linked 22194 ATT22194-22196del|(surface_glycoprotein:AATTTA631-636ATGdel(NL211-212Mdel)) 18 0.000 6 0.000 12 0.000 20 0.000 22 0.000 7 0.000 8 0.000 16 0.000 6 0.000 8 0.000 7 0.000 3 0.000 2 0.000 7 0.000 3 0.000 1 0.000 1 0.000 4 0.000 4 0.000 4 0.000 4 0.000 3 0.000 8 0.000 7 0.000 5 0.000 12 0.000 3 0.000 13 0.000 9 0.000 16691 0.155 14 0.000 31 0.155 0.0 0.155
linked 22198 A22198G|(surface_glycoprotein:AATTTA631-636ATGdel(NL211-212Mdel)) 18 0.000 6 0.000 12 0.000 20 0.000 22 0.000 7 0.000 8 0.000 16 0.000 6 0.000 8 0.000 7 0.000 3 0.000 2 0.000 7 0.000 3 0.000 1 0.000 1 0.000 4 0.000 4 0.000 4 0.000 4 0.000 3 0.000 8 0.000 7 0.000 5 0.000 12 0.000 3 0.000 13 0.000 9 0.000 16691 0.155 14 0.000 31 0.155 0.0 0.155
linkedubiq 22200 T22200G|(surface_glycoprotein:T638G(V213G)) 143338 0.999 54358 0.999 78739 0.999 207349 0.999 165964 0.999 75251 0.999 58061 0.999 185973 0.999 78858 0.999 48019 0.999 94345 0.999 26613 0.999 24791 0.999 89064 0.999 10622 0.998 42320 0.999 11430 0.999 23790 0.999 12081 1.000 2 1.000 12623 0.999 16870 0.999 57782 0.999 36204 0.999 40707 0.957 32698 0.999 49070 0.999 98791 0.999 44841 0.999 36540 0.999 22704 0.999 114128 0.999 74077 0.998 91038 0.843 111701 0.998 35 8.836000000000000 25.93000000000000 34.76600000000000
22207 T22207G|(surface_glycoprotein:T645G(D215E)) 4 0.000 1269 0.023 4 0.000 6 0.000 17 0.000 7 0.000 6 0.000 186228 0.999 3 0.000 2 0.000 5 0.000 4 0.000 4 0.000 2 0.000 1 0.000 1 0.000 1 0.000 2 0.000 3 0.000 2 0.000 1 0.000 4 0.000 3 0.000 1 0.000 2 0.000 6 0.000 8 0.000 4 0.000 22 0.000 29 1.022 0.0 1.022
linkedubiq 22208 C22208T|(surface_glycoprotein:C646T(L216F)) 143397 0.999 54320 0.998 78794 0.999 207484 0.999 166064 0.998 75152 0.999 58066 0.998 186184 0.999 78868 0.999 47985 0.999 94478 0.999 26595 0.999 24865 0.998 89113 0.999 10665 0.999 42286 0.999 11444 0.997 23824 0.999 12082 0.999 2 1.000 12664 0.999 16919 0.998 57739 0.999 36203 0.999 42496 0.999 32695 0.999 49150 0.999 98919 0.999 44864 0.999 36569 0.999 22741 0.999 114083 0.999 74152 0.999 90957 0.843 111914 0.998 35 8.835000000000000 25.967000000000000 34.80200000000000
22289 GCTTTA22289-22294del|(surface_glycoprotein:727-732del(AL243-244del)) 17221 0.416 1 0.416 0 0.416
linked 22295 C22295A|(surface_glycoprotein:C733A(H245N)) 57637 0.998 29830 0.998 20821 0.999 56966 0.998 73975 0.997 28052 0.997 22668 0.996 63426 0.998 15275 0.999 22700 0.998 44189 0.998 24784 0.998 23995 0.998 10661 0.998 17248 0.998 11464 0.999 5277 0.999 1760 0.999 10209 0.999 16710 0.999 31144 0.999 21487 0.999 27235 0.999 6347 0.999 24768 0.999 40157 0.998 13851 0.999 9169 0.999 11519 0.998 19820 0.997 24048 0.581 106375 0.997 32 7.571000000000000 23.956000000000000 31.527000000000000
linked 22353 C22353A|(surface_glycoprotein:C791A(A264D)) 57925 0.994 29995 0.994 20883 0.993 57133 0.993 74488 0.988 28212 0.987 22842 0.987 63851 0.993 15332 0.992 22884 0.994 44447 0.994 24952 0.992 24123 0.990 10687 0.988 17342 0.987 11496 0.989 5305 0.996 1768 0.995 10241 0.995 16781 0.995 31353 0.996 21603 0.996 27404 0.996 6376 0.996 24840 0.993 40265 0.993 13873 0.993 9225 0.995 11557 0.995 19945 0.987 24266 0.576 107125 0.988 32 7.529 23.811000000000000 31.340000000000000
22478 T22478C|(surface_glycoprotein:T916C(F306L)) 13 0.000 7 0.000 2 0.000 23 0.000 30 0.000 12 0.000 9 0.000 6 0.000 9 0.001 7 0.000 9 0.000 2 0.000 3 0.000 1 0.000 2 0.000 3 0.002 2 0.000 6 0.000 5 0.000 7 0.000 8 0.000 2 0.000 8 0.000 5 0.000 5 0.001 2 0.000 5 0.000 17236 0.417 23 0.000 29 0.419 0.002 0.421
22882 T22882A|(surface_glycoprotein:T1320A(N440K)) 1 0.000 6376 0.658 2 0.658 0 0.658
22885 T22885C|(surface_glycoprotein:T1323C(L441L)) 1 0.000 1 0.000 1 0.000 6375 0.658 4 0.658 0.0 0.658
22907 T22907C|(surface_glycoprotein:TAT1345-1347CGT(Y449R)) 6375 0.658 1 0.658 0 0.658
22908 A22908G|(surface_glycoprotein:TAT1345-1347CGT(Y449R)) 6375 0.658 1 0.658 0 0.658
linked 22910 A22910G|(surface_glycoprotein:A1348G(N450D)) 1068 0.999 1570 0.997 31 1.000 382 1.000 647 1.000 6257 0.998 775 0.996 18237 0.999 30 1.000 817 1.000 2210 0.999 33 1.000 664 0.998 103 1.000 5980 0.998 3137 0.998 4 1.000 7 1.000 14 1.000 2454 0.998 7460 0.999 5130 0.998 13 1.000 1229 0.998 238 0.996 327 0.997 648 0.998 1 1.000 11 1.000 9665 0.998 556 0.998 31 7.987 22.975 30.962000000000000
22917 T22917A|(surface_glycoprotein:T1355A(L452Q)) 6375 0.658 1 0.658 0 0.658
22920 A22920T|(surface_glycoprotein:A1358T(Y453F)) 1 0.003 1 0.000 1 0.001 6373 0.655 4 0.655 0.004 0.659
22929 T22929A|(surface_glycoprotein:T1367A(F456Y)) 6447 0.657 1 0.657 0 0.657
22942 T22942G|(surface_glycoprotein:T1380G(N460K)) 2 0.001 1 0.000 1 0.000 2 0.000 1 0.001 6435 0.655 6 0.656 0.001 0.657
23013 A23013C|(surface_glycoprotein:A1451C(E484A)) 6368 0.658 1 0.658 0 0.658
23018 T23018A|(surface_glycoprotein:T1456A(F486I)) 6359 0.657 1 0.657 0 0.657
23054 RATG13 C23054T|(surface_glycoprotein:CAA1492-1494TAT(Q498Y)) 6367 0.658 1 0.658 0 0.658
23056 A23056T|(surface_glycoprotein:CAA1492-1494TAT(Q498Y)) 6367 0.658 1 0.658 0 0.658
23064 A23064C|(surface_glycoprotein:A1502C(N501T)) 6356 0.657 1 0.657 0 0.657
23073 G23073A|(surface_glycoprotein:G1511A(G504D)) 2 0.000 1 0.000 6374 0.659 3 0.659 0.0 0.659
ubiq 23222 G23222A|(surface_glycoprotein:G1660A(E554K)) 168427 0.998 134386 0.998 64567 0.998 215605 0.998 158672 0.997 120285 0.997 85267 0.997 163429 0.997 66878 0.997 68023 0.997 68382 0.997 71082 0.997 82811 0.997 1 1.000 77470 0.997 51346 0.997 26252 0.998 30259 0.998 1 1.000 2200 0.998 518 0.996 95668 0.997 60276 0.997 82196 0.998 72515 0.998 43510 0.997 58220 0.997 138812 0.998 68243 0.998 14690 0.998 11487 0.998 60449 0.996 101134 0.996 173011 0.996 10898 0.996 35 8.977000000000000 25.932000000000000 34.909
ubiq 23271 C23271T|(surface_glycoprotein:C1709T(A570V)) 199414 0.997 163133 0.998 65003 0.997 248408 0.998 186540 0.995 151219 0.995 105005 0.995 170637 0.996 76405 0.997 75616 0.997 85538 0.997 81894 0.997 89175 0.995 1 1.000 90897 0.995 51877 0.995 32319 0.998 33167 0.997 1 1.000 2232 0.999 12669 0.997 118542 0.998 73054 0.998 93523 0.997 77438 0.997 69615 0.997 81271 0.997 166181 0.997 76563 0.997 28339 0.997 16150 0.997 61388 0.994 102650 0.994 189717 0.995 56466 0.997 35 8.974 25.913 34.887
ubiq 23403 Delta A23403G|(surface_glycoprotein:A1841G(D614G)) 198520 0.999 161855 0.999 64682 0.999 247163 0.999 184905 0.998 149554 0.998 104120 0.998 169396 0.998 75954 0.999 75112 0.999 85119 0.998 81255 0.998 88488 0.999 1 1.000 89923 0.998 51412 0.999 32117 0.999 32976 0.999 1 1.000 2220 0.999 12652 0.996 117512 0.998 72361 0.999 92950 0.999 77066 0.999 69299 0.998 80845 0.999 165343 0.999 76189 0.999 28262 0.999 16080 0.999 60528 0.998 101414 0.998 187506 0.998 56184 0.996 35 8.988 25.961 34.949
ubiq 23423 C23423T|(surface_glycoprotein:C1861T(P621S)) 224119 0.999 185238 0.999 64694 0.999 274991 0.999 207468 0.998 174003 0.998 119719 0.998 174254 0.999 83911 0.999 80885 0.999 99047 0.999 90295 0.999 93257 0.999 1 1.000 99944 0.999 51424 0.999 37418 0.999 35471 0.999 1 1.000 2237 1.000 23762 0.998 135218 0.999 80781 0.999 101693 0.999 81042 0.999 92231 0.999 100620 0.999 189098 0.999 83148 0.999 40252 0.999 20255 0.999 60594 0.999 101481 0.999 199594 0.999 92713 0.997 35 8.992000000000000 25.970000000000000 34.962000000000000
linked 23598 A23598G|(surface_glycoprotein:AAT2035-2037AGG(N679R)) 40472 0.326 15 0.000 2 0.000 11 0.000 8 0.001 15581 0.281 15055 0.205 62260 0.999 12534 0.472 8 0.000 11641 0.130 101942 0.999 2 0.001 26073 0.376 2 0.000 81073 0.784 4 0.200 1535 0.087 27874 0.607 23918 0.717 11464 0.205 32193 0.519 1 0.000 7 0.000 4 0.000 7386 0.180 6652 0.187 11 0.000 24559 0.337 7831 0.111 30 3.312 4.412 7.724
linked 23599 T23599G|(surface_glycoprotein:AAT2035-2037AGG(N679R)) 40472 0.327 15 0.000 2 0.000 11 0.000 8 0.001 15581 0.283 15055 0.205 62260 0.999 12534 0.473 8 0.000 11641 0.137 101942 0.999 2 0.001 26073 0.377 2 0.000 81073 0.785 4 0.200 1535 0.088 27874 0.609 23918 0.718 11464 0.206 32193 0.519 1 0.000 7 0.000 4 0.000 7386 0.181 6652 0.187 11 0.000 24559 0.338 7831 0.112 30 3.318 4.427 7.745000000000000
linked 23604 Delta C23604G|(surface_glycoprotein:C2042G(P681R)) 102351 0.999 58100 0.999 29711 0.999 95827 0.999 16 1.000 33922 0.999 63920 0.999 63242 0.999 22521 0.999 43954 0.999 73984 0.999 103683 0.999 2 1.000 64326 0.999 30338 0.998 98524 0.999 5 1.000 5574 0.999 41182 0.999 31482 0.999 47498 0.999 61640 0.999 10 1.000 46631 0.999 31613 0.999 7546 0.999 27696 0.999 34435 0.999 100948 0.999 59606 0.999 37453 0.999 31 7.991000000000000 22.981000000000000 30.972000000000000
23625 C23625T|(surface_glycoprotein:C2063T(A688V)) 6 0.000 2 0.000 4 0.000 1 0.000 2 0.000 2 0.000 2 0.000 3 0.000 3 0.000 3 0.000 2 0.000 2 0.000 8 0.000 1 0.000 1 0.000 2 0.000 2 0.000 1 0.000 25167 0.419 19 0.419 0.0 0.419
linked 23854 C23854A|(surface_glycoprotein:C2292A(N764K)) 103241 0.997 59442 0.997 29664 0.997 95877 0.997 5 0.238 34824 0.996 64173 0.996 63120 0.996 22479 0.997 44155 0.997 74336 0.997 103487 0.997 64308 0.997 30869 0.996 98473 0.997 5 1.000 5563 0.995 43033 0.997 33352 0.997 48938 0.997 61568 0.997 7 0.350 46803 0.997 31788 0.998 7611 0.998 27718 0.997 34427 0.998 100660 0.996 59582 0.995 37831 0.996 30 7.9720000000000000 20.528000000000000 28.500000000000000
23933 A23933G|(surface_glycoprotein:A2371G(T791A)) 1 0.000 3 0.000 10 0.000 6 0.000 4 0.000 16788 0.422 2 0.000 13 0.000 2 0.000 1 0.000 5 0.000 2 0.000 1 0.000 1 0.000 2 0.000 1 0.000 1 0.000 1 0.000 5 0.000 7 0.000 20 0.422 0.0 0.422
linked 23948 G23948T|(surface_glycoprotein:G2386T(D796Y)) 43655 0.993 9456 0.994 3 0.600 51772 0.993 97704 0.989 36706 0.988 37559 0.989 39552 0.994 9273 0.996 64708 0.994 24664 0.991 45874 0.993 13099 0.990 10263 0.994 1 1.000 39 1.000 43365 0.994 18472 0.995 7518 0.995 12591 0.994 9383 0.995 134850 0.993 38591 0.992 31806 0.995 6281 0.995 16994 0.994 3 1.000 18510 0.990 42374 0.991 73414 0.990 30 5.959 23.452000000000000 29.411000000000000
24376 T24376C|(surface_glycoprotein:T2814C(L938L)) 874 0.995 1 0.001 1 0.005 1 0.015 144 0.125 1 0.001 1 0.001 1 0.003 1 0.001 9 1.1360000000000000 0.011000000000000000 1.147
linked 24378 C24378T|(surface_glycoprotein:C2816T(S939F)) 1642 0.999 872 0.993 436 0.993 1251 0.995 201 0.966 157 0.994 220 0.987 724 0.997 66 1.000 404 0.995 1239 0.994 166 1.000 163 1.000 194 1.000 122 1.000 75 1.000 34 1.000 1 1.000 1139 0.997 856 0.997 915 0.999 490 0.996 677 0.996 389 0.995 144 1.000 65 0.985 47 0.979 869 0.985 595 0.992 65 1.000 30 7.961 21.873000000000000 29.834000000000000
linked 24424 A24424T|(surface_glycoprotein:A2862T(Q954H)) 1636 0.997 867 0.992 437 1.000 1246 0.995 203 0.995 156 0.994 221 0.995 721 0.994 66 1.000 403 0.995 1230 0.997 165 1.000 161 1.000 190 0.990 120 0.992 75 1.000 34 1.000 1 1.000 1133 0.996 843 0.995 912 0.998 488 0.998 674 0.994 390 1.000 143 1.000 66 1.000 48 1.000 871 0.994 590 0.992 65 1.000 30 7.959 21.944000000000000 29.903000000000000
linked 24469 T24469A|(surface_glycoprotein:T2907A(N969K)) 1635 0.996 871 0.995 435 0.995 1249 0.995 203 0.995 157 0.994 220 0.987 717 0.989 66 1.000 403 0.995 1216 0.990 165 1.000 162 0.994 194 0.990 120 0.992 75 1.000 34 1.000 1 1.000 1132 0.997 1210 0.994 890 0.996 486 0.994 683 0.994 385 0.990 146 0.993 66 1.000 47 0.979 870 0.993 593 0.995 68 1.000 30 7.96 21.872 29.832
linked 24819 A24819G|(surface_glycoprotein:A3257G(K1086R)) 68159 0.546 10 0.000 19 0.000 63824 0.357 20440 0.354 41902 0.998 166251 0.998 5124 0.120 2 0.000 26548 0.395 4 0.000 2 0.000 26555 0.439 5 0.000 8 0.000 2106 0.343 27118 0.740 12701 0.617 1988 0.132 52869 0.649 11 0.000 17585 0.528 1 0.000 5 0.000 9224 0.249 26205 0.114 1 1.000 10727 0.238 28 3.3550000000000000 5.462000000000000 8.817
linked 24872 G24872T|(surface_glycoprotein:G3310T(V1104L)) 103804 0.830 74183 0.997 43 0.000 119611 0.668 20476 0.353 41831 0.995 166016 0.997 30581 0.714 5 0.000 26581 0.395 13010 0.351 23 0.000 60365 0.998 14 0.000 30937 0.501 2105 0.343 30092 0.816 12807 0.615 8302 0.547 62516 0.767 70 0.000 17609 0.528 19951 0.627 11 0.000 9145 0.247 1 0.333 26257 0.114 1 1.000 10754 0.238 29 4.776 9.198 13.974
24919 C24919A|(surface_glycoprotein:C3357A(N1119K)) 32 0.000 20 0.000 38 0.000 34 0.000 22 0.000 16 0.000 89 0.001 19 0.000 11 0.001 39 0.001 14 0.000 14 0.000 19 0.000 24 0.000 27 0.000 3 0.000 8 0.000 3 0.000 4 0.000 30 0.000 94 0.001 11 0.000 7 0.000 14 0.000 10 0.000 84 0.000 1 1.000 24 0.001 28 1.001 0.004 1.005
linked 24990 C24990T|(surface_glycoprotein:C3428T(P1143L)) 124677 0.997 74209 0.997 165959 0.997 178502 0.997 1 1.000 57650 0.995 41793 0.995 165757 0.996 42716 0.997 17763 0.997 66904 0.996 36886 0.995 51355 0.996 60342 0.997 56430 0.997 1 1.000 61476 0.997 6117 0.998 36727 0.997 19900 0.997 15139 0.997 81251 0.997 162233 0.997 33203 0.996 31697 0.997 49243 0.997 36988 0.997 2 0.667 228123 0.995 1 1.000 45038 0.995 31 7.979000000000000 22.594 30.573
linked 25000 RATG13 C25000T|(surface_glycoprotein:C3438T(D1146D)) 124608 0.997 74210 0.997 165918 0.997 178423 0.996 1 1.000 57540 0.993 41692 0.992 165530 0.995 42709 0.997 17765 0.997 66834 0.995 36849 0.994 51296 0.995 60365 0.997 56435 0.997 1 1.000 61496 0.997 6123 0.999 36694 0.997 19892 0.997 15136 0.997 81255 0.997 161995 0.995 33153 0.995 31705 0.997 49243 0.997 36986 0.997 3 1.000 228211 0.995 1 1.000 45028 0.995 31 7.977000000000000 22.917 30.894000000000000
25469 Delta C25469T|(ORF3a_protein:C77T(S26L)) 6 0.000 4 0.000 8 0.000 4 0.000 3 0.000 3 0.000 2 0.000 1 0.000 2 0.000 3 0.000 1 0.000 3 0.000 2 0.000 1 0.000 1 0.000 1 0.000 1 0.000 8 0.000 1 0.333 19 0.333 0.0 0.333
linked 25479 T25479C|(ORF3a_protein:T87C(V29V)) 9 0.000 4 0.000 13 0.000 9 0.000 10 0.000 2 0.000 8 0.000 2 0.000 16130 0.454 2 0.000 1 0.000 1 0.000 4 0.000 3 0.000 2 0.000 4041 0.084 1 0.000 5 0.000 4 0.000 2 0.000 4 0.000 1 0.000 7 0.000 1 0.333 24 0.333 0.538 0.871
25546 C25546G|(ORF3a_protein:C154G(L52V)) 13 0.000 90674 0.998 14 0.000 29 0.000 35 0.000 8 0.000 12 0.000 2 0.000 2 0.000 5 0.000 4 0.000 3 0.000 1 0.000 5 0.000 2 0.000 2 0.000 2 0.000 5 0.000 7 0.000 3 0.000 7 0.000 1 0.000 19 0.000 3 0.000 24 0.998 0.0 0.998
linkedubiq 25584 C25584T|(ORF3a_protein:C192T(T64T)) 92697 0.998 91219 0.997 3 1.000 151098 0.997 83955 0.995 95580 0.995 31855 0.995 140474 0.996 738 0.995 62193 0.997 35732 0.996 65335 0.995 1 1.000 40234 0.995 15523 0.996 26700 0.997 38261 0.997 1 1.000 13163 0.998 1133 0.995 52691 0.997 36147 0.998 35349 0.997 48544 0.997 34440 0.997 66038 0.996 37773 0.997 23067 0.997 46478 0.997 9988 0.997 2 0.667 137269 0.995 3 1.000 6082 0.996 34 8.975 24.587 33.562
25585 C25585T|(ORF3a_protein:C193T(L65F)) 2 0.000 6 0.000 1 0.000 2 0.000 2 0.000 1 0.000 1 0.000 1 0.000 1 0.000 1 0.000 5 0.000 1 0.333 12 0.333 0.0 0.333
linked 25671 RATG13 C25671T|(ORF3a_protein:C279T(H93H)) 6 0.000 1 0.333 39206 0.261 2 0.000 56281 0.594 2 0.000 6 0.000 9554 0.154 19335 0.543 30094 0.463 1 1.000 20665 0.519 3 0.000 2 0.000 17930 0.470 5085 0.097 13305 0.374 4 0.000 1 0.000 32848 0.500 10394 0.452 36901 0.798 1097 0.110 1158 0.009 1 0.333 5996 0.995 26 2.121 5.8840000000000000 8.005000000000000
25672 C25672T|(ORF3a_protein:C280T(L94F)) 4 0.000 88914 0.979 2 0.000 4 0.000 2 0.000 3 0.000 8 0.000 2 0.000 1 0.000 3 0.000 1 0.000 4395 0.124 4 0.000 1 0.000 1 0.000 7 0.000 1 0.000 17 1.103 0.0 1.103
linked 25693 C25693T|(ORF3a_protein:C301T(L101F)) 6 0.000 9 0.000 6 0.000 85809 0.985 3 0.000 2 0.000 7 0.000 4 0.000 4 0.000 4 0.000 2 0.000 2 0.000 2 0.000 3 0.000 3 0.000 3 0.000 2 0.000 4712 0.127 1 0.000 1 0.000 705 0.010 4 0.000 1 0.000 5 0.000 7812 0.057 1 0.000 26 0.0 1.179 1.179
25710 C25710T|(ORF3a_protein:C318T(L106L)) 1 0.000 3 0.000 6 0.000 2 0.000 2 0.000 67397 0.469 1 0.000 2 0.000 1 0.000 1 0.000 1 0.000 1 0.000 1 0.000 3 0.001 3 0.000 15 0.469 0.001 0.47
25844 C25844T|(ORF3a_protein:C452T(T151I)) 727 0.597 1 0.597 0 0.597
26418 T26418C|(envelope_protein:T174C(V58V)) 2 0.000 2 0.000 5 0.000 2 0.000 2 0.000 3 0.000 25349 0.998 1 0.000 7 0.000 3 0.001 1 0.000 1 0.000 3 0.000 6 0.000 1 0.000 1 0.000 4 0.000 3 0.001 4 0.000 9 0.000 20 0.998 0.002 1.0
linked 26529 G26529C|(membrane_glycoprotein:G7C(D3H)) 10172 0.996 12888 0.996 5149 0.996 45903 0.996 9854 0.993 22160 0.994 19248 0.992 25245 0.994 8957 0.996 6107 0.996 43201 0.996 29924 0.995 6793 0.995 5265 0.994 13031 0.994 213 0.995 373 0.997 14 1.000 10761 0.997 18446 0.997 14998 0.997 19977 0.997 1131 0.996 56138 0.996 12768 0.995 10116 0.995 8227 0.995 608 0.997 38928 0.994 4936 0.992 21258 0.993 63330 0.994 32 7.962 23.888000000000000 31.850000000000000
linked 26577 C26577G|(membrane_glycoprotein:C55G(Q19E)) 10160 0.995 12768 0.997 5155 0.997 45930 0.996 9846 0.992 21937 0.992 19215 0.991 25266 0.996 8984 0.997 6041 0.996 43013 0.996 29939 0.995 6801 0.995 5273 0.995 12982 0.994 214 0.991 372 0.995 14 1.000 10751 0.997 18130 0.997 14749 0.996 19746 0.997 1134 0.995 56190 0.996 12778 0.996 10108 0.996 8249 0.996 609 0.998 38947 0.993 4947 0.995 21291 0.994 63372 0.994 32 7.967000000000000 23.883000000000000 31.85000000000000
linked 26610 A26610G|(membrane_glycoprotein:A88G(T30A)) 10175 0.997 12739 0.997 5157 0.998 46001 0.997 9882 0.996 22000 0.996 19296 0.995 25262 0.996 8975 0.996 6020 0.996 42963 0.995 29932 0.995 6801 0.996 5290 0.998 12982 0.995 215 0.995 374 1.000 14 1.000 10726 0.995 18074 0.996 16932 0.996 19735 0.997 1134 0.995 56188 0.996 12776 0.996 10118 0.996 8258 0.997 608 0.997 39029 0.995 4951 0.996 21295 0.995 63520 0.996 32 7.968 23.913000000000000 31.881000000000000
linked 26681 C26681T|(membrane_glycoprotein:C159T(F53F)) 12957 0.998 38638 0.998 27147 0.998 47325 0.999 23609 0.998 44333 0.996 28918 0.998 25345 0.999 9340 0.999 19118 0.998 67526 0.999 32468 0.999 10957 0.999 5311 0.999 22622 0.998 78 1.000 692 1.000 4715 0.998 122 1.000 10805 1.000 47462 0.998 51991 0.952 44722 0.999 5815 0.998 56373 0.999 18165 0.999 14788 0.999 9191 0.999 876 0.999 39146 0.998 9380 0.998 29838 0.998 63900 0.998 33 7.941 24.966 32.907000000000000
linked 26709 G26709A|(membrane_glycoprotein:G187A(A63T)) 12942 0.997 38798 0.996 27065 0.995 47300 0.998 23551 0.996 44392 0.995 28867 0.996 25316 0.998 9335 0.999 19152 0.997 67502 0.998 32426 0.998 10945 0.998 5310 0.999 22641 0.996 77 0.987 688 0.994 4704 0.996 121 0.992 10788 0.998 47710 0.997 54961 0.997 44954 0.998 5806 0.996 56324 0.999 18139 0.997 14768 0.998 9189 0.999 876 0.999 39144 0.998 9366 0.996 29837 0.997 63919 0.998 33 7.979000000000000 24.913 32.892000000000000
27015 C27015G|(membrane_glycoprotein:C493G(P165A)) 2 0.000 1 0.000 5 0.000 1 0.000 58866 0.998 2 0.000 3 0.000 1 0.000 1 0.000 3 0.000 1 0.000 4 0.000 3 0.000 13 0.998 0.0 0.998
linkedubiq 27259 A27259C|(ORF6_protein:A58C(R20R)) 77078 0.998 79332 0.998 229134 0.998 204783 0.997 256608 0.997 104801 0.997 122773 0.997 143275 0.996 78639 0.997 51794 0.997 61094 0.996 56921 0.998 120061 0.996 77909 0.997 30260 0.999 59137 0.997 47612 0.997 94797 0.998 51554 0.997 1 1.000 66510 0.997 108873 0.996 66878 0.997 33364 0.998 59796 0.998 49506 0.998 115970 0.997 37723 0.997 50284 0.998 39678 0.873 50596 0.998 66852 0.998 4 1.000 136913 0.997 145682 0.996 171768 0.995 36 8.977000000000000 26.803 35.78
27299 T27299G|(ORF6_protein:T98G(I33R)) 27 0.000 31 0.000 132 0.001 27 0.000 136 0.001 36 0.000 70 0.001 78 0.001 14 0.000 9 0.000 24 0.000 51 0.001 45 0.000 36 0.000 25 0.001 27 0.000 1 0.000 32 0.000 8 0.000 1 1.000 1 0.000 4 0.000 10 0.000 6 0.000 14 0.000 11 0.000 1 0.000 9 0.000 6 0.000 7 0.000 23 0.000 94 0.001 96 0.001 32 0.000 34 1.0020000000000000 0.006 1.0080000000000000
27345 A27345T|(ORF6_protein:A144T(K48N)) 12 0.000 22 0.000 91 0.000 15 0.000 109 0.000 27 0.000 37 0.000 37 0.000 5 0.000 7 0.000 11 0.000 20 0.000 25 0.000 22 0.000 11 0.000 15 0.000 23 0.000 9 0.000 1 1.000 7 0.000 3 0.000 3 0.000 3 0.000 5 0.000 1 0.000 3 0.000 12 0.000 66 0.000 49 0.000 4 0.000 30 1.0 0.0 1.0
27349 T27349G|(ORF6_protein:T148G(S50A)) 16 0.000 15 0.000 68 0.000 2 0.000 102 0.001 23 0.001 48 0.001 46 0.001 2 0.000 5 0.000 5 0.000 19 0.000 13 0.000 21 0.001 14 0.000 6 0.000 18 0.000 7 0.000 1 1.000 1 0.000 3 0.000 2 0.000 3 0.000 8 0.000 4 0.000 3 0.000 4 0.000 6 0.000 58 0.001 57 0.001 2 0.000 31 1.0020000000000000 0.005 1.0070000000000000
27352 C27352T|(ORF6_protein:C151T(Q51*)) 2 0.000 8 0.000 6 0.000 2 0.000 2 0.000 5 0.000 1 0.000 2 0.000 3 0.000 1 0.000 1 0.000 1 0.000 1 0.000 1 1.000 1 0.000 2 0.000 6 0.000 2 0.000 18 1.0 0.0 1.0
linkedubiq 27382 G27382C|(ORF6_protein:GAT181-183CTC(D61L)) 43904 0.999 40591 0.998 159246 0.998 27056 0.999 106333 0.997 31259 0.997 43817 0.997 84756 0.997 23147 0.998 23238 0.997 30496 0.997 52380 0.997 35950 0.997 37785 0.996 30128 0.996 20645 0.996 71393 0.997 28517 0.998 1 1.000 7 1.000 5686 0.997 21563 0.997 9059 0.998 12129 0.998 21925 0.997 1 1.000 15374 0.998 9072 0.998 18326 0.998 22148 0.998 3 1.000 108884 0.997 57038 0.996 6881 0.996 34 8.978 24.941 33.919
linkedubiq 27383 A27383T|(ORF6_protein:GAT181-183CTC(D61L)) 43904 0.999 40591 0.998 159246 0.998 27056 0.999 106333 0.997 31259 0.997 43817 0.997 84756 0.997 23147 0.998 23238 0.996 30496 0.997 52380 0.997 35950 0.997 37785 0.996 30128 0.996 20645 0.996 71393 0.997 28517 0.998 1 1.000 7 1.000 5686 0.997 21563 0.997 9059 0.998 12129 0.998 21925 0.997 1 1.000 15374 0.998 9072 0.998 18326 0.998 22148 0.998 3 1.000 108884 0.997 57038 0.996 6881 0.996 34 8.978 24.94 33.918
linkedubiq 27384 T27384C|(ORF6_protein:GAT181-183CTC(D61L)) 43904 0.998 40591 0.998 159246 0.998 27056 0.999 106333 0.997 31259 0.997 43817 0.997 84756 0.997 23147 0.998 23238 0.996 30496 0.997 52380 0.997 35950 0.997 37785 0.996 30128 0.996 20645 0.996 71393 0.997 28517 0.998 1 1.000 7 1.000 5686 0.997 21563 0.997 9059 0.998 12129 0.998 21925 0.997 1 1.000 15374 0.998 9072 0.998 18326 0.998 22148 0.998 3 1.000 108884 0.997 57038 0.996 6881 0.996 34 8.978 24.939 33.917
27462 T27462C|(ORF7a_protein:T69C(C23C)) 4 0.000 8 0.000 30 0.000 5 0.000 16 0.000 7 0.000 6 0.000 9 0.000 3 0.000 4 0.000 7 0.000 2 0.000 2 0.000 2 0.000 4 0.000 4 0.000 8 0.000 3 0.000 1 0.000 2 0.000 3 0.000 3 0.000 1 0.000 12 0.000 4 0.000 4 0.000 27 0.000 17619 0.306 1 0.000 29 0.306 0.0 0.306
27476 C27476T|(ORF7a_protein:C83T(T28I)) 3 0.000 2 0.000 8 0.000 6 0.000 4 0.000 1 0.000 85012 0.998 1 0.000 2 0.000 6 0.000 1 0.000 2 0.000 1 0.000 1 0.000 1 0.000 1 0.000 3 0.000 2 0.000 11 0.000 9 0.000 20 0.998 0.0 0.998
28077 G28077T|(ORF8_protein:G184T(V62L)) 2 0.000 3 0.000 7 0.000 2 0.000 4 0.000 10 0.000 7 0.000 7438 0.535 2 0.000 4 0.000 1 0.000 1 0.000 7 0.000 2 0.000 1 0.000 2 0.000 4 0.000 1 0.001 5 0.000 4 0.000 3 0.000 4 0.000 2 0.000 3 0.000 1 0.000 12 0.000 12 0.000 1 0.000 28 0.535 0.001 0.536
28253 Delta C28253T|(ORF8_protein:C360T(F120F)) 4 0.000 16 0.000 12 0.000 24 0.000 23 0.000 11 0.000 21 0.000 8 0.000 16 0.000 4 0.000 1 0.000 7 0.000 3 0.000 61683 0.418 10 0.000 8 0.000 3 0.000 9 0.000 8 0.000 7 0.000 4 0.000 5 0.000 3 0.000 1 0.000 6 0.000 4 0.000 9 0.000 32380 0.373 9 0.000 35 0.000 23 0.000 80626 0.310 16 0.000 33 1.101 0.0 1.101
28254 A28254C|(ORF8_protein:A361C(I121L)) 5 0.000 4 0.000 16 0.000 62 0.000 23 0.000 24 0.000 31 0.000 14 0.000 5 0.000 7 0.000 1 0.000 24 0.000 2 0.000 16944 0.115 2 0.000 1 0.000 1 0.000 4 0.000 5 0.000 9 0.000 3 0.000 2 0.000 2 0.000 1 0.000 4 0.000 7 0.000 2 0.000 4 0.000 32338 0.373 4 0.000 92 0.000 47 0.000 58435 0.225 76 0.000 34 0.713 0.0 0.713
linkedubiq 28271 A28271T 131690 0.998 288729 0.998 332083 0.998 502299 0.998 312874 0.998 213986 0.997 293187 0.997 410000 0.998 196945 0.999 86412 0.998 34184 0.998 268801 0.998 177162 0.998 1 1.000 147256 0.998 230222 0.998 294701 0.999 130104 0.998 105115 0.999 251983 0.998 304939 0.998 167517 0.999 116337 0.998 114931 0.998 126048 0.999 268576 0.999 167087 0.999 196751 0.999 102143 0.999 86660 0.999 209606 0.999 548200 0.998 285861 0.998 259544 0.998 361314 0.998 35 8.986 25.955000000000000 34.941
28289 C28289T|(nucleocapsid_phosphoprotein:C16T(P6S)) 8 0.000 18 0.000 9 0.000 33 0.000 19 0.000 15 0.000 27 0.000 88651 0.450 1 0.000 2 0.000 13 0.000 5 0.000 4 0.000 9 0.000 12 0.000 5 0.000 14 0.000 7 0.000 6 0.000 4 0.000 5 0.000 6 0.000 9 0.000 6 0.000 20 0.000 1 0.000 4 0.000 7 0.000 44 0.000 18 0.000 11 0.000 23 0.000 32 0.45 0.0 0.45
linked 28297 RATG13 T28297C|(nucleocapsid_phosphoprotein:T24C(N8N)) 9 0.000 19 0.000 240260 0.722 43 0.000 126711 0.404 135569 0.632 28673 0.098 25 0.000 117781 0.597 7503 0.087 2 0.000 111184 0.413 92256 0.520 65937 0.447 230127 0.998 182504 0.618 130079 0.998 13 0.000 69 0.000 56115 0.184 17164 0.102 32107 0.275 67453 0.586 32191 0.255 115003 0.428 161163 0.963 87276 0.443 16685 0.163 62742 0.723 139714 0.666 547916 0.997 234922 0.820 232329 0.893 281452 0.777 34 3.037 11.772000000000000 14.809000000000000
linkedubiq 28311 C28311T|(nucleocapsid_phosphoprotein:C38T(P13L)) 131756 0.998 288896 0.999 332272 0.999 502689 0.999 313083 0.998 214111 0.997 293363 0.998 409954 0.998 196922 0.998 86437 0.998 34181 0.998 268810 0.998 177162 0.998 1 1.000 147277 0.997 230240 0.998 294657 0.998 130122 0.999 105119 0.998 252019 0.999 304930 0.998 167501 0.998 116382 0.998 114950 0.998 126032 0.999 268501 0.998 167036 0.998 196723 0.998 102108 0.998 86663 0.999 209540 0.998 548080 0.997 285770 0.997 259523 0.997 361300 0.997 35 8.982000000000000 25.951 34.933
linkedubiq 28362 GAGAACGCA28362-28370del|(nucleocapsid_phosphoprotein:GGAGAACGCAGT88-99GGTdel(GERS30-33Gdel)) 131426 0.999 287676 0.999 331485 0.999 501859 0.999 312512 0.998 213280 0.998 292770 0.998 409534 0.998 196949 0.999 86059 0.999 34168 0.999 268645 0.998 176922 0.998 1 1.000 146828 0.998 230121 0.998 257355 0.873 130078 0.999 105162 0.999 252253 0.999 305309 0.999 166923 0.999 115879 0.999 114498 0.999 125666 0.999 268405 0.999 166843 0.999 195848 0.999 101738 0.999 86457 0.999 209546 0.999 547993 0.997 285351 0.997 258914 0.997 360846 0.997 35 8.987 25.837 34.824
linked 28432 C28432T|(nucleocapsid_phosphoprotein:C159T(F53F)) 10 0.000 23 0.000 167858 0.506 24 0.000 126816 0.405 135485 0.633 15047 0.051 19 0.000 5 0.000 1 0.000 5 0.000 55154 0.205 6 0.000 66139 0.450 14 0.000 182472 0.619 130202 0.999 4 0.000 13 0.000 20 0.000 10967 0.066 31920 0.275 8580 0.075 10715 0.085 115026 0.428 76943 0.460 9 0.000 4 0.000 62637 0.723 37952 0.181 57 0.000 56347 0.197 199651 0.769 268331 0.741 34 2.283 5.585 7.868
linkedubiq 28881 G28881A|(nucleocapsid_phosphoprotein:AGG607-609AAA(R203K)) 22100 0.995 59740 0.996 48467 0.997 74260 0.998 75137 0.993 48181 0.995 48238 0.993 57448 0.999 20925 0.999 17898 0.999 15108 0.998 36942 0.998 62792 0.998 20605 0.999 18582 0.999 31713 0.998 43675 0.998 20335 0.998 13678 0.999 37290 0.999 97521 0.999 32401 0.999 33419 0.999 34989 0.999 37440 0.999 7462 0.999 36578 0.999 35103 0.999 71436 0.999 20766 0.999 15886 0.998 11190 0.999 73144 0.998 49118 0.998 52585 0.998 77178 0.998 36 8.985 26.942 35.927
linkedubiq 28882 G28882A|(nucleocapsid_phosphoprotein:AGG607-609AAA(R203K)) 22100 0.995 59740 0.996 48467 0.997 74260 0.998 75137 0.993 48181 0.995 48238 0.993 57448 0.999 20925 0.999 17898 0.999 15108 0.998 36942 0.998 62792 0.998 20605 0.999 18582 0.999 31713 0.998 43675 0.998 20335 0.998 13678 0.999 37290 0.999 97521 0.999 32401 0.999 33419 0.999 34989 0.999 37440 0.999 7462 0.999 36578 0.999 35103 0.999 71436 0.999 20766 0.999 15886 0.998 11190 0.999 73144 0.998 49118 0.998 52585 0.998 77178 0.998 36 8.985 26.942 35.927
linked 28883 G28883C|(nucleocapsid_phosphoprotein:G610C(G204R)) 18853 0.849 4542 0.076 48506 0.998 25354 0.341 75436 0.997 48304 0.997 32050 0.660 57443 0.999 20922 0.999 10543 0.589 11545 0.763 9796 0.265 54919 0.873 20603 0.999 18584 0.999 31718 0.999 43693 0.999 20342 0.998 13678 0.999 37274 0.999 22965 0.235 18880 0.582 33414 0.999 34989 0.999 25962 0.693 7175 0.961 36583 0.999 35103 0.999 71441 0.999 14373 0.692 15891 0.999 8834 0.788 73148 0.998 49113 0.997 52593 0.998 77142 0.998 36 8.067000000000000 22.267 30.334000000000000
linked 28958 C28958A|(nucleocapsid_phosphoprotein:C685A(Q229K)) 22224 0.998 60096 0.998 13110 0.270 74341 0.998 41670 0.551 18769 0.387 44807 0.921 57435 0.998 20910 0.998 17947 0.999 15158 0.998 36986 0.998 35417 0.563 20603 0.998 18590 0.998 15043 0.473 39135 0.893 7178 0.352 5776 0.421 37326 0.999 74559 0.764 32373 0.998 32263 0.962 28431 0.809 35031 0.932 7461 0.999 20813 0.568 15178 0.431 62993 0.880 20828 0.999 8090 0.508 11189 0.999 73105 0.997 37233 0.756 11714 0.222 12588 0.162 36 6.9670000000000000 20.830000000000000 27.797000000000000
29025 C29025T|(nucleocapsid_phosphoprotein:C752T(A251V)) 1 0.000 4 0.000 2 0.000 4 0.000 1 0.000 2 0.000 3 0.000 2 0.000 2 0.000 2 0.000 16964 0.522 4 0.000 3 0.000 2 0.000 2 0.000 1 0.000 1 0.000 2 0.000 2 0.000 1 0.000 3255 0.202 3 0.000 3 0.000 9512 0.176 3 0.000 25 0.9 0.0 0.9
29079 A29079T|(nucleocapsid_phosphoprotein:A806T(N269I)) 5 0.000 19 0.000 18 0.000 33 0.000 34 0.000 22 0.000 19 0.000 24694 0.429 8 0.000 8 0.000 10 0.001 11 0.000 48 0.001 12 0.001 11 0.001 22 0.001 26 0.001 12 0.001 8 0.001 18 0.000 69 0.001 39 0.001 36 0.001 23 0.001 20 0.001 3 0.000 23 0.001 21 0.001 31 0.000 4 0.000 8 0.001 2 0.000 50 0.001 35 0.001 51 0.001 70 0.001 36 0.434 0.015000000000000000 0.449
linked 29164 T29164C|(nucleocapsid_phosphoprotein:T891C(D297D)) 10 0.000 35643 0.730 9 0.000 33809 0.447 29695 0.611 3680 0.076 5 0.000 1 0.000 3 0.000 1 0.000 3 0.000 27393 0.435 4 0.000 1 0.000 16702 0.524 4546 0.104 13191 0.647 7901 0.577 2 0.000 22929 0.235 2 0.000 1218 0.036 6585 0.187 2517 0.067 15825 0.431 19918 0.566 8467 0.118 1 0.000 7809 0.490 4 0.000 11880 0.241 42216 0.781 64753 0.836 33 2.018 6.121 8.139
29176 G29176T|(nucleocapsid_phosphoprotein:G903T(W301C)) 1 0.000 14 0.000 4 0.000 17 0.000 18 0.000 11 0.000 14 0.000 24685 0.429 5 0.000 2 0.000 5 0.000 13 0.000 26 0.000 6 0.000 3 0.000 10 0.000 14 0.000 5 0.000 2 0.000 13 0.000 26 0.000 15 0.000 11 0.000 11 0.000 6 0.000 3 0.000 13 0.000 7 0.000 15 0.000 4 0.000 2 0.000 23 0.000 7 0.000 18 0.000 20 0.000 35 0.429 0.0 0.429
29385 AC29385-29386del|(nucleocapsid_phosphoprotein:1112-1113del(371fs)) 37801 0.457 1 0.457 0 0.457
29421 C29421T|(nucleocapsid_phosphoprotein:C1148T(P383L)) 27 0.000 37 0.000 22 0.000 35 0.000 32 0.000 31 0.000 49 0.000 13 0.000 7 0.000 14 0.000 3 0.000 16 0.000 11 0.000 6 0.000 5 0.000 9 0.000 24 0.000 26 0.000 75 0.000 18 0.000 3 0.000 8 0.000 3 0.000 7 0.000 6 0.000 3 0.000 8 0.000 11 0.000 2 0.000 1 0.000 41 0.000 124801 0.364 20 0.000 33 0.364 0.0 0.364
linkedubiq 29510 A29510C|(nucleocapsid_phosphoprotein:A1237C(S413R)) 462647 0.999 669464 0.999 482467 0.999 675673 0.999 481698 0.999 385428 0.940 697335 0.999 550309 0.999 96504 0.999 165267 0.999 195010 0.884 843026 0.874 355423 0.999 199775 0.999 294880 0.999 270585 0.999 144037 0.298 837761 0.999 521634 0.999 1567650 0.999 598495 0.999 268505 0.999 262509 0.999 253827 0.999 262951 0.999 223349 0.999 135908 0.999 266907 0.999 681611 0.999 529474 0.999 128701 0.999 183667 0.999 2185056 0.999 801947 0.999 596050 0.912 424203 0.999 36 8.904 25.973000000000000 34.877000000000000
29614 C29614T|(ORF10_protein:C57T(C19C)) 21 0.000 22 0.000 20 0.000 20 0.000 28 0.000 12 0.000 27 0.000 122651 0.481 3 0.000 3 0.000 7 0.000 5 0.000 4 0.000 5 0.000 5 0.000 5 0.000 12 0.000 1 0.000 10 0.000 9 0.000 10 0.000 9 0.000 1 0.000 5 0.000 6 0.000 2 0.000 6 0.000 11 0.000 10 0.000 4 0.000 3 0.000 121 0.000 9 0.000 15 0.000 18 0.000 35 0.481 0.0 0.481
linkedubiq 29734 GAGGCCACGCGGAGTACGATCGAGTG29734-29759del 188752 0.999 275769 0.999 228846 0.999 335381 0.999 306476 0.998 172996 0.998 290300 0.998 254094 0.999 31328 0.999 54554 0.999 102999 0.999 226887 0.999 180823 0.999 56364 0.999 293553 0.999 116499 0.999 112167 0.750 295328 0.999 110105 0.999 132349 0.999 223200 0.999 206383 0.999 125992 0.999 110602 0.988 120813 0.999 71473 0.999 135542 0.999 102702 0.999 286572 0.999 196680 0.958 46237 0.999 99716 0.999 1997851 0.915 249028 0.998 308328 0.972 246845 0.998 36 8.953 26.594000000000000 35.547
29853 G29853-29853del 2 0.222 1 0.222 0 0.222