CH-1 - Complete Raw Mutation Data

Full TSV data with all sample columns and abundance information
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Complete Mutations Data

This table shows the complete data from the mutations.tsv file exactly as it appears in the source. Scroll horizontally to see all columns.

Linked/Ubiquitous Position Flagged Sequences Count Abundance Count.1 Abundance.1 Count.2 Abundance.2 Count.3 Abundance.3 Count.4 Abundance.4 Count.5 Abundance.5 Count.6 Abundance.6 Count.7 Abundance.7 Count.8 Abundance.8 Count.9 Abundance.9 Count.10 Abundance.10 Count.11 Abundance.11 Count.12 Abundance.12 Count.13 Abundance.13 Count.14 Abundance.14 Count.15 Abundance.15 Count.16 Abundance.16 Count.17 Abundance.17 Total samples Positives Sum Negatives Sum Total Sum Unnamed: 44 Unnamed: 45 Non-Cryptic Sewershed
ERR9861936 ERR9861977 ERR9862099 ERR9862221 ERR9862222 ERR9862449 ERR9861922 ERR9861943 ERR9861963 ERR9861984 ERR9862085 ERR9862106 ERR9862207 ERR9862208 ERR9862228 ERR9862229 ERR9862301 ERR9862530 Key
"('2021-07-11', '')" "('2021-07-03', '')" "('2021-06-14', '')" "('2021-05-24', '')" "('2021-05-25', '')" "('2021-02-16', '')" "('2021-07-11', '')" "('2021-07-11', '')" "('2021-07-03', '')" "('2021-07-03', '')" "('2021-06-14', '')" "('2021-06-14', '')" "('2021-05-24', '')" "('2021-05-25', '')" "('2021-05-24', '')" "('2021-05-25', '')" "('2021-02-16', '')" "('2021-02-16', '')" Cryptic Sewershed
2109.0 A2109C|(ORF1ab_polyprotein:A1844C(N615T))|(ORF1a_polyprotein:A1844C(N615T)) 182 0.456 2 0.004 2.0 0.46 0.0 0.46
2376.0 A2376G|(ORF1ab_polyprotein:A2111G(N704S))|(ORF1a_polyprotein:A2111G(N704S)) 2 0.667 2 0.003 7 0.002 3.0 0.672 0.0 0.672
2406.0 A2406G|(ORF1ab_polyprotein:A2141G(K714R))|(ORF1a_polyprotein:A2141G(K714R)) 2 0.005 772 0.977 5 0.001 6 0.002 4.0 0.983 0.002 0.985
2411.0 T2411A|(ORF1ab_polyprotein:T2146A(L716M))|(ORF1a_polyprotein:T2146A(L716M)) 2 0.667 11 0.003 2 0.005 21 0.005 16 0.004 5.0 0.67 0.014 0.684
2706.0 C2706T|(ORF1ab_polyprotein:C2441T(T814I))|(ORF1a_polyprotein:C2441T(T814I)) 32 1.0 17 0.425 2.0 1.425 0.0 1.425
linked 3037.0 "RATG13,Delta" C3037T|(ORF1ab_polyprotein:C2772T(F924F))|(ORF1a_polyprotein:C2772T(F924F)) 3 1.0 1678 0.988 3 0.75 3764 0.991 4163 0.99 26749 0.96 11 0.733 3685 0.965 5 0.714 886 0.994 20 0.571 18 0.783 1029 0.99 17 0.81 4789 0.946 6872 0.922 16.0 5.679 8.428 14.107
3096.0 C3096T|(ORF1ab_polyprotein:C2831T(S944L))|(ORF1a_polyprotein:C2831T(S944L)) 729 0.442 4 0.001 11 0.004 3.0 0.443 0.004 0.447
3152.0 G3152T|(ORF1ab_polyprotein:G2887T(G963C))|(ORF1a_polyprotein:G2887T(G963C)) 909 0.391 47 0.002 5 0.002 3 0.001 4.0 0.393 0.003 0.396
3582.0 G3582A|(ORF1ab_polyprotein:G3317A(S1106N))|(ORF1a_polyprotein:G3317A(S1106N)) 394 0.583 4 0.002 2.0 0.585 0.0 0.585
3992.0 C3992A|(ORF1ab_polyprotein:C3727A(L1243M))|(ORF1a_polyprotein:C3727A(L1243M)) 354 0.986 2 0.003 4 0.018 3.0 0.989 0.018 1.007
4354.0 G4354T|(ORF1ab_polyprotein:G4089T(E1363D))|(ORF1a_polyprotein:G4089T(E1363D)) 6 0.002 4126 0.377 78 0.002 3 0.002 22 0.007 5.0 0.381 0.009 0.39
4861.0 T4861G|(ORF1ab_polyprotein:T4596G(D1532E))|(ORF1a_polyprotein:T4596G(D1532E)) 3 0.75 4 0.002 94 0.005 2 0.001 108 0.006 5.0 0.757 0.007 0.764
5339.0 C5339T|(ORF1ab_polyprotein:C5074T(P1692S))|(ORF1a_polyprotein:C5074T(P1692S)) 2767 0.992 2093 0.91 3 0.001 3.0 1.902 0.001 1.903
linked 5388.0 C5388A|(ORF1ab_polyprotein:C5123A(A1708D))|(ORF1a_polyprotein:C5123A(A1708D)) 200 0.087 2199 0.988 4058 0.991 13163 0.8 1082 0.997 2 0.4 15 0.577 13 0.684 2 0.667 15 0.682 116 0.007 11.0 2.866 4.014 6.88
5447.0 G5447A|(ORF1ab_polyprotein:G5182A(V1728I))|(ORF1a_polyprotein:G5182A(V1728I)) 7 0.001 5 0.002 1739 0.424 3.0 0.427 0.0 0.427
5698.0 T5698A|(ORF1ab_polyprotein:T5433A(P1811P))|(ORF1a_polyprotein:T5433A(P1811P)) 1135 0.475 4 0.002 2.0 0.477 0.0 0.477
6094.0 G6094T|(ORF1ab_polyprotein:G5829T(Q1943H))|(ORF1a_polyprotein:G5829T(Q1943H)) 424 0.358 8 0.007 7 0.013 3.0 0.365 0.013 0.378
6110.0 A6110G|(ORF1ab_polyprotein:A5845G(K1949E))|(ORF1a_polyprotein:A5845G(K1949E)) 1168 0.988 22 0.733 2.0 1.721 0.0 1.721
6939.0 A6939G|(ORF1ab_polyprotein:A6674G(K2225R))|(ORF1a_polyprotein:A6674G(K2225R)) 13 1.0 3 1.0 2.0 2.0 0.0 2.0
7740.0 A7740C|(ORF1ab_polyprotein:A7475C(D2492A))|(ORF1a_polyprotein:A7475C(D2492A)) 4 0.002 2 1.0 2 0.001 2 0.007 4.0 1.003 0.007 1.00999999999999
7760.0 G7760T|(ORF1ab_polyprotein:G7495T(G2499C))|(ORF1a_polyprotein:G7495T(G2499C)) 6 0.003 2 1.0 3 0.273 4 0.002 3 0.003 4 0.034 6.0 1.281 0.034 1.315
7821.0 C7821T|(ORF1ab_polyprotein:C7556T(S2519F))|(ORF1a_polyprotein:C7556T(S2519F)) 8 0.003 4 0.001 2 0.667 3.0 0.671 0.0 0.671
8696.0 G8696T|(ORF1ab_polyprotein:G8431T(A2811S))|(ORF1a_polyprotein:G8431T(A2811S)) 4 0.001 2 0.667 2 0.002 3.0 0.67 0.0 0.67
9430.0 C9430T|(ORF1ab_polyprotein:C9165T(I3055I))|(ORF1a_polyprotein:C9165T(I3055I)) 5429 0.993 2 0.002 351 0.464 4 0.001 4.0 1.46 0.0 1.46
9927.0 T9927G|(ORF1ab_polyprotein:T9662G(M3221R))|(ORF1a_polyprotein:T9662G(M3221R)) 2 0.667 2 0.003 2 0.002 3 0.003 4.0 0.672 0.003 0.675
9969.0 C9969A|(ORF1ab_polyprotein:C9704A(A3235E))|(ORF1a_polyprotein:C9704A(A3235E)) 2 0.667 2 0.003 4 0.004 3.0 0.674 0.0 0.674
10127.0 A10127C|(ORF1ab_polyprotein:A9862C(T3288P))|(ORF1a_polyprotein:A9862C(T3288P)) 2 1.0 8 0.001 40 0.001 8 0.002 4.0 1.002 0.002 1.004
11001.0 C11001T|(ORF1ab_polyprotein:C10736T(T3579I))|(ORF1a_polyprotein:C10736T(T3579I)) 3814 0.989 267 1.0 389 0.141 1173 0.14 2 0.002 5.0 2.27 0.002 2.272
11375.0 G11375A|(ORF1ab_polyprotein:G11110A(G3704S))|(ORF1a_polyprotein:G11110A(G3704S)) 7396 0.997 20 1.0 346 0.057 285 0.124 16 0.012 5.0 2.178 0.012 2.19
17966.0 C17966A|(ORF1ab_polyprotein:C17702A(S5901Y)) 10 0.002 2 0.001 3 0.6 3.0 0.603 0.0 0.603
18777.0 A18777T|(ORF1ab_polyprotein:A18513T(Q6171H)) 2 0.667 21 0.002 733 0.01 10 0.001 12 0.01 5.0 0.679 0.011 0.69
20268.0 A20268G|(ORF1ab_polyprotein:A20004G(L6668L)) 18 0.947 5 1.0 2.0 1.947 0.0 1.947
21575.0 C21575T|(surface_glycoprotein:C13T(L5F)) 29 0.829 236 0.47 2.0 1.299 0.0 1.299
linked 21991.0 TTA21991-21993del|(surface_glycoprotein:GTTTAT427-432GTTdel(VY143-144Vdel)) 113 1.0 241 0.489 637 0.994 230 0.996 10212 0.994 34054 0.861 3 1.0 5316 0.994 4 1.0 9.0 5.334 2.99399999999999 8.328
22021.0 G22021A|(surface_glycoprotein:G459A(M153I)) 113 1.0 351 0.711 444 0.693 3.0 2.404 0.0 2.404
22104.0 G22104A|(surface_glycoprotein:G542A(G181E)) 116 0.975 360 0.702 455 0.691 3.0 2.368 0.0 2.368
22206.0 A22206G|(surface_glycoprotein:A644G(D215G)) 117 0.975 141 0.275 2.0 1.25 0.0 1.25
22304.0 T22304C|(surface_glycoprotein:T742C(Y248H)) 141 0.268 17 0.068 15 0.007 13 0.045 4.0 0.388 0.0 0.388
22317.0 G22317A|(surface_glycoprotein:G755A(G252D)) 160 0.994 386 0.732 454 0.701 9 0.036 73 0.253 5.0 2.71599999999999 0.0 2.71599999999999
22599.0 G22599T|(surface_glycoprotein:G1037T(R346I)) 343 0.9 16 0.048 22 0.077 3 0.001 4.0 1.025 0.001 1.02599999999999
linked 22600.0 A22600C|(surface_glycoprotein:A1038C(R346S)) 61 0.968 26 0.068 3 0.008 10 0.03 5 0.017 4 0.174 6.0 1.091 0.174 1.265
22812.0 A22812C|(surface_glycoprotein:A1250C(K417T)) 13 0.073 337 0.766 4 0.007 3.0 0.846 0.0 0.846
22896.0 T22896G|(surface_glycoprotein:T1334G(V445G)) 167 0.944 93 0.219 49 0.122 2 0.004 2 0.002 5.0 1.289 0.002 1.291
22910.0 A22910G|(surface_glycoprotein:A1348G(N450D)) 167 1.0 93 0.969 49 1.0 105 0.326 173 0.065 53 0.097 6.0 3.457 0.0 3.457
linked 22942.0 T22942G|(surface_glycoprotein:T1380G(N460K)) 167 1.0 93 0.969 48 0.98 118 0.331 190 0.066 2 0.105 2 0.333 7.0 3.346 0.438 3.784
23006.0 G23006A|(surface_glycoprotein:G1444A(G482S)) 171 0.994 96 0.96 49 0.961 114 0.32 183 0.064 5.0 3.299 0.0 3.299
23012.0 RATG13 G23012A|(surface_glycoprotein:G1450A(E484K)) 171 0.994 96 0.96 50 0.98 114 0.32 184 0.064 57 0.093 2 0.002 7.0 3.411 0.002 3.413
23016.0 G23016A|(surface_glycoprotein:G1454A(G485D)) 169 0.983 96 0.96 50 0.98 114 0.32 184 0.064 5.0 3.307 0.0 3.307
23019.0 T23019C|(surface_glycoprotein:T1457C(F486S)) 169 0.977 61 0.61 4 0.001 3.0 1.58799999999999 0.0 1.58799999999999
23042.0 T23042C|(surface_glycoprotein:T1480C(S494P)) 171 1.0 96 0.96 50 0.98 113 0.317 184 0.064 55 0.091 2 0.002 7.0 3.412 0.002 3.41399999999999
23055.0 A23055G|(surface_glycoprotein:A1493G(Q498R)) 167 1.0 92 0.989 49 0.98 3.0 2.969 0.0 2.969
linkedubiq 23063.0 A23063T|(surface_glycoprotein:A1501T(N501Y)) 163 0.976 91 0.978 50 1.0 353 0.989 2855 0.995 476 0.881 298 0.993 16 0.941 3 0.75 2 0.667 6 0.857 22 0.458 12.0 5.819 4.666 10.485
24047.0 G24047A|(surface_glycoprotein:G2485A(A829T)) 295 0.338 362 0.445 2.0 0.783 0.0 0.783
24378.0 C24378T|(surface_glycoprotein:C2816T(S939F)) 9452 0.993 5711 0.172 2.0 1.165 0.0 1.165
25049.0 G25049A|(surface_glycoprotein:G3487A(D1163N)) 1330 0.516 4030 0.103 2.0 0.619 0.0 0.619
25050.0 A25050T|(surface_glycoprotein:A3488T(D1163V)) 3 0.001 13542 0.345 753 0.003 162 0.003 4.0 0.346 0.006 0.352
25170.0 T25170C|(surface_glycoprotein:T3608C(L1203P)) 3 0.001 2360 0.695 2.0 0.696 0.0 0.696
25244.0 GTAATG25244-25249del|(surface_glycoprotein:3682-3687del(VM1228-1229del)) 1337 0.523 966 0.293 2234 0.994 959 0.367 4.0 2.177 0.0 2.177
25277.0 A25277T|(surface_glycoprotein:A3715T(S1239C)) 966 0.293 2240 0.998 49 0.008 3.0 1.291 0.008 1.299
25339.0 C25339T|(surface_glycoprotein:C3777T(D1259D)) 1325 0.516 7249 0.14 13 0.001 11 0.002 4.0 0.656 0.003 0.659
25731.0 C25731T|(ORF3a_protein:C339T(Y113Y)) 906 0.989 406 0.993 106 0.488 3.0 2.46999999999999 0.0 2.46999999999999
26257.0 G26257A|(envelope_protein:G13A(V5I)) 119 0.295 94 0.139 2.0 0.434 0.0 0.434
27577.0 C27577T|(ORF7a_protein:C184T(Q62*)) 2 0.5 5 0.086 2.0 0.586 0.0 0.586
28051.0 A28051G|(ORF8_protein:A158G(K53R)) 301 0.349 587 0.037 79 0.149 2 0.002 4.0 0.534999999999999 0.002 0.536999999999999
28833.0 C28833T|(nucleocapsid_phosphoprotein:C560T(S187L)) 818 0.976 48 0.552 52 0.05 3 0.003 2 0.009 5.0 1.578 0.012 1.59
29758.0 RATG13 T29758G 3434 0.334 29622 0.896 1220 0.647 2767 0.222 2349 0.104 75 0.001 24 0.002 14 0.004 5 0.002 2 0.004 5 0.001 10 0.008 4 0.024 4 0.004 24 0.005 12 0.001 16.0 2.204 0.055 2.259