FL-1 - Complete Raw Mutation Data

Full TSV data with all sample columns and abundance information
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Complete Mutations Data

This table shows the complete data from the mutations.tsv file exactly as it appears in the source. Scroll horizontally to see all columns.

Linked/Ubiquitous Position Flagged Sequences Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Total samples Positives Sum Negatives Sum Total Sum Non-Cryptic Sewershed
SRR21111182 SRR21384142 SRR20326087 SRR20680019 SRR20680023 SRR20680026 SRR20680146 SRR20680252 SRR21111183 SRR21384131 SRR22236461 SRR22236638 Key
"('2022-07-11', '776150.0')" "('2022-07-06', '776150.0')" "('2022-07-05/2022-07-06', '103000.0')" "('2022-07-11', '776150.0')" "('2022-07-10/2022-07-11', '59587.0')" "('2022-07-10/2022-07-11', '920528.0')" "('2022-07-11/2022-07-12', '220000.0')" "('2022-07-10/2022-07-11', '829725.0')" "('2022-07-10/2022-07-11', '103000.0')" "('2022-07-06', '776150.0')" "('2022-07-07/2022-07-08', '180000')" "('2022-07-11/2022-07-12', '591071')" Cryptic Sewershed
ubiq 670 Unnamed: 2 T670G|(ORF1ab_polyprotein:T405G(S135R))|(ORF1a_polyprotein:T405G(S135R)) 463470 0.998 164772 0.937 18116 0.997 90 0.732 1521370 0.997.1 235770 0.997.2 412036 0.997.3 1156924 0.996 28 1 114151 0.986 245693 0.997.4 646284 0.901 12 1.935 9.6 11.535 Unnamed: 32 Unnamed: 33 Unnamed: 34
ubiq 10029 C10029T|(ORF1ab_polyprotein:C9764T(T3255I))|(ORF1a_polyprotein:C9764T(T3255I)) 6275 0.998 1790 0.995 22 1 1297 0.997 1197 0.998 1041 0.992 2 1 1217 0.576 7 1 181 1 10 1.99299999999999 7.563 9.556
ubiq 10198 C10198T|(ORF1ab_polyprotein:C9933T(D3311D))|(ORF1a_polyprotein:C9933T(D3311D)) 2293 0.997 1190 0.997 121 1 53 1 70 1 50 1 6 1.994 4 5.994
ubiq 10447 RATG13 G10447A|(ORF1ab_polyprotein:G10182A(R3394R))|(ORF1a_polyprotein:G10182A(R3394R)) 1393 0.998 768 0.999 3 0.273 6024 0.998 10521 0.997 36 0.973 18703 0.998 4 1 3 1 6 1 10 1.99699999999999 7.239 9.236
ubiq 10449 C10449A|(ORF1ab_polyprotein:C10184A(P3395H))|(ORF1a_polyprotein:C10184A(P3395H)) 1392 0.997 764 0.993 3 0.273 6023 0.996 10533 0.998 36 0.973 18694 0.997 4 1 3 1 6 1 10 1.99 7.237 9.227
ubiq 11288 TCTGGTTTT11288-11296del|(ORF1ab_polyprotein:11023-11031del(SGF3675-3677del))|(ORF1a_polyprotein:11023-11031del(SGF3675-3677del)) 4 1 5091 0.997 424 0.991 1483 1 1084 0.996 16 1 6 1.99699999999999 3.987 5.984
ubiq 12880 C12880T|(ORF1ab_polyprotein:C12615T(I4205I))|(ORF1a_polyprotein:C12615T(I4205I)) 169 1 9 1 123 0.992 2 0.222 29744 0.998 6785 0.998 1611 0.998 26 1 7 1 5066 0.997 3 1 430 0.979 12 2 9.184 11.184
13466 A13466C|(ORF1ab_polyprotein:A13201C(N4401H))|(ORF1a_polyprotein:A13201C(N4401H)) 6 0.75 5 0.714 4 0.001 4 0.002 4 1.464 0.003 1.46699999999999
13469 G13469C|(ORF1ab_polyprotein:G13205C(R4402P))|(ORF1a_polyprotein:G13204C(G4402R)) 6 0.146 5 0.119 2 0.265 0 0.265
ubiq 15714 RATG13 C15714T|(ORF1ab_polyprotein:C15450T(L5150L)) 486347 0.997 66533 0.996 155 1 32 0.64 201810 0.997 2 1 32541 0.998 227698 0.996 16 1 10334 0.997 97737 0.997 11 1.99299999999999 8.625 10.618
ubiq 17410 C17410T|(ORF1ab_polyprotein:C17146T(R5716C)) 365404 0.997 29595 0.997 157 0.994 17 0.5 204240 0.997 28374 0.997 33736 0.997 185401 0.997 8 1 17726 0.996 6138 0.996 56028 0.997 12 1.994 9.471 11.465
22520 G22520A|(surface_glycoprotein:G958A(V320I)) 31284 0.998 10483 0.998 2 1.996 0 1.996
22564 C22564A|(surface_glycoprotein:C1002A(N334K)) 19869 0.997 7428 0.997 2 1.994 0 1.994
22599 RATG13 G22599C|(surface_glycoprotein:G1037C(R346T)) 22550 0.997 8209 0.997 2 1.994 0 1.994
22676 RATG13 G22676A|(surface_glycoprotein:G1114A(A372T)) 19036 0.996 6698 0.997 2 1.99299999999999 0 1.99299999999999
ubiq 23075 RATG13 T23075C|(surface_glycoprotein:T1513C(Y505H)) 464 0.998 218 0.995 198 1 16 1 26 1 58 1 28 1 72 1 12 1 9 1.99299999999999 7 8.993
ubiq 23403 Delta A23403G|(surface_glycoprotein:A1841G(D614G)) 180771 0.998 97170 0.997 118 1 40 0.8 169116 0.997 9016 0.997 16637 0.997 182519 0.997 10 1 19634 0.997 2875 0.998 63344 0.997 12 1.995 9.78 11.7749999999999
ubiq 23525 C23525T|(surface_glycoprotein:C1963T(H655Y)) 189570 0.998 103430 0.998 123 1 31 0.816 188151 0.998 9058 0.996 17050 0.998 198189 0.998 10 0.909 21363 0.998 3264 0.998 64728 0.998 12 1.996 9.709 11.705
25525 T25525C|(ORF3a_protein:T133C(W45R)) 1806 0.992 1931 0.472 2 1.464 0 1.464
25563 G25563T|(ORF3a_protein:G171T(Q57H)) 1639 0.997 1849 0.464 2 1.461 0 1.461
ubiq 28271 A28271T 48605 0.999 14616 0.998 26 1 2 0.4 13697 0.998 850 1 2124 0.998 32525 0.998 19624 0.999 3502 0.999 521 0.998 1097 0.992 12 1.99699999999999 9.382 11.379
ubiq 28311 C28311T|(nucleocapsid_phosphoprotein:C38T(P13L)) 47080 0.998 14972 0.997 30 1 2 0.333 13359 0.997 890 0.999 2256 0.998 32848 0.997 19552 0.997 3551 0.998 532 1 1174 0.995 12 1.995 9.314 11.309
ubiq 28362 GAGAACGCA28362-28370del|(nucleocapsid_phosphoprotein:GGAGAACGCAGT88-99GGTdel(GERS30-33Gdel)) 34158 0.997 12250 0.997 18 1 10213 0.996 1103 0.593 26979 0.997 14488 0.996 2936 0.996 414 0.998 710 0.781 10 1.994 7.357 9.351
ubiq 28881 G28881A|(nucleocapsid_phosphoprotein:AGG607-609AAA(R203K)) 68658 0.997 55524 0.997 1562 0.996 25 0.781 240688 0.997 71689 0.997 36756 0.997 414428 0.997 35035 0.996 22272 0.997 45831 0.997 174153 0.997 12 1.994 9.752 11.746
ubiq 28882 G28882A|(nucleocapsid_phosphoprotein:AGG607-609AAA(R203K)) 68658 0.997 55524 0.997 1562 0.996 25 0.781 240688 0.997 71689 0.997 36756 0.998 414428 0.997 35035 0.996 22272 0.997 45831 0.997 174153 0.997 12 1.994 9.753 11.747
ubiq 28883 G28883C|(nucleocapsid_phosphoprotein:G610C(G204R)) 68734 0.998 55583 0.998 1565 0.997 25 0.781 240823 0.997 71710 0.998 36761 0.998 414647 0.998 35090 0.998 22285 0.998 45877 0.998 174172 0.997 12 1.996 9.76 11.756