FL-2 - Complete Raw Mutation Data

Full TSV data with all sample columns and abundance information
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Complete Mutations Data

This table shows the complete data from the mutations.tsv file exactly as it appears in the source. Scroll horizontally to see all columns.

Unnamed: 0 Unnamed: 1 Unnamed: 2 Unnamed: 3 SRR23038270 Unnamed: 5 SRR23102921 Unnamed: 7 SRR23038438 Unnamed: 9 SRR23038441 Unnamed: 11 SRR23038458 Unnamed: 13 SRR23038462 Unnamed: 15 SRR23038508 Unnamed: 17 SRR23102826 Unnamed: 19 SRR23102919 Unnamed: 21 SRR23102994 Unnamed: 23 SRR23103050 Unnamed: 25 SRR23103062 Unnamed: 27 Unnamed: 28 Unnamed: 29 Unnamed: 30 Unnamed: 31 Unnamed: 32 Key Unnamed: 34
('2022-12-26/2022-12-27', '85700.0') ('2023-01-02/2023-01-03', '85700.0') ('2022-12-26/2022-12-27', '103000.0') ('2022-12-26/2022-12-27', '100000.0') ('2022-12-26/2022-12-27', '180000.0') ('2022-12-26/2022-12-27', '197000.0') ('2022-12-26/2022-12-27', '59587.0') ('2023-01-02/2023-01-03', '180000.0') ('2023-01-02/2023-01-03', '220000.0') ('2023-01-02/2023-01-03', '197000.0') ('2023-01-02/2023-01-03', '829725.0') ('2023-01-02/2023-01-03', '300000.0') Cryptic Sewershed
Linked/Ubiquitous Position Flagged Sequences Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Total samples Positives Sum Negatives Sum Total Sum Non-Cryptic Sewershed
210 Delta G210T 49289 0.999 331022 0.98 2 1.979 0 1.979
ubiq 241 Delta C241T 45231 0.999 244970 0.984 3 1 4 1 2 1 5 1.983 3 4.983
569 G569A|(ORF1ab_polyprotein:G304A(E102K))|(ORF1a_polyprotein:G304A(E102K)) 595940 0.675 2494494 0.88 2 1.555 0 1.555
1191 Delta C1191T|(ORF1ab_polyprotein:C926T(P309L))|(ORF1a_polyprotein:C926T(P309L)) 5420 0.787 16122 0.751 2 1.538 0 1.538
1267 Delta C1267T|(ORF1ab_polyprotein:C1002T(G334G))|(ORF1a_polyprotein:C1002T(G334G)) 5283 0.786 20967 0.756 2 1.542 0 1.542
2654 G2654A|(ORF1ab_polyprotein:G2389A(E797K))|(ORF1a_polyprotein:G2389A(E797K)) 3 0.016 110 0.254 2 0.27 0 0.27
2655 A2655G|(ORF1ab_polyprotein:A2390G(E797G))|(ORF1a_polyprotein:A2390G(E797G)) 94 0.487 284 0.654 2 1.141 0 1.141
ubiq 3037 RATG13,Delta C3037T|(ORF1ab_polyprotein:C2772T(F924F))|(ORF1a_polyprotein:C2772T(F924F)) 14410 0.998 27256 0.997 1834 0.998 7326 0.997 2142 0.998 11297 0.998 572 0.993 4177 0.999 736 1 2294 0.998 10 1.995 7.981 9.97599999999999
3431 G3431T|(ORF1ab_polyprotein:G3166T(V1056L))|(ORF1a_polyprotein:G3166T(V1056L)) 4152 0.224 19646 0.138 2 0.362 0 0.362
4447 A4447T|(ORF1ab_polyprotein:A4182T(E1394D))|(ORF1a_polyprotein:A4182T(E1394D)) 2 1 4 1 2 2 0 2
4822 A4822C|(ORF1ab_polyprotein:A4557C(Q1519H))|(ORF1a_polyprotein:A4557C(Q1519H)) 1244 0.287 172 0.059 2 0.346 0 0.346
5068 A5068G|(ORF1ab_polyprotein:A4803G(G1601G))|(ORF1a_polyprotein:A4803G(G1601G)) 79 0.345 74 0.261 2 0.606 0 0.606
5184 Delta C5184T|(ORF1ab_polyprotein:C4919T(P1640L))|(ORF1a_polyprotein:C4919T(P1640L)) 185 0.819 243 1 2 1.819 0 1.819
5648 RATG13 A5648C|(ORF1ab_polyprotein:A5383C(K1795Q))|(ORF1a_polyprotein:A5383C(K1795Q)) 21168 0.448 34726 0.246 2 0.694 0 0.694
5907 RATG13 C5907T|(ORF1ab_polyprotein:C5642T(T1881I))|(ORF1a_polyprotein:C5642T(T1881I)) 14971 0.664 90269 0.898 2 1.562 0 1.562
6027 C6027A|(ORF1ab_polyprotein:C5762A(P1921Q))|(ORF1a_polyprotein:C5762A(P1921Q)) 16 0.762 9 0.6 2 1.362 0 1.362
8841 C8841T|(ORF1ab_polyprotein:C8576T(T2859I))|(ORF1a_polyprotein:C8576T(T2859I)) 131 0.083 434 0.222 2 0.305 0 0.305
9678 Delta T9678C|(ORF1ab_polyprotein:T9413C(F3138S))|(ORF1a_polyprotein:T9413C(F3138S)) 7332 0.694 21949 0.874 2 1.568 0 1.568
10416 C10416T|(ORF1ab_polyprotein:C10151T(S3384L))|(ORF1a_polyprotein:C10151T(S3384L)) 197 0.099 981 0.855 2 0.954 0 0.954
11005 Delta C11005A|(ORF1ab_polyprotein:C10740A(H3580Q))|(ORF1a_polyprotein:C10740A(H3580Q)) 9 0.818 23 0.383 2 1.201 0 1.201
ubiq 11288 TCTGGTTTT11288-11296del|(ORF1ab_polyprotein:11023-11031del(SGF3675-3677del))|(ORF1a_polyprotein:11023-11031del(SGF3675-3677del)) 1109 0.961 2052 0.988 19 1 540 0.996 193 1 4188 0.998 136 1 10540 0.998 101 0.99 536 0.998 10 1.94899999999999 7.98 9.929
11440 T11440A|(ORF1ab_polyprotein:T11175A(N3725K))|(ORF1a_polyprotein:T11175A(N3725K)) 601 0.227 83 0.072 2 0.299 0 0.299
11556 A11556G|(ORF1ab_polyprotein:A11291G(E3764G))|(ORF1a_polyprotein:A11291G(E3764G)) 1354 0.487 504 0.48 2 0.967 0 0.967
11758 C11758T|(ORF1ab_polyprotein:C11493T(P3831P))|(ORF1a_polyprotein:C11493T(P3831P)) 31 0.013 235 0.21 2 0.223 0 0.223
12008 C12008T|(ORF1ab_polyprotein:C11743T(L3915F))|(ORF1a_polyprotein:C11743T(L3915F)) 19828 0.807 50364 0.865 2 1.672 0 1.672
14178 C14178A|(ORF1ab_polyprotein:C13914A(T4638T)) 27 0.18 19 0.111 2 0.291 0 0.291
ubiq 14408 Delta C14408T|(ORF1ab_polyprotein:C14144T(P4715L)) 1789 0.998 5738 0.997 105 1 500 0.998 36 1 94 1 1719 0.998 2 0.667 4811 0.996 176 1 18 1 11 1.995 8.659 10.654
16569 A16569G|(ORF1ab_polyprotein:A16305G(T5435T)) 1593 0.196 760 0.014 2 0.21 0 0.21
16915 C16915T|(ORF1ab_polyprotein:C16651T(L5551L)) 82953 0.75 330956 0.912 29 0.002 130 0.002 27 0.002 207 0.002 15 0.002 173 0.001 36 0.002 9 1.662 0.013 1.67499999999999
17496 Delta A17496G|(ORF1ab_polyprotein:A17232G(E5744E)) 207693 0.744 1017063 0.867 2 1.611 0 1.611
19572 C19572T|(ORF1ab_polyprotein:C19308T(Y6436Y)) 3498 0.713 18636 0.95 2 1.66299999999999 0 1.66299999999999
20396 Delta A20396G|(ORF1ab_polyprotein:A20132G(K6711R)) 3770 0.606 36530 0.969 2 0.001 3 1.575 0.001 1.57599999999999
20409 T20409A|(ORF1ab_polyprotein:T20145A(F6715L)) 3700 0.609 31997 0.867 2 1.476 0 1.476
20759 C20759T|(ORF1ab_polyprotein:C20495T(A6832V)) 600 0.552 4878 0.894 2 0.001 3 1.446 0.001 1.447
21618 Delta C21618G|(surface_glycoprotein:C56G(T19R)) 1520 0.662 3040 0.996 2 1.658 0 1.658
21622 RATG13 C21622T|(surface_glycoprotein:C60T(T20T)) 1489 0.659 3005 0.997 105 0.026 3 1.656 0.026 1.682
21632 T21632C|(surface_glycoprotein:T70C(L24L)) 112 0.051 556 0.189 2 0.24 0 0.24
21782 A21782G|(surface_glycoprotein:A220G(N74D)) 17 0.708 4 0.182 2 0.889999999999999 0 0.889999999999999
21792 Delta A21792C|(surface_glycoprotein:A230C(K77T)) 18 0.818 18 0.857 2 1.67499999999999 0 1.67499999999999
22812 A22812C|(surface_glycoprotein:A1250C(K417T)) 1856 0.944 6571 0.99 2 1.934 0 1.934
22910 A22910G|(surface_glycoprotein:A1348G(N450D)) 2042 0.913 5403 0.989 3 0.079 3 1.902 0.079 1.981
linkedubiq 22917 Delta T22917G|(surface_glycoprotein:T1355G(L452R)) 2265 0.997 5561 0.996 18 0.545 9 0.529 37 0.974 44 0.198 53 0.515 21 1 42 0.913 9 1.99299999999999 4.674 6.667
22995 C22995G|(surface_glycoprotein:C1433G(T478R)) 2453 0.96 6495 0.988 2 1.948 0 1.948
23056 RATG13 A23056C|(surface_glycoprotein:A1494C(Q498H)) 2407 0.933 2823 0.358 2 1.291 0 1.291
ubiq 23403 Delta A23403G|(surface_glycoprotein:A1841G(D614G)) 177430 0.998 276970 0.998 31508 0.998 78940 0.997 1523 0.997 37161 0.998 180971 0.997 3399 0.996 65609 0.997 10796 0.997 5 1 21189 0.998 12 1.996 9.975 11.971
ubiq 23525 C23525T|(surface_glycoprotein:C1963T(H655Y)) 189116 0.999 330467 0.981 34845 0.999 85610 0.999 1714 1 41157 0.999 202666 0.999 4159 0.998 82596 0.998 13192 0.999 3 1 24310 0.999 12 1.98 9.99 11.97
23604 Delta C23604G|(surface_glycoprotein:C2042G(P681R)) 114841 0.778 792674 0.92 2 1.698 0 1.698
24374 C24374T|(surface_glycoprotein:C2812T(L938F)) 1082 0.622 5941 0.813 2 1.435 0 1.435
24410 Delta G24410A|(surface_glycoprotein:G2848A(D950N)) 898 0.602 5257 0.814 2 1.416 0 1.416
25469 Delta C25469T|(ORF3a_protein:C77T(S26L)) 14279 0.976 61079 0.972 2 1.948 0 1.948
25513 C25513T|(ORF3a_protein:C121T(L41F)) 4772 0.31 1154 0.017 2 0.327 0 0.327
25521 C25521T|(ORF3a_protein:C129T(F43F)) 14697 0.971 62301 0.967 2 1.938 0 1.938
25936 C25936G|(ORF3a_protein:C544G(H182D)) 10547 0.992 47462 0.985 2 1.97699999999999 0 1.97699999999999
25979 G25979A|(ORF3a_protein:G587A(G196E)) 8972 0.962 39564 0.875 2 1.837 0 1.837
25991 G25991A|(ORF3a_protein:G599A(C200Y)) 9553 0.931 37633 0.744 2 1.675 0 1.675
26134 A26134G|(ORF3a_protein:A742G(T248A)) 12462 0.911 49933 0.957 2 1.86799999999999 0 1.86799999999999
26151 C26151T|(ORF3a_protein:C759T(S253S)) 12400 0.907 50188 0.954 85 0.031 1023 0.079 45 0.007 5 1.861 0.117 1.978
26155 GTT26155-26157del|(ORF3a_protein:763-765del(V255del)) 1349 0.107 31216 0.612 2 0.719 0 0.719
26158 GTTAATCCAGTAATG26158-26172del|(ORF3a_protein:766-780del(VNPVM256-260del)) 3145 0.275 531 0.01 2 0.285 0 0.285
26159 TT26159-26160del|(ORF3a_protein:767-768del(256fs)) 135 0.012 11637 0.214 2 0.226 0 0.226
26530 A26530G|(membrane_glycoprotein:A8G(D3G)) 108 0.062 1457 0.35 2 0.412 0 0.412
26533 C26533T|(membrane_glycoprotein:C11T(S4F)) 126 0.072 1107 0.26 2 0.332 0 0.332
26767 Delta T26767C|(membrane_glycoprotein:T245C(I82T)) 23454 0.8 113114 0.934 2 1.734 0 1.734
27384 T27384C|(ORF6_protein:T183C(D61D)) 10422 0.452 5577 0.071 2 0.523 0 0.523
27502 T27502G|(ORF7a_protein:T109G(S37A)) 3037 0.327 27851 0.435 2 0.762 0 0.762
27638 Delta T27638C|(ORF7a_protein:T245C(V82A)) 8 0.571 26 0.605 2 1.176 0 1.176
ubiq 27807 C27807T|(ORF7b:C52T(L18L)) 9566 0.998 14248 0.991 1225 0.999 19852 0.997 5817 0.998 49383 0.998 5309 0.997 86348 0.998 2014 0.997 4 1 32039 0.998 11 1.98899999999999 8.982 10.971
28087 CTGGTT28087-28092del|(ORF8_protein:GCTGGTTCT193-201GCTdel(AGS65-67Adel)) 54 0.064 475 0.166 2 0.23 0 0.23
28253 Delta C28253T|(ORF8_protein:C360T(F120F)) 11483 0.552 124454 0.861 729 0.025 3 1.413 0.025 1.438
28254 A28254C|(ORF8_protein:A361C(I121L)) 7636 0.366 28252 0.194 2 0.56 0 0.56
28271 Delta A28271-28271del 37775 0.855 449259 0.985 2 1.83999999999999 0 1.83999999999999
28461 Delta A28461G|(nucleocapsid_phosphoprotein:A188G(D63G)) 49049 0.866 422812 0.983 2 0.001 3 1.849 0.001 1.84999999999999
28816 A28816G|(nucleocapsid_phosphoprotein:A543G(Q181Q)) 319163 0.378 78034 0.053 2 0.431 0 0.431
28881 G28881C|(nucleocapsid_phosphoprotein:G608C(R203T)) 570644 0.923 2433057 0.93 2 1.853 0 1.853
28913 G28913T|(nucleocapsid_phosphoprotein:G640T(G214C)) 221637 0.556 1960249 0.881 2 1.437 0 1.437
29402 Delta G29402T|(nucleocapsid_phosphoprotein:G1129T(D377Y)) 13526 0.802 74459 0.923 4 0.001 3 1.725 0.001 1.726
29742 Delta G29742T 3277 0.832 16330 0.937 2 1.769 0 1.769