FL-3 - Complete Raw Mutation Data

Full TSV data with all sample columns and abundance information
← Back to Dashboard

Complete Mutations Data

This table shows the complete data from the mutations.tsv file exactly as it appears in the source. Scroll horizontally to see all columns.

SRR28776585(2444159) SRR28776628(1979323) SRR28816119(1213348) SRR28852859(2164376) SRR28852861(2392261) SRR28910465(2494473) SRR28910507(2075954) SRR29012319(2630963) SRR29012347(2126196) SRR29060414(863376) SRR29176543(1465581) SRR29176545(1330898) SRR29176554(1357716) SRR29206039(1902179) SRR29206040(1991249) SRR29206043(1962785) SRR29269277(942738) SRR29311050(1194794) SRR29311060(1319172) SRR29345381(2199848) SRR29345390(2649124) SRR29437950(2734374) SRR29437975(2884465) SRR29438019(2316231) SRR29647903(1543902)
('2024-04-14', '463672') ('2024-04-14', '277823') ('2024-04-16', '776150') ('2024-04-21', '277823') ('2024-04-21', '463672') ('2024-04-28', '463672') ('2024-04-28', '277823') ('2024-05-05', '277823') ('2024-05-05', '463672') ('2024-05-06', '776150') ('2024-05-14', '750000') ('2024-05-14', '277823') ('2024-05-14', '463672') ('2024-05-19', '277823') ('2024-05-19', '463672') ('2024-05-19', '750000') ('2024-05-27', '750000') ('2024-05-29', '277823') ('2024-05-29', '463672') ('2024-06-02', '277823') ('2024-06-02', '463672') ('2024-06-09', '463672') ('2024-06-09', '277823') ('2024-06-09', '750000') ('2024-06-18', '463672')
Sequences Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Total samples Positives Sum Negatives Sum Total Sum
47 T47-47del 1 1.000 1 1.0 0 1.0
81 A81C 20 0.001 15 0.001 22657 0.714 6 0.001 3 0.000 10 0.000 6 0.000 10 0.000 15 0.001 6874 0.441 4767 0.154 6 0.001 8 0.001 10 0.001 1 0.000 14 0.000 6 0.000 11 0.001 4 0.000 2 0.000 13 0.000 8 0.000 8 0.000 9 0.001 24 1.309 0.009000000000000001 1.3179999999999998
97 A97G 1 0.000 3 0.000 28056 0.845 2 0.000 1 0.000 2 0.000 3 0.000 7371 0.456 4925 0.157 1 0.000 1 0.000 4 0.000 3 0.000 1 0.000 3 0.000 1 0.000 3 0.000 17 1.458 0.0 1.458
100 C100A 10 0.000 3 0.000 14098 0.425 7 0.001 14 0.001 2 0.000 2 0.000 1 0.000 4 0.000 4 0.000 4925 0.157 1 0.000 1 0.000 2 0.000 2 0.000 2 0.000 3 0.000 4 0.000 6 0.000 7 0.000 6 0.000 2 0.000 22 0.582 0.002 0.584
100 C100T 1 0.000 2 0.000 13966 0.421 1 0.000 1 0.000 3 0.000 2 0.000 1 0.000 7368 0.456 3 0.000 4 0.000 2 0.000 2 0.000 2 0.000 2 0.000 1 0.000 1 0.000 17 0.877 0.0 0.877
178 A178G 2 0.000 1 0.000 33316 1.000 2 0.000 2 0.000 2 0.000 7377 0.455 4912 0.153 2 0.000 1 0.000 4 0.000 6 0.000 1 0.000 1 0.000 1 0.000 2 0.000 3 0.000 1 0.000 1 0.000 19 1.608 0.0 1.608
309 A309T|(ORF1ab_polyprotein:A44T(Q15L))|(ORF1a_polyprotein:A44T(Q15L)) 6 0.000 6 0.000 29258 0.878 1 0.000 2 0.000 9 0.000 5 0.000 7450 0.454 5 0.000 1 0.000 2 0.000 1 0.000 2 0.000 4 0.000 3 0.000 3 0.000 4 0.000 5 0.000 2 0.000 6 0.000 3 0.000 21 1.332 0.0 1.332
337 C337T|(ORF1ab_polyprotein:C72T(R24R))|(ORF1a_polyprotein:C72T(R24R)) 5121 0.154 1 0.000 7365 0.454 2 0.000 1 0.000 2 0.000 1 0.000 4 0.000 1 0.000 2 0.000 1 0.000 2 0.000 1 0.000 1 0.000 2 0.000 1 0.000 16 0.608 0.0 0.608
344 C344T|(ORF1ab_polyprotein:C79T(L27F))|(ORF1a_polyprotein:C79T(L27F)) 1 0.000 2 0.000 28096 0.844 1 0.000 1 0.000 5 0.000 8815 0.544 8373 0.267 1 0.000 1 0.000 2 0.000 3 0.000 3 0.000 13 1.655 0.0 1.655
347 G347A|(ORF1ab_polyprotein:G82A(V28I))|(ORF1a_polyprotein:G82A(V28I)) 3 0.000 1 0.000 13960 0.419 2 0.000 1 0.000 1 0.000 1 0.000 4929 0.157 1 0.000 3 0.000 3 0.000 5 0.000 19 0.001 1 0.000 14 0.576 0.001 0.577
361 A361G|(ORF1ab_polyprotein:A96G(G32G))|(ORF1a_polyprotein:A96G(G32G)) 2 0.000 9 0.000 8 0.000 1 0.000 4 0.000 2 0.000 4 0.000 3 0.000 8814 0.544 3447 0.110 3 0.000 5 0.000 11 0.000 3 0.000 2 0.000 2 0.000 4 0.000 9 0.000 16 0.001 5 0.000 5 0.000 21 0.654 0.001 0.655
378 RATG13 T378C|(ORF1ab_polyprotein:T113C(V38A))|(ORF1a_polyprotein:T113C(V38A)) 9 0.000 33186 0.998 6 0.000 1 0.000 2 0.000 17042 0.997 4928 0.157 2 0.000 1 0.000 1 0.000 1 0.000 5 0.000 4 0.000 5 0.000 3 0.000 15 2.152 0.0 2.152
437 A437G|(ORF1ab_polyprotein:A172G(K58E))|(ORF1a_polyprotein:A172G(K58E)) 1 0.000 961 0.974 2 0.974 0.0 0.974
451 T451C|(ORF1ab_polyprotein:T186C(P62P))|(ORF1a_polyprotein:T186C(P62P)) 962 0.976 1 0.976 0 0.976
linked 488 G488A|(ORF1ab_polyprotein:G223A(D75N))|(ORF1a_polyprotein:G223A(D75N)) 963 0.976 18 0.165 2 0.976 0.165 1.141
497 A497T|(ORF1ab_polyprotein:A232T(T78S))|(ORF1a_polyprotein:A232T(T78S)) 964 0.977 1 0.977 0 0.977
500 G500A|(ORF1ab_polyprotein:G235A(A79T))|(ORF1a_polyprotein:G235A(A79T)) 966 0.979 1 0.979 0 0.979
510 GTCATGTTA510-518del|(ORF1ab_polyprotein:GGTCATGTTATG244-255GTGdel(GHVM82-85Vdel))|(ORF1a_polyprotein:GGTCATGTTATG244-255GTGdel(GHVM82-85Vdel)) 962 0.975 1 0.975 0 0.975
521 GTT521-523del|(ORF1ab_polyprotein:256-258del(V86del))|(ORF1a_polyprotein:256-258del(V86del)) 963 0.976 1 0.976 0 0.976
539 C539T|(ORF1ab_polyprotein:C274T(L92F))|(ORF1a_polyprotein:C274T(L92F)) 966 0.977 3 0.019 2 0.977 0.019 0.996
554 T554A|(ORF1ab_polyprotein:T289A(Y97N))|(ORF1a_polyprotein:T289A(Y97N)) 967 0.979 1 0.006 1 0.007 3 0.986 0.006 0.992
575 C575A|(ORF1ab_polyprotein:C310A(L104I))|(ORF1a_polyprotein:C310A(L104I)) 961 0.973 1 0.973 0 0.973
606 RATG13 T606C|(ORF1ab_polyprotein:T341C(I114T))|(ORF1a_polyprotein:T341C(I114T)) 1 1.000 21 0.021 4 0.148 3 1.169 0 1.169
632 C632T|(ORF1ab_polyprotein:C367T(L123F))|(ORF1a_polyprotein:C367T(L123F)) 465 0.957 1 0.957 0 0.957
669 GTT669-671del|(ORF1ab_polyprotein:AGTTAC403-408AACdel(SY135-136Ndel))|(ORF1a_polyprotein:AGTTAC403-408AACdel(SY135-136Ndel)) 459 0.954 1 0.954 0 0.954
1369 T1369G|(ORF1ab_polyprotein:T1104G(I368M))|(ORF1a_polyprotein:T1104G(I368M)) 287 0.672 107 0.244 1 0.001 3 0.916 0.001 0.917
1376 C1376T|(ORF1ab_polyprotein:C1111T(P371S))|(ORF1a_polyprotein:C1111T(P371S)) 283 0.663 107 0.244 2 0.907 0 0.907
1616 C1616A|(ORF1ab_polyprotein:C1351A(L451I))|(ORF1a_polyprotein:C1351A(L451I)) 2 0.000 7 0.000 287 0.671 2 0.000 2 0.000 5 0.000 3 0.000 7 0.000 1445 0.999 4552 0.300 2 0.000 5 0.000 3 0.000 2 0.000 15218 0.434 2044 0.292 1 0.000 7 0.000 8 0.000 6 0.000 10 0.000 185 0.003 4 0.000 23 2.699 0.0 2.699
1779 C1779T|(ORF1ab_polyprotein:C1514T(S505F))|(ORF1a_polyprotein:C1514T(S505F)) 1 0.000 4 0.000 2 0.000 2 0.000 3 0.000 2 0.000 3 0.000 1 0.000 1455 0.988 1 0.000 1 0.000 1 0.000 3 0.000 8 0.000 1 0.000 2 0.000 2 0.000 8 0.000 5 0.000 5 0.000 1 0.000 21 0.988 0.0 0.988
1857 G1857A|(ORF1ab_polyprotein:G1592A(S531N))|(ORF1a_polyprotein:G1592A(S531N)) 2 0.000 1 0.000 1 0.000 1 0.000 1 0.000 1458 0.999 4479 0.302 15613 0.448 2064 0.287 1 0.000 1 0.000 4 0.000 175 0.003 13 2.039 0.0 2.039
1885 T1885C|(ORF1ab_polyprotein:T1620C(A540A))|(ORF1a_polyprotein:T1620C(A540A)) 4 0.000 6 0.000 4 0.000 1 0.000 6 0.000 4 0.000 1452 0.994 4467 0.301 2 0.000 4 0.000 1 0.000 15548 0.448 2021 0.282 3 0.000 4 0.000 3 0.000 10 0.000 176 0.003 3 0.000 19 2.028 0.0 2.028
1905 T1905-1905del|(ORF1ab_polyprotein:1640-1640del(547fs))|(ORF1a_polyprotein:1640-1640del(547fs)) 3 0.000 2 0.000 1 0.000 1 0.000 1 0.000 3 0.000 18739 0.547 1 0.000 2 0.000 25 0.000 7 0.000 1 0.000 12 0.547 0.0 0.547
2069 A2069G|(ORF1ab_polyprotein:A1804G(T602A))|(ORF1a_polyprotein:A1804G(T602A)) 2 0.000 35185 0.998 2 0.000 2 0.000 7 0.000 4 0.000 1 0.000 20667 0.997 1 0.000 2 0.000 1 0.000 5 0.000 1 0.000 1 0.000 6326 0.474 1 0.000 2 0.000 3 0.000 2 0.000 5 0.000 2 0.000 2 0.000 22 2.4690000000000003 0.0 2.4690000000000003
2075 G2075A|(ORF1ab_polyprotein:G1810A(G604S))|(ORF1a_polyprotein:G1810A(G604S)) 1 0.000 1 0.000 35221 0.999 1 0.000 1 0.000 20697 0.999 1 0.000 3 0.000 6345 0.475 2 0.000 2 0.000 11 2.473 0.0 2.473
2083 T2083G|(ORF1ab_polyprotein:T1818G(V606V))|(ORF1a_polyprotein:T1818G(V606V)) 6 0.000 10 0.001 35224 0.999 2 0.000 1 0.000 8 0.000 1 0.000 20589 0.993 1 0.000 7 0.000 1 0.000 6 0.000 4 0.000 3 0.000 6335 0.474 1 0.000 4 0.000 3 0.000 7 0.000 2 0.000 3 0.000 3 0.000 22 2.466 0.001 2.467
2232 C2232T|(ORF1ab_polyprotein:C1967T(A656V))|(ORF1a_polyprotein:C1967T(A656V)) 1 0.000 2 0.000 35018 0.999 22 0.001 20 0.001 20383 0.998 1 0.000 1 0.000 4 0.000 6191 0.475 2 0.000 1 0.000 4 0.000 1 0.000 14 2.472 0.002 2.4739999999999998
linked 2284 G2284T|(ORF1ab_polyprotein:G2019T(E673D))|(ORF1a_polyprotein:G2019T(E673D)) 1 0.125 1 0.000 1 0.000 1 0.000 2 0.000 1 0.000 2 0.000 1 0.000 2 0.000 2 0.000 2 0.000 1 0.000 1 0.000 1 0.000 14 0.125 0.0 0.125
2286 G2286T|(ORF1ab_polyprotein:G2021T(S674I))|(ORF1a_polyprotein:G2021T(S674I)) 1 0.000 1 1.000 1 0.000 1 0.000 2 0.000 1 0.000 1 0.000 1 0.000 3 0.000 1 0.000 2 0.000 1 0.000 4 0.000 13 1.0 0.0 1.0
2638 C2638T|(ORF1ab_polyprotein:C2373T(L791L))|(ORF1a_polyprotein:C2373T(L791L)) 1 0.000 2 0.000 1341 0.483 3 0.483 0.0 0.483
2675 C2675T|(ORF1ab_polyprotein:C2410T(P804S))|(ORF1a_polyprotein:C2410T(P804S)) 41 1.000 1 1.0 0 1.0
2699 A2699G|(ORF1ab_polyprotein:A2434G(T812A))|(ORF1a_polyprotein:A2434G(T812A)) 1 0.005 469 0.567 1 0.000 1 0.000 4 0.567 0.005 0.572
2745 A2745G|(ORF1ab_polyprotein:A2480G(D827G))|(ORF1a_polyprotein:A2480G(D827G)) 1 0.000 1 0.000 446 0.434 2 0.001 2 0.000 5 0.434 0.001 0.435
linked 2790 C2790T|(ORF1ab_polyprotein:C2525T(T842I))|(ORF1a_polyprotein:C2525T(T842I)) 3669 0.995 7455 0.994 21 1.000 83 1.000 472 0.996 1788 0.996 274 0.996 591 0.998 1027 0.999 554 1.000 2642 0.995 185 1.000 79 1.000 1170 0.998 359 0.434 4640 0.992 4604 0.994 2256 0.994 2849 0.998 27426 0.996 12630 0.996 2964 0.995 117 1.000 23 3.426 18.94 22.366
linked 2886 T2886-2886del|(ORF1ab_polyprotein:2621-2621del(874fs))|(ORF1a_polyprotein:2621-2621del(874fs)) 2 0.000 1276 0.307 2 0.307 0.0 0.307
linked 2888 G2888C|(ORF1ab_polyprotein:G2623C(V875L))|(ORF1a_polyprotein:G2623C(V875L)) 4 0.000 1 0.000 1 0.001 4 0.000 3 0.001 1 0.000 1 0.000 6 0.000 3 0.001 1 0.001 3 0.001 3 0.000 2 0.001 2 0.000 3 0.000 1 0.000 2 0.000 1 0.000 1276 0.310 5 0.001 20 0.313 0.004 0.317
2968 T2968-2968del|(ORF1ab_polyprotein:2703-2703del(901fs))|(ORF1a_polyprotein:2703-2703del(901fs)) 1 0.001 1975 0.996 2 0.996 0.001 0.997
linked 3037 RATG13,Delta C3037T|(ORF1ab_polyprotein:C2772T(F924F))|(ORF1a_polyprotein:C2772T(F924F)) 4936 0.995 1290 0.994 1980 0.998 9120 0.997 5921 0.998 7087 0.995 5721 0.995 12285 0.994 4611 0.995 866 0.998 2230 0.994 2550 0.995 7582 0.994 6266 0.996 2176 0.995 5896 0.996 3699 0.996 1877 0.998 3789 0.995 5105 0.996 1569 0.991 607 0.992 1499 0.990 4255 0.994 24 4.977 18.904 23.881
3236 C3236T|(ORF1ab_polyprotein:C2971T(Q991*))|(ORF1a_polyprotein:C2971T(Q991*)) 5 0.625 1 0.625 0 0.625
3250 G3250T|(ORF1ab_polyprotein:G2985T(E995D))|(ORF1a_polyprotein:G2985T(E995D)) 2 0.000 43 1.000 2 1.0 0.0 1.0
3267 RATG13 C3267T|(ORF1ab_polyprotein:C3002T(T1001I))|(ORF1a_polyprotein:C3002T(T1001I)) 153 1.000 43 1.000 26 0.867 3 2.867 0 2.867
3279 T3279C|(ORF1ab_polyprotein:T3014C(I1005T))|(ORF1a_polyprotein:T3014C(I1005T)) 153 1.000 1 1.0 0 1.0
3342 A3342G|(ORF1ab_polyprotein:A3077G(N1026S))|(ORF1a_polyprotein:A3077G(N1026S)) 160 1.000 43 1.000 26 0.867 3 2.867 0 2.867
linked 3431 G3431T|(ORF1ab_polyprotein:G3166T(V1056L))|(ORF1a_polyprotein:G3166T(V1056L)) 41 1.000 58 1.000 2 0.038 10 1.000 52 1.000 139 1.000 6 1.000 20 0.087 4 0.133 10 1.000 5 1.000 52 0.495 64 0.970 95 1.000 5 1.000 45 1.000 20 1.000 120 0.984 21 1.000 12 1.000 60 1.000 11 1.000 49 0.980 23 3.133 16.554 19.686999999999998
3483 G3483A|(ORF1ab_polyprotein:G3218A(G1073E))|(ORF1a_polyprotein:G3218A(G1073E)) 26 0.867 1 0.867 0 0.867
linked 3565 T3565C|(ORF1ab_polyprotein:T3300C(G1100G))|(ORF1a_polyprotein:T3300C(G1100G)) 7184 0.998 7359 0.997 16881 0.654 39529 0.853 12554 0.999 5184 0.505 27713 0.902 15944 0.753 3946 0.999 6754 0.999 16652 0.999 16510 0.999 11120 0.999 2876 0.998 3073 0.999 6826 0.867 7995 0.999 956 0.999 1347 0.999 4907 0.997 15453 0.998 21 1.996 17.516000000000002 19.512
3621 G3621A|(ORF1ab_polyprotein:G3356A(G1119D))|(ORF1a_polyprotein:G3356A(G1119D)) 3 0.000 6 0.000 4 0.000 2 0.000 3 0.000 1 0.000 3 0.000 1 0.000 1 0.000 1 0.001 2797 0.568 1 0.000 12 0.568 0.001 0.569
3830 A3830G|(ORF1ab_polyprotein:A3565G(S1189G))|(ORF1a_polyprotein:A3565G(S1189G)) 2 0.000 1 0.000 5612 0.999 3 0.000 6 0.000 2 0.000 3 0.000 8 0.000 2388 0.796 2 0.000 2 0.000 3 0.000 2 0.000 1 0.000 1 0.000 1 0.000 2 0.000 2 0.000 18 1.795 0.0 1.795
4099 C4099T|(ORF1ab_polyprotein:C3834T(F1278F))|(ORF1a_polyprotein:C3834T(F1278F)) 2 0.000 1 0.000 4847 0.751 3 0.751 0.0 0.751
4179 A4179G|(ORF1ab_polyprotein:A3914G(K1305R))|(ORF1a_polyprotein:A3914G(K1305R)) 3 0.000 6 0.001 2 0.000 7 0.000 14 0.000 5 0.000 1 0.000 1 0.000 5 0.000 3 0.000 4593 0.410 1 0.000 1 0.000 9 0.000 14 0.41 0.001 0.411
linked 4184 G4184A|(ORF1ab_polyprotein:G3919A(G1307S))|(ORF1a_polyprotein:G3919A(G1307S)) 29238 0.999 8887 0.998 52531 0.999 62647 0.999 112749 0.999 23207 0.998 9222 0.999 76618 0.998 29562 0.998 20145 0.999 18272 0.998 21261 0.998 28126 0.999 42837 0.998 6586 0.588 6534 0.999 5920 0.999 7736 0.999 16728 0.999 2843 0.998 788 1.000 3882 0.997 35224 0.998 23 3.583 18.973000000000003 22.556000000000004
4228 A4228G|(ORF1ab_polyprotein:A3963G(P1321P))|(ORF1a_polyprotein:A3963G(P1321P)) 5 0.000 7 0.000 5 0.000 8 0.000 1 0.000 1 0.000 5 0.000 2 0.000 1 0.000 2 0.000 1 0.000 4 0.000 11 0.000 4642 0.411 1 0.000 1 0.000 2 0.000 17 0.411 0.0 0.411
4232 G4232T|(ORF1ab_polyprotein:G3967T(D1323Y))|(ORF1a_polyprotein:G3967T(D1323Y)) 27 0.001 4 0.000 8 0.000 8 0.000 9 0.000 8 0.000 1 0.000 38 0.000 17 0.001 8505 0.406 2 0.000 2 0.000 6 0.000 11 0.000 2 0.000 1 0.000 2 0.000 3 0.000 6 0.000 2 0.000 22 0.001 21 0.406 0.003 0.40900000000000003
linked 4321 C4321T|(ORF1ab_polyprotein:C4056T(A1352A))|(ORF1a_polyprotein:C4056T(A1352A)) 29778 0.994 9068 0.993 52652 0.999 62706 0.998 112851 0.998 23490 0.998 9302 0.997 77326 0.996 27055 0.902 20852 0.996 18857 0.996 21924 0.997 28422 0.997 43338 0.998 6646 0.588 6802 0.997 6170 0.997 7885 0.997 17017 0.997 3050 0.986 853 0.986 4167 0.986 36602 0.996 23 3.569 18.82 22.389
linked 4454 G4454A|(ORF1ab_polyprotein:G4189A(A1397T))|(ORF1a_polyprotein:G4189A(A1397T)) 2 0.000 1 0.000 2 0.000 6 0.000 1 0.000 1 0.000 5 0.000 11507 0.170 1 0.000 3 0.000 1 0.000 3 0.000 2 0.000 4394 0.164 3 0.000 3 0.000 3 0.000 17 0.334 0.0 0.334
4535 T4535C|(ORF1ab_polyprotein:T4270C(F1424L))|(ORF1a_polyprotein:T4270C(F1424L)) 5 0.000 4 0.000 2 0.000 2 0.000 2 0.000 2 0.000 1 0.000 7 0.000 7 0.000 1 0.000 3 0.000 8288 0.497 5 0.000 1 0.000 2 0.000 1 0.000 5 0.000 17 0.497 0.0 0.497
4838 A4838G|(ORF1ab_polyprotein:A4573G(I1525V))|(ORF1a_polyprotein:A4573G(I1525V)) 2 0.000 5 0.000 7 0.000 8 0.000 4 0.000 6 0.000 7 0.000 1 0.000 1 0.000 1 0.000 2 0.000 4 0.000 46358 0.710 2 0.000 2 0.000 1 0.000 2 0.000 3 0.000 1 0.000 1 0.000 20 0.71 0.0 0.71
4900 C4900T|(ORF1ab_polyprotein:C4635T(H1545H))|(ORF1a_polyprotein:C4635T(H1545H)) 32638 0.308 12 0.000 6 0.000 3 0.000 2 0.000 3 0.000 1 0.000 5 0.000 65947 0.997 23351 0.681 1 0.000 3 0.000 12 1.986 0.0 1.986
4939 A4939C|(ORF1ab_polyprotein:A4674C(T1558T))|(ORF1a_polyprotein:A4674C(T1558T)) 1 0.000 1 0.000 11 0.000 7 0.000 12 0.000 12 0.000 10 0.000 4 0.000 1 0.000 3 0.000 5 0.000 3 0.000 3 0.000 23346 0.680 2 0.000 1 0.000 3 0.000 8 0.000 1 0.000 2 0.000 5 0.000 21 0.68 0.0 0.68
5218 T5218G|(ORF1ab_polyprotein:T4953G(N1651K))|(ORF1a_polyprotein:T4953G(N1651K)) 4471 0.561 4553 0.958 2 1.5190000000000001 0 1.5190000000000001
5236 A5236G|(ORF1ab_polyprotein:A4971G(K1657K))|(ORF1a_polyprotein:A4971G(K1657K)) 4471 0.561 1 0.000 4552 0.957 3 0.001 1 0.000 3 0.000 1 0.000 7 1.518 0.001 1.519
5284 C5284T|(ORF1ab_polyprotein:C5019T(N1673N))|(ORF1a_polyprotein:C5019T(N1673N)) 4472 0.561 4556 0.958 2 1.5190000000000001 0 1.5190000000000001
5388 C5388A|(ORF1ab_polyprotein:C5123A(A1708D))|(ORF1a_polyprotein:C5123A(A1708D)) 1 0.000 4427 0.098 4 0.000 2 0.000 2 0.000 2 0.000 4 0.000 1 0.000 4509 0.958 1 0.000 1 0.000 1 0.000 21457 0.921 5045 0.352 1 0.000 1 0.000 2 0.000 1 0.000 1 0.000 1 0.000 20 2.3289999999999997 0.0 2.3289999999999997
5392 C5392A|(ORF1ab_polyprotein:C5127A(N1709K))|(ORF1a_polyprotein:C5127A(N1709K)) 3 0.000 4424 0.098 14 0.000 5 0.000 3 0.000 6 0.000 9 0.000 9 0.000 4502 0.959 1 0.000 1 0.000 1 0.000 1 0.000 4 0.000 21350 0.916 4985 0.348 3 0.000 3 0.000 1 0.000 4 0.000 1 0.000 2 0.000 22 2.3209999999999997 0.0 2.3209999999999997
5446 T5446-5446del|(ORF1ab_polyprotein:5181-5181del(1727fs))|(ORF1a_polyprotein:5181-5181del(1727fs)) 5651 0.527 1 0.527 0 0.527
5497 C5497T|(ORF1ab_polyprotein:C5232T(C1744C))|(ORF1a_polyprotein:C5232T(C1744C)) 5 0.000 1 0.000 2 0.000 2 0.000 1 1.000 1 0.000 1 0.000 2 0.000 12445 0.572 5102 0.472 1 0.000 11 2.044 0.0 2.044
5582 A5582T|(ORF1ab_polyprotein:A5317T(T1773S))|(ORF1a_polyprotein:A5317T(T1773S)) 1 0.000 2 0.001 3 0.000 4 0.000 6 0.000 1 0.000 1 1.000 3 0.000 1 0.000 1 0.000 1 0.000 6 0.000 12400 0.570 5105 0.472 2 0.000 1 0.000 3 0.000 4 0.000 4 0.000 19 2.042 0.001 2.0429999999999997
5600 RATG13 T5600C|(ORF1ab_polyprotein:T5335C(F1779L))|(ORF1a_polyprotein:T5335C(F1779L)) 1 0.000 2 0.001 1 0.000 4 0.000 1 0.000 1 0.000 6 0.000 4 0.000 3 0.000 1 1.000 1 0.000 1 0.000 1 0.000 2 0.000 1 0.000 21702 0.998 5101 0.471 1 0.000 1 0.000 2 0.000 2 0.000 21 2.469 0.001 2.4699999999999998
5628 C5628T|(ORF1ab_polyprotein:C5363T(T1788M))|(ORF1a_polyprotein:C5363T(T1788M)) 1 0.000 6 0.000 3 0.000 1 0.000 2 0.000 1 0.000 1 0.000 1 0.000 6 0.000 9198 0.428 1 0.000 1 0.000 12 0.428 0.0 0.428
5648 RATG13 A5648C|(ORF1ab_polyprotein:A5383C(K1795Q))|(ORF1a_polyprotein:A5383C(K1795Q)) 1 0.000 1 0.000 1 0.000 2 0.000 1 0.000 1 1.000 1 0.000 21485 0.999 5057 0.471 1 0.000 1 0.000 11 2.4699999999999998 0.0 2.4699999999999998
5689 A5689T|(ORF1ab_polyprotein:A5424T(S1808S))|(ORF1a_polyprotein:A5424T(S1808S)) 2 0.000 8 0.000 5 0.000 1 0.000 1 0.000 5 0.000 3 0.000 1 0.000 1 0.000 1 0.000 1 0.000 3 0.000 12288 0.572 1 0.000 4 0.000 1 0.000 3 0.000 1 0.000 2 0.000 19 0.572 0.0 0.572
5749 T5749C|(ORF1ab_polyprotein:T5484C(T1828T))|(ORF1a_polyprotein:T5484C(T1828T)) 1 0.000 7693 0.998 1 0.000 3287 0.997 1 0.000 2 0.000 56 0.002 10 0.001 7 0.001 9 1.996 0.003 1.9989999999999999
5878 RATG13 C5878T|(ORF1ab_polyprotein:C5613T(N1871N))|(ORF1a_polyprotein:C5613T(N1871N)) 1 0.000 3326 0.999 4 0.000 2 0.000 4 0.999 0.0 0.999
5921 G5921A|(ORF1ab_polyprotein:G5656A(G1886S))|(ORF1a_polyprotein:G5656A(G1886S)) 2 0.000 1 0.000 7322 0.547 1 0.000 1 0.000 1 0.000 1 0.000 2 0.000 8 0.547 0.0 0.547
5986 C5986T|(ORF1ab_polyprotein:C5721T(F1907F))|(ORF1a_polyprotein:C5721T(F1907F)) 2 0.000 1 0.000 39460 0.345 2 0.000 1 0.000 3 0.000 3301 0.998 1 0.000 1 0.000 1 0.000 22637 0.755 1 0.000 3 0.000 1 0.000 1 0.000 1 0.000 16 2.098 0.0 2.098
linked 6012 C6012T|(ORF1ab_polyprotein:C5747T(P1916L))|(ORF1a_polyprotein:C5747T(P1916L)) 7 0.000 4 0.000 2 0.000 4 0.000 1 0.000 1 0.000 2 0.000 1 0.000 524 0.137 2 0.000 2 0.000 2 0.000 2 0.000 2 0.000 1 0.000 3 0.000 6 0.000 1 0.000 5 0.000 19 0.137 0.0 0.137
linked 6031 RATG13 C6031T|(ORF1ab_polyprotein:C5766T(N1922N))|(ORF1a_polyprotein:C5766T(N1922N)) 4 0.000 1 0.000 1 0.000 1 0.000 2 0.000 521 0.139 3 0.000 1 0.000 1 0.000 1 0.000 3 0.000 1 0.000 12 0.139 0.0 0.139
6042 ATAATTTTAAGTTTGTATGTGATA6042-6065del|(ORF1ab_polyprotein:GATAATTTTAAGTTTGTATGTGATAAT5776-5802GATdel(DNFKFVCDN1926-1934Ddel))|(ORF1a_polyprotein:GATAATTTTAAGTTTGTATGTGATAAT5776-5802GATdel(DNFKFVCDN1926-1934Ddel)) 524 0.998 1 0.998 0 0.998
6045 ATT6045-6047del|(ORF1ab_polyprotein:AATTTT5779-5784ATTdel(NF1927-1928Idel))|(ORF1a_polyprotein:AATTTT5779-5784ATTdel(NF1927-1928Idel)) 23732 0.570 1 0.57 0 0.57
6113 CCTGCTTCAAGAGAGCT6113-6129del|(ORF1ab_polyprotein:CCTGCTTCAAGAGAGCTTAAAGTT5848-5871TTTdel(PASRELKV1950-1957Fdel))|(ORF1a_polyprotein:CCTGCTTCAAGAGAGCTTAAAGTT5848-5871TTTdel(PASRELKV1950-1957Fdel)) 521 0.994 1 0.994 0 0.994
6131 AAAG6131-6134del|(ORF1ab_polyprotein:CCTGCTTCAAGAGAGCTTAAAGTT5848-5871TTTdel(PASRELKV1950-1957Fdel))|(ORF1a_polyprotein:CCTGCTTCAAGAGAGCTTAAAGTT5848-5871TTTdel(PASRELKV1950-1957Fdel)) 521 0.994 1 0.994 0 0.994
linked 6183 A6183G|(ORF1ab_polyprotein:A5918G(K1973R))|(ORF1a_polyprotein:A5918G(K1973R)) 55119 0.996 15739 0.996 74869 0.700 108084 0.999 82892 0.999 19830 0.995 27817 0.996 91823 0.881 37693 0.999 40203 0.999 10311 0.998 9462 0.999 50857 0.999 50552 0.999 3 0.000 26284 0.999 3873 0.999 13922 0.999 34512 0.999 61291 0.999 43557 0.999 20280 0.999 38112 0.999 42825 0.999 24 3.697 18.849 22.546
6206 A6206G|(ORF1ab_polyprotein:A5941G(K1981E))|(ORF1a_polyprotein:A5941G(K1981E)) 6 0.000 2 0.000 7 0.000 9 0.000 3 0.000 2 0.000 2 0.000 9 0.000 1 0.000 523 0.961 4 0.000 2 0.000 2 0.000 8 0.000 2 0.000 4 0.000 3 0.000 1 0.000 4 0.000 2 0.000 1 0.000 1 0.000 6 0.000 23 0.961 0.0 0.961
6226 TAAACCTAT6226-6234del|(ORF1ab_polyprotein:CATAAACCTATT5959-5970CATdel(HKPI1987-1990Hdel))|(ORF1a_polyprotein:CATAAACCTATT5959-5970CATdel(HKPI1987-1990Hdel)) 496 0.948 1 0.948 0 0.948
6368 G6368A|(ORF1ab_polyprotein:G6103A(G2035R))|(ORF1a_polyprotein:G6103A(G2035R)) 1 0.000 3 0.000 3 0.000 42292 0.614 3 0.000 1 0.000 1 0.000 2 0.000 8 0.614 0.0 0.614
6483 G6483T|(ORF1ab_polyprotein:G6218T(G2073V))|(ORF1a_polyprotein:G6218T(G2073V)) 3 0.000 9 0.000 1 0.000 2 0.000 2 0.000 1 0.000 1 0.000 4 0.000 3 0.000 1 0.000 4 0.000 4 0.000 1 0.000 3 0.000 3 0.000 6 0.000 5 0.000 1 0.000 17286 0.534 19 0.534 0.0 0.534
6525 C6525T|(ORF1ab_polyprotein:C6260T(T2087I))|(ORF1a_polyprotein:C6260T(T2087I)) 1 0.000 1 0.000 2 0.000 4 0.000 2 0.000 42014 0.615 2 0.000 1 0.000 4 0.000 2 0.000 1 0.000 1 0.000 1 0.000 1 0.000 3 0.000 1 0.000 1 0.000 17 0.615 0.0 0.615
6615 T6615C|(ORF1ab_polyprotein:T6350C(L2117S))|(ORF1a_polyprotein:T6350C(L2117S)) 1 0.000 2 0.000 3 1.000 1 0.000 4 1.0 0.0 1.0
6695 C6695T|(ORF1ab_polyprotein:C6430T(P2144S))|(ORF1a_polyprotein:C6430T(P2144S)) 1 0.000 2746 0.998 1 0.000 3 0.998 0.0 0.998
6884 G6884A|(ORF1ab_polyprotein:G6619A(G2207S))|(ORF1a_polyprotein:G6619A(G2207S)) 36 0.000 53 0.000 1 0.000 21 0.000 1 0.000 4 0.000 2 0.000 11 0.000 2 0.000 85684 0.999 8 0.000 5 0.000 4 0.000 1 0.000 4 0.000 1 0.000 1 0.000 2 0.000 2 0.000 4 0.000 20 0.999 0.0 0.999
6894 G6894T|(ORF1ab_polyprotein:G6629T(C2210F))|(ORF1a_polyprotein:G6629T(C2210F)) 16 0.000 29 0.000 1 0.500 26 0.000 12 0.000 8 0.000 3 0.000 15 0.000 7 0.000 122 0.001 27 0.000 23 0.000 8 0.000 7 0.000 4 0.000 7 0.000 5 0.000 2 0.000 7 0.000 3 0.000 10 0.000 8 0.000 29 0.000 9 0.000 24 0.501 0.0 0.501
6896 C6896G|(ORF1ab_polyprotein:C6631G(L2211V))|(ORF1a_polyprotein:C6631G(L2211V)) 12 0.000 6 0.000 9 0.000 4 0.000 1 0.000 4 0.000 44712 0.521 6 0.000 5 0.000 4 0.000 3 0.000 1 0.000 2 0.000 1 0.000 2 0.000 1 0.000 4 0.000 4 0.000 7 0.000 3 0.000 20 0.521 0.0 0.521
6912 A6912C|(ORF1ab_polyprotein:A6647C(N2216T))|(ORF1a_polyprotein:A6647C(N2216T)) 105 0.001 143 0.001 1 0.500 62 0.001 19 0.000 33 0.001 14 0.001 29 0.001 33 0.001 85619 0.998 48 0.001 44 0.001 21 0.001 35 0.001 7 0.000 22 0.001 25 0.001 8 0.001 8 0.000 11 0.000 15 0.001 19 0.001 20 0.001 32 0.000 41 0.001 25 1.501 0.015000000000000006 1.5159999999999998
6954 T6954C|(ORF1ab_polyprotein:T6689C(I2230T))|(ORF1a_polyprotein:T6689C(I2230T)) 1 0.000 4 0.000 1 1.000 2 0.000 4 0.000 85697 0.999 6 0.000 3 0.000 2 0.000 4 0.000 1 0.000 2 0.000 1 0.000 2 0.000 14 1.999 0.0 1.999
6987 G6987T|(ORF1ab_polyprotein:G6722T(G2241V))|(ORF1a_polyprotein:G6722T(G2241V)) 81 0.001 142 0.001 8 0.000 5 0.000 9 0.000 10 0.001 17 0.001 28 0.001 41096 0.475 31 0.000 19 0.000 10 0.000 17 0.001 5 0.000 22 0.001 10 0.000 7 0.001 10 0.001 7 0.000 16 0.001 12 0.000 9 0.000 34 0.000 25 0.001 24 0.476 0.010000000000000002 0.486
7040 A7040T|(ORF1ab_polyprotein:A6775T(M2259L))|(ORF1a_polyprotein:A6775T(M2259L)) 39 0.001 35 0.000 1 1.000 8 0.000 7 0.000 12 0.000 4 0.000 8 0.000 12 0.000 86269 0.998 24 0.000 14 0.000 5 0.000 13 0.000 4 0.000 3 0.000 4 0.000 2 0.000 18 0.001 32 0.001 9 0.000 8 0.000 29 0.000 14 0.000 24 1.998 0.003 2.001
7236 T7236C|(ORF1ab_polyprotein:T6971C(V2324A))|(ORF1a_polyprotein:T6971C(V2324A)) 2 0.000 2 0.000 1 0.000 9 1.000 4 1.0 0.0 1.0
7310 T7310G|(ORF1ab_polyprotein:T7045G(L2349V))|(ORF1a_polyprotein:T7045G(L2349V)) 2 0.001 1 0.000 1 0.000 1 0.001 13 1.000 5 1.0 0.002 1.002
7328 G7328T|(ORF1ab_polyprotein:G7063T(A2355S))|(ORF1a_polyprotein:G7063T(A2355S)) 2 0.001 1 0.000 4 0.001 13 1.000 1 0.001 1 0.001 1 0.002 1 0.001 1 0.002 1 0.003 1 0.001 11 1.001 0.012000000000000004 1.013
7389 C7389G|(ORF1ab_polyprotein:C7124G(A2375G))|(ORF1a_polyprotein:C7124G(A2375G)) 2 0.001 1 0.000 2 0.000 3 0.002 1245 0.998 1 0.003 2 0.001 7 0.998 0.007 1.005
7570 T7570C|(ORF1ab_polyprotein:T7305C(Y2435Y))|(ORF1a_polyprotein:T7305C(Y2435Y)) 1 0.001 24 1.000 1 0.003 2 0.000 4 1.0 0.004 1.004
7936 G7936C|(ORF1ab_polyprotein:G7671C(A2557A))|(ORF1a_polyprotein:G7671C(A2557A)) 20 0.001 24 0.001 7629 0.571 4 0.000 6 0.000 10 0.000 16 0.000 24 0.000 18 0.001 2 0.000 7 0.000 7 0.000 6 0.000 6 0.000 6 0.000 1 0.000 4 0.000 9 0.001 12 0.000 14 0.000 2 0.000 1 0.000 4 0.000 18 0.001 24 0.571 0.005 0.576
8636 A8636T|(ORF1ab_polyprotein:ACA8371-8373TTA(T2791L))|(ORF1a_polyprotein:ACA8371-8373TTA(T2791L)) 5665 0.999 1 0.999 0 0.999
8637 C8637T|(ORF1ab_polyprotein:ACA8371-8373TTA(T2791L))|(ORF1a_polyprotein:ACA8371-8373TTA(T2791L)) 5665 0.999 1 0.999 0 0.999
8737 T8737C|(ORF1ab_polyprotein:T8472C(D2824D))|(ORF1a_polyprotein:T8472C(D2824D)) 1 0.000 5653 1.000 2 0.000 1 0.001 1 0.000 1 0.000 6 1.0 0.001 1.001
8879 A8879T|(ORF1ab_polyprotein:A8614T(T2872S))|(ORF1a_polyprotein:A8614T(T2872S)) 6 0.000 7 0.000 2 0.000 1 0.000 1 0.000 3 0.000 6159 0.998 1 0.000 3 0.000 2 0.000 2 0.000 3 0.000 3 0.000 2 0.000 4 0.000 4 0.000 16 0.998 0.0 0.998
9024 C9024-9024del|(ORF1ab_polyprotein:8759-8759del(2920fs))|(ORF1a_polyprotein:8759-8759del(2920fs)) 1 0.000 7872 0.675 2 0.675 0 0.675
9092 G9092A|(ORF1ab_polyprotein:G8827A(V2943I))|(ORF1a_polyprotein:G8827A(V2943I)) 4 0.000 2 0.000 6119 0.999 3568 0.151 1 0.000 1550 0.084 1 0.000 7 1.234 0.0 1.234
9419 A9419G|(ORF1ab_polyprotein:A9154G(I3052V))|(ORF1a_polyprotein:A9154G(I3052V)) 1 0.000 2 0.000 1 0.000 2 0.000 3 0.000 12586 0.999 2 0.000 1 0.000 1 0.000 1 0.000 3 0.000 11 0.999 0.0 0.999
9578 T9578C|(ORF1ab_polyprotein:T9313C(Y3105H))|(ORF1a_polyprotein:T9313C(Y3105H)) 1 0.000 1 0.000 12568 0.997 3 0.000 2 0.000 4 0.000 1 0.000 25 0.004 20 0.002 79 0.002 10 0.999 0.006 1.005
9646 G9646A|(ORF1ab_polyprotein:G9381A(Q3127Q))|(ORF1a_polyprotein:G9381A(Q3127Q)) 3 0.000 2 0.000 1 0.000 2 0.000 2 0.000 12529 0.999 1 0.000 2 0.000 2 0.000 4 0.000 2 0.000 11 0.999 0.0 0.999
10295 T10295G|(ORF1ab_polyprotein:T10030G(S3344A))|(ORF1a_polyprotein:T10030G(S3344A)) 1 0.000 1 0.000 3 0.000 3 0.000 1 0.000 1 0.000 96 0.003 80 0.004 16 0.004 3754 0.387 23 0.001 11 0.391 0.008 0.399
10330 T10330C|(ORF1ab_polyprotein:T10065C(D3355D))|(ORF1a_polyprotein:T10065C(D3355D)) 1 0.000 3 0.000 2 0.000 2 0.000 4 0.000 2 0.000 1 0.000 1 0.000 2 0.000 1 0.000 4493 1.000 2 0.000 12 1.0 0.0 1.0
linked 10447 RATG13 G10447A|(ORF1ab_polyprotein:G10182A(R3394R))|(ORF1a_polyprotein:G10182A(R3394R)) 15766 0.997 16227 0.997 43594 0.997 12368 0.997 22993 0.999 39989 0.999 38400 0.998 19134 0.998 26362 0.998 10212 0.998 11001 0.998 34323 0.997 22717 0.996 4518 0.996 5973 0.611 14983 0.997 9325 0.998 13822 0.996 6422 0.996 4418 0.980 1603 0.973 4171 0.980 35635 0.994 23 3.585 18.905 22.490000000000002
linked 10449 C10449A|(ORF1ab_polyprotein:C10184A(P3395H))|(ORF1a_polyprotein:C10184A(P3395H)) 15757 0.996 16221 0.997 43691 0.999 12394 0.999 22983 0.998 39962 0.998 38385 0.998 19130 0.998 26364 0.998 10210 0.997 11000 0.998 34397 0.999 22763 0.998 4531 0.999 5975 0.612 14805 0.985 9174 0.981 13862 0.999 6442 0.999 4499 0.998 1476 0.896 4247 0.998 35793 0.998 23 3.607 18.831 22.438
11250 G11250A|(ORF1ab_polyprotein:G10985A(R3662H))|(ORF1a_polyprotein:G10985A(R3662H)) 4 0.000 1 0.000 1 0.000 2271 0.998 2 0.000 2 0.000 2 0.000 1 0.000 8 0.998 0.0 0.998
linkedubiq 11288 TCTGGTTTT11288-11296del|(ORF1ab_polyprotein:11023-11031del(SGF3675-3677del))|(ORF1a_polyprotein:11023-11031del(SGF3675-3677del)) 19407 0.997 8689 0.997 20271 0.999 6759 1.000 23847 0.999 11467 0.999 16399 0.998 13832 0.998 5692 0.999 21199 0.998 18158 0.999 8656 0.999 16333 0.998 7688 0.998 2332 0.999 3590 0.998 7038 0.999 8184 0.998 8156 0.999 2546 0.999 6522 0.998 5514 0.999 18607 0.998 4850 0.999 24 5.991 17.973 23.964
11460 C11460A|(ORF1ab_polyprotein:C11195A(S3732Y))|(ORF1a_polyprotein:C11195A(S3732Y)) 1 0.000 16061 0.793 1 0.000 5654 0.999 1 0.000 1 0.000 6 1.792 0.0 1.792
11535 GTATT11535-11539del|(ORF1ab_polyprotein:11270-11274del(3757fs))|(ORF1a_polyprotein:11270-11274del(3757fs)) 1 1.000 1 1.0 0 1.0
11548 G11548A|(ORF1ab_polyprotein:G11283A(M3761I))|(ORF1a_polyprotein:G11283A(M3761I)) 1 0.000 1 1.000 2 1.0 0.0 1.0
11835 C11835A|(ORF1ab_polyprotein:C11570A(T3857N))|(ORF1a_polyprotein:C11570A(T3857N)) 11 0.000 7 0.000 4353 0.998 3 0.000 3 0.000 3 0.000 1 0.000 2 0.000 6 0.000 4 0.000 4 0.001 2 0.000 2 0.000 6 0.000 4 0.000 9 0.000 13 0.000 6 0.000 5 0.000 19 0.999 0.0 0.999
11920 T11920C|(ORF1ab_polyprotein:T11655C(S3885S))|(ORF1a_polyprotein:T11655C(S3885S)) 3 0.000 4 0.000 4380 0.999 1 0.000 6 0.000 2 0.000 1 0.000 2 0.000 1 0.000 1 0.000 4 0.000 1 0.000 12 0.999 0.0 0.999
12049 C12049T|(ORF1ab_polyprotein:C11784T(N3928N))|(ORF1a_polyprotein:C11784T(N3928N)) 1 0.000 4390 1.000 1 0.000 2 0.000 1 0.000 1 0.000 3 0.000 2 0.000 1 0.000 1 0.000 2 0.000 4 0.000 2 0.000 13 1.0 0.0 1.0
12139 T12139C|(ORF1ab_polyprotein:T11874C(A3958A))|(ORF1a_polyprotein:T11874C(A3958A)) 4 0.000 3 0.000 4355 0.997 2 0.000 4 0.000 1 0.000 3 0.000 4 0.000 3 0.000 1 0.000 1 0.000 2 0.000 2 0.000 1 0.000 1 0.000 9 0.000 9 0.000 17 0.997 0.0 0.997
12162 A12162G|(ORF1ab_polyprotein:A11897G(Q3966R))|(ORF1a_polyprotein:A11897G(Q3966R)) 1858 0.508 1 0.000 1 0.000 1 0.000 1 0.000 1 0.000 1 0.000 1 0.000 1 0.000 2 0.000 1 0.000 1 0.000 2 0.000 2 0.000 14 0.508 0.0 0.508
12164 G12164T|(ORF1ab_polyprotein:G11899T(A3967S))|(ORF1a_polyprotein:G11899T(A3967S)) 1 0.000 1859 0.508 2 0.000 2 0.000 1 0.000 1 0.000 1 0.000 1 0.000 1 0.000 9 0.508 0.0 0.508
12181 RATG13 T12181C|(ORF1ab_polyprotein:T11916C(D3972D))|(ORF1a_polyprotein:T11916C(D3972D)) 1 0.000 1861 0.508 2 0.000 2 0.000 1 0.000 1 0.000 2 0.000 1 0.000 1 0.000 2 0.000 1 0.000 2 0.000 1 0.000 1 0.000 14 0.508 0.0 0.508
12721 G12721T|(ORF1ab_polyprotein:G12456T(M4152I))|(ORF1a_polyprotein:G12456T(M4152I)) 195 1.000 1 0.002 2 1.0 0.002 1.002
13458 C13458A|(ORF1ab_polyprotein:C13193A(S4398*))|(ORF1a_polyprotein:C13193A(S4398*)) 7 0.000 8 0.000 7 0.000 6 0.000 7 0.000 4 0.000 8 0.000 11 0.000 1 0.500 3 0.000 5 0.000 6 0.000 4 0.000 10 0.000 17 0.000 3 0.000 7 0.000 3 0.000 4 0.000 7 0.000 2 0.000 3 0.000 3 0.000 11 0.000 24 0.5 0.0 0.5
13470 G13470T|(ORF1ab_polyprotein:G13206T(R4402R))|(ORF1a_polyprotein:G13205T(G4402V)) 3 0.000 4 0.000 2 0.000 3 0.000 1 0.000 1 0.000 3 0.000 1 0.500 2 0.000 3 0.000 2 0.000 2 0.000 5 0.000 2 0.000 2 0.000 3 0.000 6 0.000 3 0.000 1 0.000 1 0.000 3 0.000 21 0.5 0.0 0.5
13475 G13475T|(ORF1ab_polyprotein:TGC13210-13212TTG(C4404L))|(ORF1a_polyprotein:GCG13210-13212TGG(A4404W)) 1 0.000 1 0.500 2 0.5 0.0 0.5
13476 C13476G|(ORF1ab_polyprotein:TGC13210-13212TTG(C4404L))|(ORF1a_polyprotein:GCG13210-13212TGG(A4404W)) 1 0.000 1 0.500 2 0.5 0.0 0.5
13478 G13478T|(ORF1ab_polyprotein:G13214T(G4405V))|(ORF1a_polyprotein:G13213T(V4405L)) 2 0.000 2 0.000 1 0.000 4 0.000 3 0.000 4 0.000 3 0.000 4 0.000 1 0.500 4 0.000 2 0.000 3 0.000 8 0.000 1 0.000 1 0.000 1 0.000 1 0.000 2 0.000 1 0.000 1 0.000 3 0.000 21 0.5 0.0 0.5
13484 13484-insertTTG|(ORF1ab_polyprotein:AGT13219-13221ATTGGTinsert(S4407IG)) 1 1.000 1 1.0 0 1.0
13486 G13486T|(ORF1ab_polyprotein:GCA13222-13224TGA(A4408*)) 1 0.000 3 0.000 1 0.000 1 1.000 1 0.000 5 1.0 0.0 1.0
13487 C13487G|(ORF1ab_polyprotein:GCA13222-13224TGA(A4408*)) 1 0.000 3 0.000 1 0.000 1 1.000 1 0.000 5 1.0 0.0 1.0
13490 CCC13490-13492del|(ORF1ab_polyprotein:GCCCGT13225-13230GTTdel(AR4409-4410Vdel)) 1 1.000 1 1.0 0 1.0
13493 G13493T|(ORF1ab_polyprotein:GCCCGT13225-13230GTTdel(AR4409-4410Vdel)) 1 1.000 1 1.0 0 1.0
13495 C13495G|(ORF1ab_polyprotein:C13231G(L4411V)) 1 0.000 1 0.000 4 0.000 3 0.000 1 1.000 162 0.003 190 0.003 384 0.003 1 0.000 1 0.000 1 0.000 1 0.000 18 0.001 13 1.003 0.007 1.0099999999999998
13499 C13499A|(ORF1ab_polyprotein:C13235A(T4412K)) 22 0.000 8 0.000 15 0.000 21 0.000 14 0.000 16 0.000 18 0.000 19 0.000 1 1.000 3 0.000 5 0.000 3 0.000 13 0.000 18 0.000 14 0.000 3 0.000 2 0.000 4 0.000 8 0.000 11 0.000 6 0.000 2 0.000 12 0.000 8 0.000 24 1.0 0.0 1.0
13501 C13501A|(ORF1ab_polyprotein:C13237A(P4413T)) 8 0.000 7 0.000 6 0.000 11 0.000 8 0.000 1 0.000 9 0.000 9 0.000 1 1.000 1 0.000 3 0.000 5 0.000 8 0.000 8 0.000 2 0.000 2 0.000 1 0.000 3 0.000 12 0.000 5 0.000 2 0.000 6 0.000 2 0.000 23 1.0 0.0 1.0
13511 C13511G|(ORF1ab_polyprotein:C13247G(T4416R)) 67 0.001 83 0.002 63 0.001 53 0.001 40 0.001 69 0.001 81 0.001 64 0.001 1 1.000 8 0.000 14 0.000 20 0.001 83 0.002 53 0.001 94 0.001 22 0.001 48 0.001 52 0.001 25 0.001 68 0.001 25 0.001 26 0.001 27 0.001 49 0.002 24 1.0039999999999998 0.02000000000000001 1.0239999999999998
13533 RATG13 A13533G|(ORF1ab_polyprotein:A13269G(V4423V)) 2 0.000 2 0.000 30093 0.447 2 0.000 2 0.000 3 0.000 5 0.000 17001 0.999 1 0.000 4 0.000 2 0.000 9 0.000 2 0.000 1 0.000 6 0.000 1 0.000 1 0.000 3 0.000 18 1.446 0.0 1.446
13543 T13543A|(ORF1ab_polyprotein:T13279A(F4427I)) 7 0.000 6 0.000 2 0.000 2 0.000 12 0.000 2 0.000 1 1.000 2 0.000 2 0.000 2 0.000 7 0.000 6 0.000 7 0.000 1 0.000 4 0.000 2 0.000 4 0.000 7 0.000 4 0.000 2 0.000 3 0.000 21 1.0 0.0 1.0
13563 A13563C|(ORF1ab_polyprotein:A13299C(K4433N)) 40 0.001 56 0.001 7 0.000 6 0.000 3 0.000 12 0.000 21 0.000 14 0.000 1 1.000 2 0.000 10 0.000 5 0.000 19 0.000 19 0.000 30 0.000 2 0.000 16 0.000 12 0.000 9 0.000 34 0.000 1 0.000 9 0.000 8 0.000 12 0.000 24 1.0 0.002 1.002
13567 G13567C|(ORF1ab_polyprotein:G13303C(A4435P)) 48 0.001 46 0.001 4 0.000 3 0.000 13 0.000 40 0.001 23 0.000 1 1.000 2 0.000 13 0.000 7 0.000 10 0.000 16 0.000 29 0.000 1 0.000 12 0.000 18 0.000 9 0.000 16 0.000 5 0.000 9 0.000 14 0.000 12 0.000 23 1.0 0.003 1.003
13576 G13576T|(ORF1ab_polyprotein:G13312T(A4438S)) 45 0.001 31 0.001 4 0.000 7 0.000 5 0.000 20 0.000 34 0.001 28 0.001 1 1.000 10 0.001 7 0.000 4 0.000 21 0.000 25 0.000 36 0.000 5 0.000 10 0.000 12 0.000 22 0.000 23 0.000 6 0.000 4 0.000 5 0.000 16 0.001 24 1.001 0.005 1.0059999999999998
13587 A13587T|(ORF1ab_polyprotein:A13323T(L4441L)) 13 0.000 21 0.000 3 0.000 1 0.000 2 0.000 8 0.000 13 0.000 10 0.000 1 1.000 8 0.000 8 0.000 4 0.000 5 0.000 4 0.000 10 0.000 2 0.000 5 0.000 6 0.000 2 0.000 16 0.000 3 0.000 5 0.000 12 0.000 3 0.000 24 1.0 0.0 1.0
13601 G13601T|(ORF1ab_polyprotein:G13337T(C4446F)) 69 0.001 53 0.001 5 0.000 13 0.000 14 0.000 19 0.000 42 0.001 26 0.000 1 1.000 8 0.000 10 0.000 3 0.000 17 0.000 21 0.000 45 0.000 4 0.000 11 0.000 4 0.000 10 0.000 22 0.000 3 0.000 8 0.000 7 0.000 10 0.000 24 1.0 0.003 1.003
13603 C13603A|(ORF1ab_polyprotein:CGC13339-13341ATC(R4447I)) 2 0.000 2 0.000 1 0.000 2 0.000 1 1.000 1 0.000 2 0.000 1 0.000 1 0.000 1 0.000 1 0.000 11 1.0 0.0 1.0
13604 G13604T|(ORF1ab_polyprotein:CGC13339-13341ATC(R4447I)) 2 0.000 2 0.000 1 0.000 2 0.000 1 1.000 1 0.000 2 0.000 1 0.000 1 0.000 1 0.000 1 0.000 11 1.0 0.0 1.0
13607 T13607A|(ORF1ab_polyprotein:TTC13342-13344TAA(F4448*)) 1 0.000 1 0.000 1 0.000 1 1.000 1 0.000 5 1.0 0.0 1.0
13608 C13608A|(ORF1ab_polyprotein:TTC13342-13344TAA(F4448*)) 1 0.000 1 0.000 1 0.000 1 1.000 1 0.000 5 1.0 0.0 1.0
13609 C13609A|(ORF1ab_polyprotein:C13345A(Q4449K)) 30 0.001 27 0.000 6 0.000 3 0.000 8 0.000 8 0.000 13 0.000 12 0.000 1 1.000 6 0.000 5 0.000 2 0.000 10 0.000 16 0.000 33 0.000 2 0.000 16 0.000 2 0.000 12 0.000 17 0.000 5 0.000 1 0.000 1 0.000 15 0.001 24 1.0 0.002 1.002
13617 G13617T|(ORF1ab_polyprotein:G13353T(K4451N)) 27 0.000 29 0.001 5 0.000 3 0.000 3 0.000 7 0.000 11 0.000 19 0.000 1 1.000 7 0.000 7 0.000 4 0.000 17 0.000 17 0.000 15 0.000 7 0.000 8 0.000 5 0.000 9 0.000 21 0.000 7 0.000 6 0.000 4 0.000 17 0.001 24 1.0 0.002 1.002
13618 G13618C|(ORF1ab_polyprotein:G13354C(D4452H)) 45 0.001 54 0.001 7 0.000 10 0.000 4 0.000 29 0.000 37 0.001 24 0.000 1 1.000 11 0.001 25 0.001 18 0.001 24 0.000 30 0.000 49 0.000 6 0.000 22 0.001 14 0.000 17 0.000 43 0.000 20 0.001 26 0.001 31 0.001 15 0.001 24 1.002 0.009000000000000001 1.011
13621 G13621A|(ORF1ab_polyprotein:G13357A(E4453K)) 6 0.000 4 0.000 2 0.000 1 0.000 3 0.000 2 0.000 1 1.000 4 0.000 1 0.000 1 0.000 1 0.000 2 0.000 2 0.000 7 0.000 9 0.000 15 1.0 0.0 1.0
13624 G13624C|(ORF1ab_polyprotein:GAT13360-13362CAA(D4454Q)) 2 0.000 2 0.000 6 0.000 3 0.000 2 0.000 3 0.000 3 0.000 1 1.000 2 0.000 5 0.000 2 0.000 2 0.000 4 0.000 9 0.000 1 0.000 2 0.000 3 0.000 1 0.000 3 0.000 3 0.000 2 0.000 21 1.0 0.0 1.0
13626 T13626A|(ORF1ab_polyprotein:GAT13360-13362CAA(D4454Q)) 2 0.000 2 0.000 6 0.000 3 0.000 2 0.000 3 0.000 3 0.000 1 1.000 2 0.000 5 0.000 2 0.000 2 0.000 4 0.000 9 0.000 1 0.000 2 0.000 3 0.000 1 0.000 3 0.000 3 0.000 2 0.000 21 1.0 0.0 1.0
13627 G13627T|(ORF1ab_polyprotein:G13363T(D4455Y)) 27 0.000 20 0.000 3 0.000 1 0.000 2 0.000 6 0.000 15 0.000 15 0.000 1 1.000 2 0.000 4 0.000 5 0.000 11 0.000 10 0.000 11 0.000 1 0.000 5 0.000 7 0.000 4 0.000 11 0.000 2 0.000 1 0.000 3 0.000 6 0.000 24 1.0 0.0 1.0
13632 T13632A|(ORF1ab_polyprotein:T13368A(N4456K)) 15 0.000 21 0.000 4 0.000 10 0.000 4 0.000 13 0.000 23 0.000 17 0.000 1 1.000 3 0.000 6 0.000 8 0.000 46 0.001 16 0.000 21 0.000 1 0.000 5 0.000 6 0.000 9 0.000 22 0.000 6 0.000 4 0.000 10 0.000 10 0.000 24 1.0 0.001 1.001
13633 T13633A|(ORF1ab_polyprotein:TTA13369-13371AAA(L4457K)) 2 0.000 2 0.000 1 0.000 1 0.000 2 0.000 1 0.000 1 1.000 1 0.000 2 0.000 1 0.000 2 0.000 5 0.000 6 0.000 1 0.000 1 0.000 2 0.000 1 0.000 2 0.000 2 0.000 1 0.000 20 1.0 0.0 1.0
13634 T13634A|(ORF1ab_polyprotein:TTA13369-13371AAA(L4457K)) 2 0.000 2 0.000 1 0.000 1 0.000 2 0.000 1 0.000 1 1.000 1 0.000 2 0.000 1 0.000 2 0.000 5 0.000 6 0.000 1 0.000 1 0.000 2 0.000 1 0.000 2 0.000 2 0.000 1 0.000 20 1.0 0.0 1.0
13637 T13637A|(ORF1ab_polyprotein:T13373A(I4458N)) 16 0.000 12 0.000 2 0.000 6 0.000 2 0.000 5 0.000 24 0.000 16 0.000 1 1.000 1 0.000 7 0.000 2 0.000 6 0.000 12 0.000 13 0.000 3 0.000 1 0.000 3 0.000 8 0.000 19 0.000 5 0.000 5 0.000 11 0.000 4 0.000 24 1.0 0.0 1.0
13639 G13639C|(ORF1ab_polyprotein:G13375C(D4459H)) 37 0.001 36 0.001 4 0.000 4 0.000 5 0.000 20 0.000 48 0.001 27 0.001 1 1.000 9 0.001 14 0.000 8 0.000 24 0.000 25 0.000 38 0.000 6 0.000 19 0.000 13 0.000 20 0.000 27 0.000 11 0.000 11 0.000 13 0.000 17 0.001 24 1.001 0.005 1.0059999999999998
13654 G13654T|(ORF1ab_polyprotein:G13390T(V4464F)) 65 0.001 43 0.001 11 0.000 8 0.000 7 0.000 9 0.000 21 0.000 34 0.001 1 1.000 11 0.000 5 0.000 10 0.000 16 0.000 30 0.000 3 0.000 4 0.000 7 0.000 8 0.000 17 0.000 7 0.000 5 0.000 6 0.000 12 0.000 23 1.0 0.003 1.003
13659 G13659C|(ORF1ab_polyprotein:G13395C(K4465N)) 34 0.001 26 0.000 5 0.000 18 0.000 7 0.000 15 0.000 48 0.001 25 0.000 1 1.000 4 0.000 10 0.000 3 0.000 9 0.000 8 0.000 27 0.000 4 0.000 6 0.000 10 0.000 10 0.000 22 0.000 13 0.000 7 0.000 19 0.000 5 0.000 24 1.0 0.002 1.002
13661 G13661T|(ORF1ab_polyprotein:G13397T(R4466I)) 52 0.001 46 0.001 6 0.000 1 0.000 9 0.000 4 0.000 14 0.000 14 0.000 1 1.000 2 0.000 2 0.000 3 0.000 8 0.000 15 0.000 24 0.000 4 0.000 3 0.000 3 0.000 6 0.000 14 0.000 3 0.000 2 0.000 4 0.000 9 0.000 24 1.0 0.002 1.002
13663 C13663A|(ORF1ab_polyprotein:C13399A(H4467N)) 56 0.001 39 0.001 4 0.000 5 0.000 3 0.000 5 0.000 16 0.000 10 0.000 1 1.000 1 0.000 2 0.000 2 0.000 13 0.000 11 0.000 32 0.000 5 0.000 3 0.000 4 0.000 5 0.000 2 0.000 6 0.000 4 0.000 4 0.000 23 1.0 0.002 1.002
13667 C13667A|(ORF1ab_polyprotein:C13403A(T4468N)) 23 0.000 16 0.000 8 0.000 4 0.000 4 0.000 5 0.000 7 0.000 9 0.000 1 1.000 2 0.000 9 0.000 2 0.000 6 0.000 6 0.000 9 0.000 2 0.000 4 0.000 4 0.000 7 0.000 11 0.000 5 0.000 4 0.000 3 0.000 10 0.000 24 1.0 0.0 1.0
13675 A13675C|(ORF1ab_polyprotein:A13411C(N4471H)) 15 0.000 10 0.000 1 0.000 4 0.000 8 0.000 2 0.000 10 0.000 1 1.000 6 0.000 3 0.000 5 0.000 6 0.000 8 0.000 7 0.000 8 0.000 10 0.000 12 0.000 9 0.000 21 0.000 1 0.000 4 0.000 6 0.000 4 0.000 23 1.0 0.0 1.0
13948 G13948T|(ORF1ab_polyprotein:G13684T(D4562Y)) 6 0.001 24 0.001 1 0.000 4 0.000 16 0.001 12 0.000 8 0.000 7 0.000 8329 0.998 14 0.001 2 0.000 8 0.000 11 0.001 1 0.000 3 0.000 2 0.000 1 0.000 10 0.000 4 0.000 4 0.000 21 0.001 5 0.003 22 0.999 0.008 1.007
14018 G14018A|(ORF1ab_polyprotein:G13754A(C4585Y)) 1 0.000 3 0.000 1 0.000 5222 0.508 1 0.000 1 0.000 6 0.508 0.0 0.508
14148 T14148C|(ORF1ab_polyprotein:T13884C(S4628S)) 4 0.000 3 0.000 22569 0.580 1 0.000 2 0.000 2 0.000 9945 0.655 1 0.000 1 0.000 1 0.000 4 0.000 6 0.000 6 0.000 2 0.000 2 0.000 4 0.000 1 0.000 2 0.000 1 0.000 3 0.000 20 1.2349999999999999 0.0 1.2349999999999999
14153 A14153G|(ORF1ab_polyprotein:A13889G(Y4630C)) 4 0.000 1 0.000 25504 0.654 1 0.000 6 0.000 10700 0.705 3 0.000 7 0.000 1 0.000 86 0.003 34 0.001 163 0.003 1 0.000 1 0.000 5 0.000 5 0.000 1 0.000 1 0.000 20 0.001 19 1.362 0.005 1.367
14171 TAT14171-14173del|(ORF1ab_polyprotein:ATATTA13906-13911ATAdel(IL4636-4637Idel)) 25515 0.654 10706 0.705 2 1.359 0 1.359
14288 T14288C|(ORF1ab_polyprotein:T14024C(F4675S)) 3 0.000 7 0.000 4 0.000 3 0.000 1 0.000 7 0.000 11008 0.705 2 0.000 2 0.000 4 0.000 3 0.000 6 0.000 1 0.000 1 0.000 1 0.000 7 0.000 4 0.000 8 0.000 5 0.000 3 0.000 2 0.000 21 0.705 0.0 0.705
14322 C14322A|(ORF1ab_polyprotein:C14058A(Y4686*)) 34 0.001 16 0.001 25523 0.654 5 0.000 3 0.000 5 0.000 32 0.001 7 0.000 11017 0.705 5 0.000 13 0.000 9 0.001 17 0.001 9 0.000 17 0.000 7 0.000 7 0.000 9 0.000 13 0.000 12 0.000 10 0.000 8 0.000 6 0.000 11 0.001 24 1.359 0.006 1.365
14335 G14335A|(ORF1ab_polyprotein:G14071A(V4691I)) 1 0.000 1 0.000 25526 0.654 1 0.000 1 0.000 11038 0.703 3 0.000 2 0.000 1 0.000 1 0.000 2 0.000 11 1.357 0.0 1.357
14401 T14401C|(ORF1ab_polyprotein:T14137C(F4713L)) 4 0.000 1 0.000 25424 0.653 2 0.000 1 0.000 2 0.000 8 0.000 2 0.000 3 0.000 1 0.000 1 0.000 1 0.000 2 0.000 2 0.000 3 0.000 3 0.000 1 0.000 2 0.000 1 0.000 4 0.000 3 0.000 2 0.000 1 0.000 23 0.653 0.0 0.653
14408 CTACAAG14408-14414del|(ORF1ab_polyprotein:14144-14150del(4715fs)) 25284 0.652 10532 0.697 2 1.349 0 1.349
14422 C14422T|(ORF1ab_polyprotein:C14158T(P4720S)) 6 0.000 2 0.000 2 0.000 1 0.000 2 0.000 14712 0.763 2 0.000 2 0.000 5 0.000 1116 0.056 1 0.000 1 0.000 1 0.000 4 0.000 2 0.000 1 0.000 16 0.8190000000000001 0.0 0.8190000000000001
14576 CTATGCACGCTGCTTCTGGTAATCTATTA14576-14604del|(ORF1ab_polyprotein:14312-14340del(4771fs)) 4269 0.999 1142 0.290 2 1.289 0 1.289
14741 C14741A|(ORF1ab_polyprotein:C14477A(S4826Y)) 3 0.000 1 0.000 4 0.000 2 0.000 3 0.000 4 0.000 1 0.000 922 0.502 2 0.000 2 0.000 10 0.502 0.0 0.502
15225 T15225A|(ORF1ab_polyprotein:T14961A(Y4987*)) 8 0.001 8 0.000 1 0.000 3 0.000 5 0.000 4 0.800 4 0.000 1 0.000 4 0.000 7 0.000 1 0.000 3 0.000 5 0.000 1 0.000 2 0.000 2 0.000 5 0.000 4 0.001 1 0.000 19 0.801 0.001 0.802
15234 G15234A|(ORF1ab_polyprotein:G14970A(W4990*)) 2 0.000 2 0.000 2 0.000 6 1.000 1 0.000 2 0.000 2 0.000 1 0.000 1 0.000 9 1.0 0.0 1.0
15242 T15242C|(ORF1ab_polyprotein:T14978C(M4993T)) 1 0.000 1 0.000 1 0.000 6 1.000 1 0.000 3 0.000 1 0.000 1 0.000 2 0.000 1 0.000 5 0.000 11 1.0 0.0 1.0
15256 T15256C|(ORF1ab_polyprotein:T14992C(Y4998H)) 3 0.000 1 0.000 1 0.000 1 0.000 6 1.000 1 0.000 3 0.000 2 0.000 2 0.000 1 0.000 1 0.000 2 0.000 12 1.0 0.0 1.0
15278 A15278G|(ORF1ab_polyprotein:CAC15013-15015CGT(H5005R)) 5 0.833 1 0.000 2 0.833 0 0.833
15279 RATG13 C15279T|(ORF1ab_polyprotein:CAC15013-15015CGT(H5005R)) 5 0.833 1 0.000 2 0.833 0 0.833
15280 C15280A|(ORF1ab_polyprotein:C15016A(L5006I)) 3 0.000 6 0.000 1 0.000 1 0.000 1 0.000 5 0.000 5 0.001 6 1.000 2 0.000 2 0.000 3 0.000 5 0.000 7 0.001 2 0.000 4 0.000 3 0.000 1 0.000 1 0.000 3 0.000 19 1.001 0.001 1.0019999999999998
15308 15308-insertGTGTAAC|(ORF1ab_polyprotein:GATAGAGCCATG15043-15054GGTGTAACATTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGGGTACAGTGinsert(DRAM5015-5018GVTLKEPPHFHRGHAEYDRGYSinsert;fs)) 1 1.000 1 1.0 0 1.0
15310 15310-insertTGAA|(ORF1ab_polyprotein:GATAGAGCCATG15043-15054GGTGTAACATTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGGGTACAGTGinsert(DRAM5015-5018GVTLKEPPHFHRGHAEYDRGYSinsert;fs)) 1 1.000 1 1.0 0 1.0
15317 15317-insertCCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGGGTACAG|(ORF1ab_polyprotein:GATAGAGCCATG15043-15054GGTGTAACATTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGGGTACAGTGinsert(DRAM5015-5018GVTLKEPPHFHRGHAEYDRGYSinsert;fs)) 1 1.000 1 1.0 0 1.0
15319 CCT15319-15321del|(ORF1ab_polyprotein:15055-15057del(P5019del)) 1 1.000 1 1.0 0 1.0
15325 15325-insertA|(ORF1ab_polyprotein:15061insertA(5021fs)) 1 1.000 1 1.0 0 1.0
15330 15330-insertAGG|(ORF1ab_polyprotein:CTT15064-15066CTG(L5022L)) 1 1.000 1 1.0 0 1.0
15330 T15330G|(ORF1ab_polyprotein:CTT15064-15066CTG(L5022L)) 1 1.000 1 1.0 0 1.0
15334 15334-insertGCTGCCT|(ORF1ab_polyprotein:ATT15070-15072GCTGCCTATinsert(I5024AAYinsert)) 1 1.000 1 1.0 0 1.0
15335 T15335-15335del|(ORF1ab_polyprotein:ATT15070-15072GCTGCCTATinsert(I5024AAYinsert)) 1 1.000 1 1.0 0 1.0
15341 15341-insertAAGAGC|(ORF1ab_polyprotein:GCC15076-15078GAAGAGCCCinsert(A5026EEP)) 1 1.000 1 1.0 0 1.0
15344 C15344A|(ORF1ab_polyprotein:C15080A(S5027*)) 3 0.000 1 0.000 1 0.000 1 0.000 3 0.000 1 0.000 1 1.000 1 0.000 3 0.000 3 0.000 3 0.000 1 0.000 12 1.0 0.0 1.0
15346 C15346T|(ORF1ab_polyprotein:CTT15082-15084TGT(L5028C)) 1 1.000 1 1.0 0 1.0
15347 T15347G|(ORF1ab_polyprotein:CTT15082-15084TGT(L5028C)) 1 1.000 1 1.0 0 1.0
15350 15350-insertTAAAA|(ORF1ab_polyprotein:GTTCTT15085-15090GTAAAATTAACTTinsert(VL5029-5030VKLTinsert;fs)) 1 1.000 1 1.0 0 1.0
15352 15352-insertAA|(ORF1ab_polyprotein:GTTCTT15085-15090GTAAAATTAACTTinsert(VL5029-5030VKLTinsert;fs)) 1 0.500 1 0.5 0 0.5
15419 C15419T|(ORF1ab_polyprotein:C15155T(A5052V)) 1 0.000 1 0.000 3 0.000 1 0.000 112 0.982 1 0.000 1 0.000 3 0.000 1 0.000 9 0.982 0.0 0.982
15451 G15451A|(ORF1ab_polyprotein:G15187A(G5063S)) 1 0.000 1298 0.998 1 0.000 1 0.000 1 0.000 1496 0.067 114 1.000 5 0.000 1 0.000 2 0.000 2 0.000 1 0.000 12 1.998 0.067 2.065
15463 G15463A|(ORF1ab_polyprotein:G15199A(V5067I)) 1 0.000 1 0.000 1 0.000 113 0.991 1 0.000 1 0.000 1 0.000 1 0.000 1 0.000 2 0.000 2 0.000 1 0.000 1 0.000 13 0.991 0.0 0.991
15669 T15669C|(ORF1ab_polyprotein:T15405C(N5135N)) 1 0.000 1 0.000 2 0.000 2 0.000 114 1.000 1 0.000 2 0.000 5 0.000 2 0.000 1 0.000 2 0.000 3 0.000 12 1.0 0.0 1.0
15720 RATG13 C15720T|(ORF1ab_polyprotein:C15456T(D5152D)) 1 0.000 189 1.000 1 0.000 907 0.997 1 0.000 5 1.9969999999999999 0.0 1.9969999999999999
15839 G15839A|(ORF1ab_polyprotein:G15575A(W5192*)) 191 0.995 1 0.000 2 0.000 2 0.001 4 0.995 0.001 0.996
15906 G15906A|(ORF1ab_polyprotein:G15642A(Q5214Q)) 4 0.001 191 1.000 2 0.000 2 0.000 1 0.000 5 1.0 0.001 1.001
15930 T15930C|(ORF1ab_polyprotein:T15666C(P5222P)) 2 0.000 1 0.000 1 0.000 189 1.000 1 0.000 1 0.001 1 0.000 1 0.000 1 0.000 9 1.001 0.0 1.001
15950 T15950C|(ORF1ab_polyprotein:T15686C(I5229T)) 189 1.000 1 0.000 2 0.000 2 0.000 1 0.000 5 1.0 0.0 1.0
15981 C15981A|(ORF1ab_polyprotein:C15717A(I5239I)) 3 0.001 189 1.000 1 0.000 2 0.000 1 0.000 1 0.001 2 0.000 2 0.000 1 0.000 3 0.000 1 0.000 11 1.001 0.001 1.0019999999999998
16092 C16092T|(ORF1ab_polyprotein:C15828T(Y5276Y)) 5349 0.999 1 0.000 1 0.000 1 0.000 4 0.000 3 0.000 2 0.000 1 0.000 1 0.000 4 0.000 1 0.000 1 0.000 2 0.000 13 0.999 0.0 0.999
16173 C16173T|(ORF1ab_polyprotein:C15909T(N5303N)) 2 0.000 1 0.000 5362 0.999 5 0.000 5 0.000 1 0.000 1 0.000 1 0.000 3 0.000 1 0.000 2 0.000 1 0.000 1 0.000 13 0.999 0.0 0.999
16176 T16176C|(ORF1ab_polyprotein:T15912C(T5304T)) 4 0.000 2 0.000 5360 0.998 5 0.000 7 0.000 6 0.000 1 0.000 11 0.000 72 0.003 3 0.000 4 0.000 8 0.000 7 0.000 1 0.000 2 0.000 7 0.000 5 0.000 8 0.000 7 0.000 2 0.000 7 0.000 5 0.000 1 0.000 23 1.001 0.0 1.001
linked 16357 T16357C|(ORF1ab_polyprotein:T16093C(L5365L)) 2 0.000 21 0.001 3 0.000 2 0.000 5 0.000 4 0.000 2 0.000 1 0.000 4 0.000 5 0.000 56 0.004 2 0.000 1 0.000 2 0.000 3 0.000 2 0.000 2 0.000 17 0.004 0.001 0.005
16410 16410-insertTT|(ORF1ab_polyprotein:ACAGAT16144-16149ACTTAATinsert(TD5382-5383T*insert;fs)) 1 0.500 1 0.5 0 0.5
16411 G16411-16411del|(ORF1ab_polyprotein:ACAGAT16144-16149ACTTAATinsert(TD5382-5383T*insert;fs)) 1 0.500 1 0.5 0 0.5
16425 T16425G|(ORF1ab_polyprotein:T16161G(L5387L)) 1 0.000 54 1.000 1 0.001 1 0.001 1 0.001 5 1.0 0.003 1.003
16529 T16529C|(ORF1ab_polyprotein:T16265C(V5422A)) 218 0.508 1 0.000 2 0.508 0.0 0.508
16667 C16667T|(ORF1ab_polyprotein:C16403T(T5468I)) 1 0.000 2 0.000 39138 0.997 6 0.000 2 0.000 1 0.000 3 0.000 1 0.000 3 0.000 15453 0.308 1 0.000 1 0.000 12 1.305 0.0 1.305
17088 T17088A|(ORF1ab_polyprotein:T16824A(P5608P)) 5 0.000 1 0.000 1 0.000 8 0.000 2 0.000 2 0.000 2 0.000 1 0.000 1 0.000 4528 0.384 4 0.000 2 0.000 4 0.000 4 0.000 5009 0.999 4 0.000 1 0.000 3 0.000 2 0.000 4 0.000 1 0.000 1 0.000 22 1.383 0.0 1.383
linked 17124 T17124C|(ORF1ab_polyprotein:T16860C(A5620A)) 1 0.000 5882 0.996 3 0.000 2 0.000 1 0.000 4 0.000 3 0.000 2 0.000 3 0.000 2 0.000 1 0.000 12 0.000 12 0.001 3 0.001 1 0.000 2 0.000 1 0.000 3591 0.164 1 0.000 1 0.000 20 0.997 0.165 1.162
17200 TT17200-17201del|(ORF1ab_polyprotein:16936-16937del(5646fs)) 5886 0.996 1 0.996 0 0.996
17206 T17206C|(ORF1ab_polyprotein:T16942C(Y5648H)) 2 0.000 1 0.000 5877 0.995 1 0.000 2 0.000 1 0.000 22710 0.998 4680 0.382 1 0.000 1 0.000 5041 0.996 8839 0.505 1 0.000 1 0.000 2 0.000 2641 0.085 16 3.8760000000000003 0.085 3.9610000000000003
17214 T17214C|(ORF1ab_polyprotein:T16950C(P5650P)) 1 0.000 5869 0.994 4 0.000 3 0.000 2 0.000 1 0.000 2 0.000 1 0.000 1 0.000 5 0.000 3 0.000 2 0.000 1 0.000 2 0.000 4 0.000 2 0.000 16 0.994 0.0 0.994
17615 A17615G|(ORF1ab_polyprotein:A17351G(K5784R)) 7 0.000 7 0.000 5 0.000 6 0.000 4 0.000 4 0.000 39684 0.999 16267 0.464 3 0.000 1 0.000 4 0.000 19410 0.513 1 0.000 1 0.000 6 0.000 6 0.000 6 0.000 2 0.000 3 0.000 19 1.976 0.0 1.976
17628 T17628C|(ORF1ab_polyprotein:T17364C(H5788H)) 2 0.000 2 0.000 1 0.000 3 0.000 1 0.000 1 0.000 4 0.000 39865 0.999 1 0.000 4 0.000 1 0.000 2 0.000 1 0.000 3 0.000 2 0.000 2 0.000 3 0.000 6 0.000 3 0.000 1 0.000 20 0.999 0.0 0.999
17685 TG17685-17686del|(ORF1ab_polyprotein:17421-17422del(5807fs)) 39872 0.998 1 0.998 0 0.998
18049 G18049A|(ORF1ab_polyprotein:G17785A(V5929I)) 1 0.000 1 0.000 1 0.000 1 0.000 1 0.000 1240 0.414 6 0.414 0.0 0.414
linked 18163 A18163G|(ORF1ab_polyprotein:A17899G(I5967V)) 9730 0.999 14709 0.999 2 0.000 10477 0.999 24543 0.999 18474 0.999 14707 0.999 24920 0.999 20441 1.000 2020 0.612 7457 0.766 5401 0.999 5016 0.998 12827 0.993 13258 0.991 676 0.980 4897 0.755 5881 1.000 5927 0.999 17135 0.999 9107 0.999 14156 0.999 7036 0.999 9759 0.999 10919 0.999 25 4.112 18.968 23.08
18395 C18395T|(ORF1ab_polyprotein:C18131T(A6044V)) 1897 1.000 1 0.000 1277 1.000 1578 0.589 4 2.589 0.0 2.589
18428 A18428G|(ORF1ab_polyprotein:A18164G(N6055S)) 3 0.000 1578 0.589 1 0.000 3 0.589 0.0 0.589
18486 RATG13 C18486T|(ORF1ab_polyprotein:C18222T(L6074L)) 4 0.000 1272 0.985 1540 0.589 3 1.5739999999999998 0.0 1.5739999999999998
18842 A18842C|(ORF1ab_polyprotein:A18578C(H6193P)) 21 0.001 27 0.001 16 0.000 12 0.001 6 0.001 14 0.001 16 0.001 13 0.001 12 0.001 8 0.000 17 0.001 3 0.001 4 0.001 1 1.000 17 0.001 21 0.001 14 0.000 9 0.000 9 0.000 29 0.000 20 0.000 1 0.000 22 1.0019999999999998 0.011000000000000003 1.0129999999999997
18862 A18862G|(ORF1ab_polyprotein:A18598G(I6200V)) 5 0.000 3 0.000 3 0.000 2 0.000 1 0.000 2 1.000 2 0.000 3 0.000 1 0.000 3 0.000 1 0.000 3 0.000 2 0.000 1 0.000 6 0.000 5 0.000 16 1.0 0.0 1.0
18862 AT18862-18863del|(ORF1ab_polyprotein:18598-18599del(6200fs)) 1 1.000 1 1.0 0 1.0
18865 A18865T|(ORF1ab_polyprotein:A18601T(M6201L)) 3 0.000 7 0.000 4 0.000 2 0.000 2 1.000 2 0.000 1 0.000 1 0.000 1 0.000 2 0.000 6 0.000 4 0.000 5 0.000 9 0.000 9 0.000 2 0.000 16 1.0 0.0 1.0
linked 18894 C18894T|(ORF1ab_polyprotein:C18630T(C6210C)) 22526 0.997 51095 0.997 10943 0.992 12070 0.994 8746 0.998 19706 0.999 21387 0.997 16084 0.997 12095 0.999 21105 0.998 24013 0.998 5276 0.998 7197 0.998 1 1.000 26846 0.998 29987 0.998 30494 0.998 18730 0.998 29869 0.998 66269 0.998 64817 0.998 7359 0.998 22 2.997 18.948999999999998 21.945999999999998
19252 G19252T|(ORF1ab_polyprotein:G18988T(V6330L)) 8 0.001 3 0.000 2 0.000 7 0.001 8 0.000 1 0.000 1 0.000 1 0.000 1 0.000 3 0.000 2749 0.532 1 0.000 3 0.000 6 0.001 1 0.000 8 0.001 16 0.532 0.004 0.536
19524 RATG13 C19524T|(ORF1ab_polyprotein:C19260T(L6420L)) 17 0.000 14 0.000 3 0.000 3 0.000 2 0.000 5 0.000 3 0.000 1 0.000 20 1.000 3 0.000 1 0.000 4 0.000 3 0.000 2 0.000 5 0.000 5 0.000 6 0.000 4 0.000 2 0.000 19 1.0 0.0 1.0
19586 C19586T|(ORF1ab_polyprotein:C19322T(T6441I)) 3 0.000 7 0.000 1 0.000 1 0.000 3 0.000 4 0.000 20 1.000 1 0.000 1 0.000 2 0.000 1 0.000 5 0.000 2 0.000 1 0.000 14 1.0 0.0 1.0
19660 C19660T|(ORF1ab_polyprotein:C19396T(H6466Y)) 2 0.000 3 0.000 3 0.000 1 0.000 1 0.000 5 0.000 4 0.000 20 1.000 3 0.000 1 0.000 5 0.000 1 0.000 1 0.000 5 0.000 5 0.000 5 0.000 1 0.000 1 0.000 18 1.0 0.0 1.0
19672 C19672T|(ORF1ab_polyprotein:C19408T(Q6470*)) 4 0.000 8 0.000 3 0.000 3 0.000 1 0.000 5 0.000 3 0.000 20 1.000 3 0.000 1 0.000 3 0.000 2 0.000 3 0.000 3 0.000 2 0.000 1 0.000 3 0.000 6 0.000 1 0.000 2 0.000 20 1.0 0.0 1.0
19718 C19718T|(ORF1ab_polyprotein:C19454T(T6485I)) 2 0.000 3 0.000 1 0.000 3 0.000 3 0.000 1 0.000 5 0.000 3 0.000 20 1.000 1 0.000 2 0.000 3 0.000 1 0.000 1 0.000 2 0.000 2 0.000 3 0.000 9 0.000 1 0.000 1 0.000 20 1.0 0.0 1.0
ubiq 19955 C19955T|(ORF1ab_polyprotein:C19691T(T6564I)) 23094 0.997 16452 0.997 2616 0.999 9900 0.999 15890 0.999 16208 0.999 36118 0.999 18810 0.998 22611 0.998 86 0.989 1989 0.996 2944 0.998 8634 0.998 8745 0.998 23396 0.999 19020 0.998 840 0.998 4548 0.986 12036 0.988 40655 0.998 44020 0.999 51995 0.998 33421 0.999 31619 0.998 17522 0.997 25 5.978 18.943999999999996 24.921999999999997
ubiq 20055 A20055G|(ORF1ab_polyprotein:A19791G(E6597E)) 22105 0.999 15789 0.999 2610 1.000 11534 0.996 15839 0.999 15993 0.999 35727 0.999 18482 0.999 22273 0.999 85 1.000 1940 1.000 2818 0.998 8301 0.999 8543 0.998 22930 0.999 18786 0.999 801 1.000 4149 0.999 11487 0.999 39824 0.999 42744 0.999 47605 0.999 30736 0.999 29272 0.999 16779 0.999 25 5.998 18.976 24.974
20302 G20302A|(ORF1ab_polyprotein:G20038A(E6680K)) 1 0.001 6134 0.557 2 0.557 0.001 0.558
20407 T20407G|(ORF1ab_polyprotein:T20143G(F6715V)) 14 0.001 10 0.001 1 0.001 2 0.000 1 0.000 6 0.000 1 0.000 6065 0.536 1 0.000 3 0.000 2 0.000 3 0.000 1 0.000 2 0.001 14 0.536 0.004 0.54
20781 G20781T|(ORF1ab_polyprotein:G20517T(M6839I)) 26 0.000 3 0.000 7 0.000 3 0.000 2 0.000 2 0.000 4 0.000 8 0.001 13 0.001 15 0.001 3 0.000 6 0.000 1 0.000 8116 0.999 2 0.000 5 0.000 4 0.000 2 0.000 3 0.000 19 1.0 0.002 1.002
21512 A21512G|(ORF1ab_polyprotein:A21248G(N7083S)) 1 0.000 29065 0.998 1 0.002 1 0.000 1 0.000 5 1.0 0.0 1.0
21601 TCAGTGTGT21601-21609del|(surface_glycoprotein:AGTCAGTGTGTT37-48AGTdel(SQCV13-16Sdel)) 28795 0.999 1 0.999 0 0.999
21625 AACTCAATTACCCCCTGCATACACTAATTCTTT21625-21657del|(surface_glycoprotein:AGAACTCAATTACCCCCTGCATACACTAATTCTTTC61-96AGCdel(RTQLPPAYTNSF21-32Sdel)) 28733 0.999 1 0.999 0 0.999
21676 C21676T|(surface_glycoprotein:C114T(Y38Y)) 2 0.000 28744 0.999 1 0.000 3 0.999 0.0 0.999
linkedubiq 22194 ATT22194-22196del|(surface_glycoprotein:AATTTA631-636ATAdel(NL211-212Idel)) 53956 0.997 77917 0.998 20315 0.999 22307 0.999 71311 0.999 41645 0.999 41804 0.999 63715 0.999 41870 0.999 457 1.000 31039 0.999 20952 0.999 37961 0.999 57088 0.999 64850 0.998 27946 0.999 40334 0.999 8571 1.000 14490 0.999 36595 0.999 60669 0.999 54782 0.999 38557 0.998 16285 0.999 46071 0.999 25 5.995 18.977 24.972
linked 22200 T22200A|(surface_glycoprotein:T638A(V213E)) 2 0.000 20393 0.999 7892 0.188 4971 0.118 91 0.197 1 0.000 7279 0.191 2 0.000 727 0.018 1 0.000 5039 0.083 2 0.000 2 0.000 13 1.214 0.5800000000000001 1.794
22272 G22272T|(surface_glycoprotein:G710T(R237M)) 3 0.000 2 0.000 20449 0.995 2 0.000 3 0.000 1 0.000 5 0.000 91 0.196 1 0.000 2 0.000 1 0.000 2 0.000 750 0.037 1 0.000 3 0.000 1 0.001 2 0.000 17 1.228 0.001 1.2289999999999999
22285 ACTTGCTTTACATAG22285-22299del|(surface_glycoprotein:TTACTTGCTTTACATAGA721-738TTAdel(LLALHR241-246Ldel)) 20493 0.998 91 0.194 752 0.036 3 1.228 0 1.228
22332 G22332A|(surface_glycoprotein:G770A(G257D)) 1 0.000 20530 0.999 2 0.000 91 0.194 1 0.000 756 0.037 1 0.000 3 0.000 1 0.000 9 1.23 0.0 1.23
22599 G22599T|(surface_glycoprotein:G1037T(R346I)) 1 0.000 3 0.000 2217 0.999 1046 0.978 1 0.000 1 0.000 1 0.000 2681 0.190 8 2.167 0.0 2.167
22673 T22673A|(surface_glycoprotein:TCC1111-1113AAC(S371N)) 2219 1.000 1 0.000 1060 0.981 1 0.000 1 0.000 1 0.000 2792 0.188 7 2.169 0.0 2.169
22674 C22674A|(surface_glycoprotein:TCC1111-1113AAC(S371N)) 2219 1.000 1 0.000 1060 0.981 1 0.000 1 0.000 1 0.000 2792 0.188 7 2.169 0.0 2.169
linkedubiq 22770 G22770A|(surface_glycoprotein:G1208A(R403K)) 13713 0.998 16834 0.998 2208 0.999 972 0.207 5373 0.999 7549 0.999 12167 0.999 4532 0.998 7259 0.999 1043 0.995 2637 0.999 1217 0.997 3551 0.999 3189 0.994 7013 0.997 5479 0.999 271 0.989 1666 0.998 1089 0.998 10979 0.999 18067 0.999 29867 0.999 50563 0.999 13974 0.999 5435 0.997 25 5.9799999999999995 18.173 24.153
22784 A22784G|(surface_glycoprotein:A1222G(R408G)) 2200 0.163 1042 0.554 2338 0.366 3 1.083 0 1.083
linked 22786 A22786C|(surface_glycoprotein:A1224C(R408S)) 18145 0.998 17232 0.998 4683 0.999 7079 0.998 14035 0.999 12267 0.998 11328 0.999 8152 0.998 836 0.444 2634 0.998 6488 0.999 4627 0.999 6622 0.989 7404 0.995 5871 0.995 4037 0.632 1751 0.996 1670 0.998 11394 0.999 18773 0.999 29871 0.998 50519 0.998 13960 0.998 6557 0.998 24 4.067 18.955000000000002 23.022000000000002
22811 A22811C|(surface_glycoprotein:AAG1249-1251CTG(K417L)) 13439 0.999 1642 0.872 2340 0.366 2667 0.191 4 2.428 0 2.428
22812 A22812T|(surface_glycoprotein:AAG1249-1251CTG(K417L)) 13439 0.999 1642 0.872 2340 0.366 2667 0.191 4 2.428 0 2.428
22891 TAAGGT22891-22896del|(surface_glycoprotein:TCTAAGGTT1327-1335TCTdel(SKV443-445Sdel)) 11297 0.999 607 0.695 2353 0.382 3 2.076 0 2.076
22907 T22907C|(surface_glycoprotein:T1345C(Y449H)) 1 0.000 11298 0.999 606 0.693 2356 0.382 3 0.003 5 2.074 0.003 2.077
22917 T22917A|(surface_glycoprotein:T1355A(L452Q)) 11296 0.999 607 0.695 2355 0.382 3 2.076 0 2.076
22926 T22926G|(surface_glycoprotein:T1364G(L455W)) 2 0.000 1 0.002 2 0.001 1 0.001 3 0.000 607 0.695 2 0.000 1 0.000 1 0.001 9 0.695 0.005 0.7
linked 22928 T22928C|(surface_glycoprotein:T1366C(F456L)) 39 0.008 261 0.607 110 0.030 767 0.445 144 0.022 110 1.000 4565 0.661 436 0.466 608 0.696 5413 0.998 1020 0.913 3596 0.999 418 0.991 421 0.995 3793 0.616 88 1.000 550 0.889 236 0.561 723 0.993 20 0.714 5 1.000 1 1.000 1166 0.994 23 3.3070000000000004 13.290999999999999 16.598
22938 C22938A|(surface_glycoprotein:C1376A(S459Y)) 2 0.000 11304 1.000 3 0.000 3 0.000 612 0.696 1 0.000 2356 0.383 7 2.0789999999999997 0.0 2.0789999999999997
22942 T22942G|(surface_glycoprotein:T1380G(N460K)) 11294 0.999 1 0.000 1 0.000 613 0.697 2355 0.382 5 2.078 0.0 2.078
linked 22992 G22992A|(surface_glycoprotein:G1430A(S477N)) 4600 0.998 428 0.998 11304 1.000 3730 0.999 1723 0.999 6602 0.998 110 1.000 6887 0.998 932 0.998 879 1.000 5417 0.999 1113 0.997 3600 1.000 423 0.998 423 1.000 6150 0.999 88 1.000 619 1.000 421 1.000 728 1.000 28 1.000 5 1.000 1 1.000 1173 1.000 24 4.9990000000000006 18.982 23.981
linked 23008 TGT23008-23010del|(surface_glycoprotein:GGTGTT1444-1449GGTdel(GV482-483Gdel)) 4498 0.997 419 0.993 11294 0.999 3726 0.998 1722 0.999 6534 0.998 110 1.000 6819 0.999 922 1.000 260 0.297 5273 0.999 1090 1.000 3562 0.998 420 1.000 417 1.000 3772 0.616 88 1.000 588 0.983 416 1.000 722 0.999 27 1.000 5 1.000 1 1.000 1124 0.989 24 3.9120000000000004 18.951999999999998 22.863999999999997
23011 TGA23011-23013del|(surface_glycoprotein:GTTGAA1447-1452GTAdel(VE483-484Vdel)) 611 0.699 1 0.699 0 0.699
23029 C23029T|(surface_glycoprotein:C1467T(Y489Y)) 11257 0.996 1 0.000 2 0.996 0.0 0.996
23039 C23039A|(surface_glycoprotein:C1477A(Q493K)) 2 0.000 11288 0.998 3 0.001 2336 0.382 4 1.38 0.001 1.3809999999999998
23048 G23048A|(surface_glycoprotein:G1486A(G496S)) 612 0.701 1 0.701 0 0.701
linked 23055 A23055G|(surface_glycoprotein:A1493G(Q498R)) 4505 0.999 420 0.995 11239 0.999 3723 0.999 1715 0.999 6545 0.999 110 1.000 6820 0.999 919 0.997 870 0.997 5275 0.999 1090 0.999 3570 0.999 420 1.000 417 1.000 6107 0.999 88 1.000 597 0.998 415 1.000 723 1.000 27 1.000 5 1.000 2 1.000 1134 0.997 24 4.995 18.979 23.974
23057 C23057T|(surface_glycoprotein:C1495T(P499S)) 11240 0.999 1 0.000 2 0.000 1 0.000 4 0.999 0.0 0.999
23060 A23060G|(surface_glycoprotein:A1498G(T500A)) 1 0.000 611 0.700 1 0.000 1 0.001 4 0.7 0.001 0.701
linked 23063 A23063T|(surface_glycoprotein:A1501T(N501Y)) 4499 0.998 422 1.000 11242 0.999 3723 0.999 1714 0.999 6547 1.000 110 1.000 6814 0.998 922 1.000 873 1.000 5271 0.999 1090 0.999 3555 0.994 420 1.000 416 0.998 6104 0.999 88 1.000 598 1.000 415 1.000 723 1.000 27 1.000 5 1.000 2 1.000 1136 0.999 24 4.9959999999999996 18.984999999999996 23.980999999999995
linked 23075 RATG13 T23075C|(surface_glycoprotein:T1513C(Y505H)) 4497 0.998 422 1.000 11245 0.999 3719 0.998 1716 1.000 6543 0.999 110 1.000 6812 0.998 919 0.997 872 0.999 5270 0.998 1091 1.000 3572 0.999 420 1.000 417 1.000 6107 0.999 87 0.989 597 1.000 415 1.000 723 1.000 27 1.000 5 1.000 2 0.667 1136 0.999 24 4.664 18.975 23.639000000000003
23078 C23078T|(surface_glycoprotein:C1516T(Q506*)) 1 0.001 2 1.000 1 0.000 1 0.000 4 1.0 0.001 1.001
23119 T23119A|(surface_glycoprotein:T1557A(H519Q)) 37 0.000 35 0.000 26 0.001 7 0.000 16 0.000 25 0.000 47 0.001 24 0.000 17 0.000 8806 0.998 10 0.000 12 0.000 11 0.000 13 0.000 24 0.000 3 0.000 4 0.000 6 0.000 6 0.000 18 0.000 14 0.000 29 0.000 33 0.000 44 0.000 9 0.000 25 0.999 0.001 1.0
23202 C23202T|(surface_glycoprotein:C1640T(T547I)) 2 0.000 1 0.000 2 0.000 1 0.000 2 0.000 2 0.000 3 0.000 5 0.000 6 0.000 8836 0.999 1 0.000 2 0.000 2 0.000 2 0.000 1 0.000 1 0.000 1 0.000 2 0.000 3 0.000 4 0.000 1 0.000 21 0.999 0.0 0.999
linked 23222 G23222A|(surface_glycoprotein:G1660A(E554K)) 91893 0.997 94031 0.997 5 0.000 38972 0.999 58972 0.999 56792 0.997 78635 0.997 82454 0.998 64942 0.998 39887 0.998 28630 0.998 42461 0.998 55618 0.999 74183 0.999 23687 0.999 24431 0.999 28092 0.993 30346 0.992 56858 0.946 51833 0.997 75608 0.995 75855 0.995 76176 0.775 29079 0.997 24 3.771 18.891 22.662
23271 C23271A|(surface_glycoprotein:C1709A(A570D)) 40 0.000 32 0.000 51558 0.999 6 0.000 6 0.000 12 0.000 13 0.000 26 0.000 16 0.000 9113 0.967 11 0.000 7 0.000 8 0.000 13 0.000 19 0.000 6 0.000 606 0.023 15 0.000 9 0.000 13 0.000 23 0.000 15 0.000 15 0.000 21625 0.215 16 0.000 25 2.204 0.0 2.204
linked 23271 C23271T|(surface_glycoprotein:C1709T(A570V)) 101288 0.996 98021 0.996 5 0.000 48899 0.998 70877 0.998 84834 0.997 84298 0.996 107931 0.998 82421 0.998 293 0.031 42748 0.998 32232 0.998 45432 0.998 62025 0.996 82010 0.996 31224 0.993 25653 0.975 40500 0.998 38741 0.998 73835 0.998 76337 0.999 83402 0.989 78109 0.988 77635 0.773 41637 0.998 25 3.77 18.932999999999996 22.702999999999996
linkedubiq 23403 Delta A23403G|(surface_glycoprotein:A1841G(D614G)) 99942 0.998 96544 0.998 51463 0.999 48959 0.999 70874 0.999 84537 0.999 83394 0.999 107607 0.998 82054 0.998 9372 0.997 41605 0.999 31459 0.999 44066 0.999 61496 0.994 81147 0.994 31121 0.994 26112 0.999 39754 0.998 37730 0.998 72823 0.998 75727 0.997 78360 0.996 72843 0.998 92386 0.998 41056 0.998 25 5.986 18.956999999999997 24.942999999999998
23405 G23405A|(surface_glycoprotein:G1843A(V615I)) 3 0.000 1 0.000 2448 0.048 2 0.000 1 0.000 3 0.000 4 0.000 6 0.000 4 0.000 8838 0.941 3 0.000 3 0.000 3 0.000 3 0.000 2 0.000 2 0.000 7 0.000 2 0.000 2 0.000 1 0.000 20054 0.217 21 1.206 0.0 1.206
linked 23423 C23423T|(surface_glycoprotein:C1861T(P621S)) 100015 0.998 96630 0.999 2 0.000 48971 0.999 70899 0.999 84580 0.999 83429 0.999 107737 0.999 82155 0.999 315 0.034 41620 0.999 31463 0.999 44078 0.999 61851 0.999 81555 0.999 31279 0.999 25489 0.975 39837 0.999 37783 0.999 72921 0.999 75838 0.999 78528 0.998 72889 0.999 72395 0.782 41068 0.998 25 3.789 18.977999999999998 22.767
23590 T23590C|(surface_glycoprotein:T2028C(T676T)) 2442 0.999 3 0.000 1 0.000 2 0.000 1 0.000 3 0.000 8 0.015 1 0.000 5 0.001 2 0.000 1 0.000 1 0.000 1 0.000 13 1.014 0.001 1.015
linked 23599 T23599G|(surface_glycoprotein:T2037G(N679K)) 53136 0.977 39435 1.000 28490 0.999 33619 0.999 36751 0.999 14587 1.000 48301 0.999 23670 1.000 21147 0.521 42829 1.000 31745 1.000 29643 0.999 13385 0.459 28336 0.999 30848 1.000 5322 0.896 16276 0.999 21808 0.999 38894 0.956 47361 1.000 17938 0.994 80662 0.994 61028 0.993 24224 1.000 24 4.41 18.371999999999996 22.781999999999996
linked 23604 C23604A|(surface_glycoprotein:C2042A(P681H)) 3 0.000 2 0.000 6 0.000 5 0.000 1 0.000 19260 0.473 3 0.000 2 0.000 3 0.000 1 0.000 1 0.000 2 0.000 1 0.000 7 0.000 1 0.000 1331 0.054 16 0.473 0.054 0.527
linked 23604 Delta C23604G|(surface_glycoprotein:C2042G(P681R)) 53395 0.999 39632 0.999 28450 0.999 33866 0.999 36958 0.999 14664 0.999 48604 0.999 23858 0.999 21382 0.526 43022 0.999 31924 0.999 29829 0.999 29009 0.981 27991 0.979 30410 0.980 5351 0.999 16396 0.999 21914 0.999 40857 0.999 47597 0.999 18186 0.999 91659 0.999 61858 0.999 23088 0.944 24 4.503 18.887999999999998 23.391
23610 G23610A|(surface_glycoprotein:G2048A(R683Q)) 3 0.000 1 0.000 2 0.000 1 0.000 19338 0.474 3 0.000 1 0.000 1 0.000 3 0.000 1 0.000 2 0.000 7 0.000 12 0.474 0.0 0.474
linked 23660 G23660C|(surface_glycoprotein:G2098C(G700R)) 13 0.000 13 0.000 1 0.000 1 0.000 3 0.000 1 0.000 13 0.000 4 0.000 7 0.000 6 0.000 3 0.000 4 0.000 2 0.000 3 0.000 2 0.000 2 0.000 3 0.000 3 0.000 3 0.000 12 0.000 9 0.000 5 0.000 22 0.0 0.0 0.0
23688 A23688C|(surface_glycoprotein:A2126C(N709T)) 15 0.000 13 0.000 1 0.000 2 0.000 3 0.000 5 0.000 3 0.000 19492 0.473 4 0.000 3 0.000 2 0.000 2 0.000 4 0.000 1 0.000 6 0.000 4 0.000 2 0.000 1 0.000 10 0.000 4 0.000 9 0.000 21 0.473 0.0 0.473
23757 C23757T|(surface_glycoprotein:C2195T(T732I)) 1 0.000 1 0.000 1 0.000 4 0.000 4 0.000 1 0.000 19490 0.473 1 0.000 1 0.000 2 0.000 2 0.000 2 0.000 2 0.000 1 0.000 3 0.000 15 0.473 0.0 0.473
23780 A23780G|(surface_glycoprotein:A2218G(M740V)) 3 0.000 2 0.000 3 0.000 2 0.000 3 0.000 3 0.000 19493 0.473 2 0.000 7 0.000 1 0.000 4 0.000 5 0.000 4 0.000 5 0.000 4 0.000 3 0.000 14 0.000 8 0.000 5 0.000 19 0.473 0.0 0.473
linked 23854 C23854A|(surface_glycoprotein:C2292A(N764K)) 53866 0.998 39749 0.998 64150 0.998 34187 0.996 38129 0.996 14712 0.996 49351 0.998 24352 0.998 21497 0.486 43217 0.999 31980 0.998 29929 0.999 30006 0.999 28846 0.998 31156 0.999 5399 1.000 17125 0.999 22386 0.999 41528 0.999 48289 0.999 18264 0.998 91772 0.999 61910 0.999 24791 0.998 24 4.4830000000000005 18.963 23.446
23897 C23897A|(surface_glycoprotein:C2335A(Q779K)) 11 0.000 7 0.000 5 0.000 9 0.000 7 0.000 7 0.000 4 0.000 14 0.000 9 0.000 22714 0.514 7 0.000 10 0.000 7 0.000 3 0.000 18 0.000 3 0.000 3 0.000 2 0.000 7 0.000 11 0.000 7 0.000 13 0.000 8 0.000 14 0.000 24 0.514 0.0 0.514
linked 23915 G23915T|(surface_glycoprotein:G2353T(V785F)) 2 0.000 1 0.000 18 0.000 5 0.000 1 0.000 4 0.000 3 0.000 2 0.000 5 0.001 1 0.014 9 0.000 2 0.000 1 0.000 1 0.000 2 0.000 2 0.000 1 0.000 17 0.015 0.0 0.015
linked 23945 A23945T|(surface_glycoprotein:AAA2383-2385TGA(K795*)) 1 0.333 1 0.333 0 0.333
23946 A23946G|(surface_glycoprotein:AAA2383-2385TGA(K795*)) 1 1.000 1 1.0 0 1.0
24044 C24044T|(surface_glycoprotein:C2482T(L828F)) 27317 0.999 2 0.000 2 0.000 1 0.000 3 0.000 3 0.000 3612 0.998 4 0.000 1 0.000 4 0.000 1 0.000 1 0.000 12 1.9969999999999999 0.0 1.9969999999999999
24130 RATG13 C24130T|(surface_glycoprotein:C2568T(N856N)) 2 0.000 1 0.000 27216 0.999 4 0.000 4 0.000 5 0.000 2 0.000 1 0.000 3 0.000 3471 0.999 1 0.000 1 0.000 1 0.000 1 0.000 1 0.000 3 0.000 3 0.000 17 1.998 0.0 1.998
24202 T24202C|(surface_glycoprotein:T2640C(G880G)) 1 0.000 716 0.481 2 0.481 0.0 0.481
24271 T24271C|(surface_glycoprotein:T2709C(A903A)) 724 0.482 223 0.207 2 0.689 0 0.689
24457 A24457G|(surface_glycoprotein:A2895G(Q965Q)) 727 0.483 1 0.005 219 0.204 3 0.692 0 0.692
linked 24488 G24488T|(surface_glycoprotein:G2926T(V976F)) 3 0.000 1 0.000 1 0.000 1 0.000 1 0.000 1 0.000 4 0.000 4 0.000 725 0.065 2 0.000 2 0.000 1 0.000 6 0.000 1 0.000 1 0.000 2 0.000 16 0.065 0.0 0.065
24556 A24556G|(surface_glycoprotein:A2994G(T998T)) 3 0.000 3 0.000 3 0.000 2 0.000 2 0.000 6 0.000 7375 0.758 1 0.000 2 0.000 3 0.000 1 0.000 2 0.000 2 0.000 3 0.000 14 0.758 0.0 0.758
24752 24752-insertCTCA|(surface_glycoprotein:3190insertCTCA(1064fs)) 4 0.667 1 0.667 0 0.667
24774 A24774G|(surface_glycoprotein:A3212G(Q1071R)) 3 0.000 1 0.000 2 0.000 1 0.000 1 0.000 5 0.000 2 0.000 3 0.000 4 0.667 1 0.000 2 0.000 3 0.000 1 0.000 13 0.667 0.0 0.667
linked 24819 A24819G|(surface_glycoprotein:A3257G(K1086R)) 5 0.000 1 0.000 1 0.000 5167 0.244 1 0.000 2 0.000 2 0.001 4750 0.293 2 0.000 1881 0.194 7917 0.377 9842 0.999 2 0.000 1299 0.101 1713 0.114 5411 0.124 13136 0.301 6 0.000 3 0.000 3247 0.193 20 1.293 1.648 2.941
linked 24872 G24872T|(surface_glycoprotein:G3310T(V1104L)) 5155 0.094 2 0.000 3504 0.218 14373 0.715 1 0.000 2327 0.188 11735 0.725 11810 0.540 2388 0.253 12081 0.590 9575 0.999 2444 0.299 8719 0.676 4968 0.330 9390 0.351 10242 0.234 28428 0.653 35652 0.473 32039 0.742 15048 0.915 20 2.765 6.23 8.995000000000001
24921 C24921T|(surface_glycoprotein:C3359T(T1120I)) 2 0.000 1 0.000 1 0.000 5 0.000 5028 0.522 1 0.000 1 0.000 1 0.000 2 0.000 9 0.522 0.0 0.522
linked 24990 C24990T|(surface_glycoprotein:C3428T(P1143L)) 56174 0.992 15418 0.993 3653 0.998 16032 0.998 19998 0.998 29377 0.997 1314 0.998 12474 0.997 4026 0.998 16535 0.998 22404 0.997 9426 0.996 20488 0.995 9566 0.995 8193 0.997 13250 0.997 15552 0.997 27113 0.997 44386 0.997 46377 0.996 80410 0.996 45846 0.996 17020 0.996 23 4.984 17.935 22.918999999999997
linked 25000 RATG13 C25000T|(surface_glycoprotein:C3438T(D1146D)) 56220 0.993 15448 0.995 3650 0.997 16024 0.998 19965 0.996 29340 0.996 1311 0.995 12458 0.996 4028 0.999 16507 0.996 22395 0.997 9430 0.996 20526 0.997 9579 0.996 8189 0.996 13243 0.997 15547 0.997 27038 0.994 44239 0.994 46392 0.996 80463 0.997 45862 0.996 17032 0.997 23 4.983 17.928 22.911
25135 G25135T|(surface_glycoprotein:G3573T(K1191N)) 1 0.000 1 0.000 607 0.547 1 0.001 3 0.002 5 0.547 0.003 0.55
25162 C25162A|(surface_glycoprotein:C3600A(L1200L)) 2 0.001 2 0.000 1 0.000 605 0.546 1 0.000 1 0.000 1 0.001 1 0.001 8 0.546 0.003 0.549
25163 C25163A|(surface_glycoprotein:C3601A(Q1201K)) 1 0.000 1 0.001 1 0.000 2 0.000 1 0.000 606 0.547 1 0.000 1 0.000 1 0.001 1 0.000 1 0.000 11 0.547 0.002 0.549
25368 A25368C|(surface_glycoprotein:A3806C(K1269T)) 1 1.000 1 1.0 0 1.0
linked 25373 25373-insertT|(surface_glycoprotein:3811insertT(1271fs)) 1 0.250 1 0.25 0 0.25
25420 RATG13 A25420C|(ORF3a_protein:A28C(I10L)) 16 0.000 5 0.000 4 0.000 13 0.000 3 0.000 8 0.000 12 0.000 5 1.000 4 0.000 6 0.000 5 0.000 7 0.000 7 0.000 8 0.000 2 0.000 8 0.000 10 0.000 7 0.000 5 0.000 2 0.000 20 1.0 0.0 1.0
25511 C25511G|(ORF3a_protein:C119G(S40*)) 31 0.001 3 0.000 13 0.000 7 0.001 13 0.001 18 0.001 13 0.000 6 0.000 5 0.000 15 0.000 1 1.000 1 0.000 9 0.000 10 0.000 5 0.000 11 0.000 12 0.000 6 0.000 12 0.000 11 0.000 20 1.0 0.004 1.004
25525 T25525G|(ORF3a_protein:T133G(W45G)) 38 0.001 2 0.000 2 0.000 5 0.000 1 0.000 8 0.000 5 0.000 13 0.000 8 0.000 4 0.000 7 0.000 1 1.000 1 0.000 6 0.000 11 0.000 6 0.000 5 0.000 8 0.000 7 0.000 13 0.000 3 0.000 21 1.0 0.001 1.001
25547 T25547G|(ORF3a_protein:T155G(L52R)) 14 0.000 1 0.000 2 0.000 8 0.000 1 0.000 5 0.000 5 0.000 5 0.000 8 0.000 4 0.000 3 0.000 1 1.000 2 0.000 5 0.000 3 0.000 5 0.000 6 0.000 6 0.000 4 0.000 6 0.000 13 0.001 21 1.0 0.001 1.001
25563 G25563T|(ORF3a_protein:G171T(Q57H)) 30 0.001 3 0.000 6 0.000 10 0.000 2 0.000 8 0.000 14 0.000 2 0.000 6 0.000 3 0.000 7 0.000 1 1.000 8 0.000 11 0.000 11 0.000 14 0.000 5 0.000 11 0.000 13 0.000 16 0.001 20 1.0 0.002 1.002
25568 C25568A|(ORF3a_protein:C176A(A59D)) 13 0.000 1 0.000 1 0.000 7 0.000 2 0.000 2 0.000 3 0.000 2 0.000 1 0.000 5 0.000 1 1.000 2 0.000 4 0.000 3 0.000 3 0.000 7 0.000 1 0.000 3 0.000 2 0.000 3 0.000 20 1.0 0.0 1.0
25580 T25580A|(ORF3a_protein:T188A(I63K)) 58 0.001 4 0.000 8 0.000 20 0.000 3 0.000 15 0.001 15 0.000 22 0.001 12 0.000 8 0.000 16 0.000 1 1.000 1 0.000 7 0.000 10 0.000 14 0.000 17 0.000 16 0.000 20 0.000 20 0.000 16 0.001 21 1.001 0.003 1.0039999999999998
linked 25584 C25584T|(ORF3a_protein:C192T(T64T)) 52138 0.994 30045 0.998 52101 0.998 60659 0.999 10962 0.998 23342 0.997 35420 0.998 42021 0.998 38630 0.998 22015 0.997 45152 0.996 1 1.000 8754 0.997 32211 0.998 29651 0.998 42853 0.998 49676 0.998 48270 0.998 52704 0.998 62547 0.998 23318 0.993 21 3.9930000000000003 16.953999999999997 20.946999999999996
25591 A25591G|(ORF3a_protein:A199G(K67E)) 5 0.000 1 0.000 2 0.000 3 0.000 1 0.000 2 0.000 1 0.000 6 0.000 2 0.000 3 0.000 1 1.000 4 0.000 2 0.000 10 0.000 4 0.000 6 0.000 1 0.000 17 1.0 0.0 1.0
25604 T25604G|(ORF3a_protein:T212G(L71R)) 3 0.000 4 0.000 7 0.000 7 0.000 1 0.000 2 0.000 4 0.000 4 0.000 1 0.000 2 0.000 1 0.000 1 1.000 1 0.000 1 0.000 2 0.000 3 0.000 4 0.000 7 0.000 1 0.000 3 0.000 4 0.000 21 1.0 0.0 1.0
25606 G25606C|(ORF3a_protein:G214C(A72P)) 129 0.002 3 0.000 10 0.000 42 0.001 3 0.000 30 0.001 45 0.001 37 0.001 30 0.001 23 0.001 32 0.001 1 1.000 5 0.001 27 0.001 29 0.001 34 0.001 33 0.001 44 0.001 44 0.001 53 0.001 43 0.002 21 1.003 0.016000000000000004 1.019
25622 T25622G|(ORF3a_protein:T230G(V77G)) 38 0.001 2 0.000 2 0.000 18 0.000 3 0.000 11 0.000 10 0.000 13 0.000 8 0.000 11 0.000 11 0.000 1 1.000 3 0.000 11 0.000 11 0.000 7 0.000 14 0.000 20 0.000 14 0.000 17 0.000 15 0.001 21 1.0 0.002 1.002
25626 C25626G|(ORF3a_protein:C234G(H78Q)) 59 0.001 1 0.000 2 0.000 13 0.000 2 0.000 12 0.001 14 0.000 6 0.000 9 0.000 6 0.000 10 0.000 1 1.000 6 0.001 11 0.000 13 0.000 13 0.000 14 0.000 59 0.001 61 0.001 72 0.001 10 0.000 21 1.002 0.004 1.006
25657 A25657T|(ORF3a_protein:A265T(T89S)) 16 0.000 2 0.000 3 0.000 4 0.000 6 0.000 4 0.000 7 0.000 3 0.000 8 0.000 1 1.000 2 0.000 4 0.000 1 0.000 8 0.000 12 0.000 14 0.000 14 0.000 5 0.000 18 1.0 0.0 1.0
25677 G25677T|(ORF3a_protein:G285T(L95F)) 16 0.000 4 0.000 7 0.000 9 0.000 1 0.000 7 0.000 6 0.000 6 0.000 10 0.000 1 0.000 11 0.000 1 0.500 6 0.001 11 0.000 6 0.000 6 0.000 2 0.000 7 0.000 6 0.000 21 0.000 7 0.000 21 0.501 0.0 0.501
25680 C25680A|(ORF3a_protein:C288A(L96L)) 4 0.000 3 0.000 4 0.000 2 0.000 4 0.000 2 0.000 3 0.000 7 0.000 3 0.000 4 0.000 1 0.500 1 0.000 3 0.000 3 0.000 3 0.000 4 0.000 10 0.000 4 0.000 12 0.000 3 0.000 20 0.5 0.0 0.5
25681 G25681T|(ORF3a_protein:G289T(V97F)) 27 0.001 12 0.000 12 0.000 10 0.000 5 0.000 15 0.001 8 0.000 9 0.000 14 0.000 4 0.000 16 0.000 1 0.500 5 0.001 12 0.000 8 0.000 10 0.000 10 0.000 13 0.000 19 0.000 23 0.000 10 0.000 21 0.501 0.002 0.503
linked 25690 G25690T|(ORF3a_protein:G298T(G100C)) 17 0.000 3 0.000 9 0.000 4 0.000 3 0.000 8 0.000 15 0.000 5 0.000 8 0.000 2 0.000 6 0.000 1 0.000 1 0.000 5 0.000 5 0.000 8 0.000 6 0.000 11 0.000 11 0.000 20 0.000 10 0.000 21 0.0 0.0 0.0
linked 25693 C25693A|(ORF3a_protein:C301A(L101I)) 2 0.000 1 0.000 2 0.000 6 0.000 7 0.000 3 0.000 5 0.000 1 0.000 6 0.000 1 0.000 1 0.000 2 0.000 5 0.000 4 0.000 6 0.000 4 0.000 7 0.000 5 0.000 18 0.0 0.0 0.0
25698 A25698T|(ORF3a_protein:A306T(E102D)) 17 0.000 5 0.000 12 0.000 17 0.000 1 0.000 6 0.000 5 0.000 209 0.606 10 0.000 16 0.000 29 0.001 64 0.001 1 0.000 8 0.000 8 0.000 7 0.000 9 0.000 8 0.000 15 0.000 18 0.000 11 0.000 21 0.606 0.002 0.608
linked 25700 C25700G|(ORF3a_protein:C308G(A103G)) 45 0.001 1 0.002 1 0.000 12 0.000 16 0.000 25 0.000 10 0.001 24 0.001 27 0.001 13 0.000 11 0.000 10 0.000 18 0.000 2 0.001 4 0.000 18 0.001 14 0.000 15 0.000 18 0.000 83 0.002 78 0.002 73 0.001 18 0.001 23 0.002 0.012000000000000002 0.014000000000000002
linked 25703 C25703G|(ORF3a_protein:C311G(P104R)) 28 0.001 1 0.002 14 0.000 28 0.000 21 0.000 6 0.000 13 0.001 20 0.001 10 0.000 13 0.000 4 0.000 18 0.000 1 0.000 10 0.000 13 0.000 17 0.000 22 0.000 10 0.000 21 0.000 15 0.000 17 0.001 21 0.0 0.006 0.006
linked 25711 T25711A|(ORF3a_protein:T319A(Y107N)) 52 0.001 17 0.001 17 0.000 18 0.000 9 0.001 12 0.000 13 0.000 16 0.000 13 0.000 11 0.000 19 0.000 3 0.001 2 0.000 8 0.000 11 0.000 15 0.000 17 0.000 21 0.000 26 0.001 27 0.000 17 0.001 21 0.001 0.005 0.006
linked 25721 C25721A|(ORF3a_protein:C329A(A110D)) 4 0.000 1 0.000 1 0.000 4 0.000 2 0.000 3 0.000 3 0.000 2 0.001 1 0.000 2 0.000 3 0.000 1 0.000 3 0.000 5 0.000 2 0.000 9 0.000 7 0.000 17 0.001 0.0 0.001
linked 25742 G25742T|(ORF3a_protein:G350T(S117I)) 16 0.000 2 0.000 10 0.000 6 0.000 2 0.000 4 0.000 10 0.000 7 0.000 7 0.000 6 0.000 3 0.000 1 0.000 3 0.000 3 0.000 4 0.000 4 0.000 4 0.000 7 0.000 12 0.000 4 0.000 20 0.0 0.0 0.0
25852 T25852C|(ORF3a_protein:T460C(Y154H)) 2392 1.000 137 0.393 2608 0.997 3 2.39 0 2.39
25922 G25922A|(ORF3a_protein:G530A(S177N)) 2388 0.998 136 0.390 2589 0.999 3 2.387 0 2.387
25936 C25936G|(ORF3a_protein:C544G(H182D)) 1 0.002 2393 1.000 1 0.000 1 0.001 1 0.000 3 0.001 346 1.000 1 0.001 1 0.001 2591 1.000 1 0.001 11 3.0 0.007 3.007
26538 G26538T|(membrane_glycoprotein:G16T(G6C)) 3 0.000 1 0.001 20921 0.998 2 0.000 2 0.000 2 0.000 16 0.001 10 0.001 1563 0.996 2638 0.209 2 0.001 3 0.000 4 0.000 13847 0.440 4 0.000 1 0.001 6 0.001 1 0.001 5 0.001 19 2.643 0.008 2.651
26545 T26545C|(membrane_glycoprotein:T23C(I8T)) 1 0.000 1 0.000 2 0.000 3 0.000 1 0.000 1 0.000 5 0.001 4 0.000 13809 0.438 1 0.000 1 0.000 2 0.000 12 0.438 0.001 0.439
26549 C26549T|(membrane_glycoprotein:C27T(T9T)) 2 0.000 1 0.000 1 0.000 2 0.000 1566 0.998 2639 0.210 3 0.000 1 0.000 3 0.000 9 1.208 0.0 1.208
26565 A26565C|(membrane_glycoprotein:A43C(K15Q)) 1 0.000 1 0.001 1 0.000 1 0.000 4 0.000 4 0.000 1563 0.996 2625 0.208 1 0.000 4 0.001 4 0.001 2 0.000 1 0.000 2 0.000 1 0.000 15 1.204 0.003 1.2069999999999999
26566 A26566C|(membrane_glycoprotein:A44C(K15T)) 6 0.001 20903 0.998 4 0.000 3 0.000 1 0.000 4 0.000 4 0.000 4 0.000 1 0.000 5 0.001 6 0.001 13840 0.439 2 0.000 2 0.000 3 0.000 15 1.437 0.003 1.44
linkedubiq 26610 A26610G|(membrane_glycoprotein:A88G(T30A)) 6320 0.990 1167 0.997 20887 0.997 21431 0.494 31114 0.996 8924 0.996 7181 0.998 24077 0.998 16185 0.996 1548 0.999 12077 0.997 2176 0.989 7326 0.996 6462 0.993 9632 0.996 29227 0.998 11127 0.995 1466 0.993 1716 0.995 4908 0.998 8764 0.998 964 0.997 186 0.995 3542 0.995 8349 0.996 25 5.981 18.411 24.392000000000003
26625 C26625T|(membrane_glycoprotein:C103T(L35L)) 20935 0.999 1 0.000 2 0.000 1 0.000 1549 0.999 2550 0.132 12747 0.398 7 2.528 0.0 2.528
26639 T26639C|(membrane_glycoprotein:T117C(Y39Y)) 5 0.000 1 0.001 7729 0.270 3 0.000 2 0.000 2 0.000 1 0.000 2 0.000 1589 1.000 1 0.000 4 0.000 1 0.000 12778 0.399 1 0.000 2 0.000 15 1.669 0.001 1.67
27016 CTAAAGAAATCACTGTTG27016-27033del|(membrane_glycoprotein:CCTAAAGAAATCACTGTTGCT493-513CCTdel(PKEITVA165-171Pdel)) 3452 0.462 257 0.114 2 0.5760000000000001 0 0.5760000000000001
27056 TT27056-27057del|(membrane_glycoprotein:534-535del(178fs)) 3461 0.462 264 0.117 2 0.5790000000000001 0 0.5790000000000001
27078 C27078T|(membrane_glycoprotein:C556T(R186C)) 3463 0.462 1 0.000 2 0.000 265 0.117 1 0.000 1 0.000 1 0.000 1 0.000 8 0.5790000000000001 0.0 0.5790000000000001
27084 G27084A|(membrane_glycoprotein:G562A(A188T)) 1 0.000 1 0.000 3461 0.462 1 0.000 5 0.000 3 0.000 1 0.000 266 0.118 1 0.000 1 0.000 1 0.000 11 0.5800000000000001 0.0 0.5800000000000001
27092 CTCAGGTT27092-27099del|(membrane_glycoprotein:GACTCAGGTTTTGCTGCATAC568-588GATTCdel(DSGFAAY190-196Ddel;fs)) 3417 0.457 266 0.118 2 0.575 0 0.575
27102 GCTGCATA27102-27109del|(membrane_glycoprotein:GACTCAGGTTTTGCTGCATAC568-588GATTCdel(DSGFAAY190-196Ddel;fs)) 3417 0.457 266 0.118 2 0.575 0 0.575
27132 TATAAAT27132-27138del|(membrane_glycoprotein:610-616del(204fs)) 3460 0.462 1 0.462 0 0.462
27191 AGTGACAACAGATGTTTCATCTCGTTGACTTT27191-27222del|(membrane_glycoprotein:fs/Splicing/Termination_disrupted)|(ORF6_protein:Start_disrupted) 3460 0.462 266 0.117 2 0.5790000000000001 0 0.5790000000000001
27208 C27208T|(ORF6_protein:C7T(H3Y)) 5 0.000 1 0.000 1 0.000 1 0.000 1983 0.872 2 0.000 1 0.000 3 0.000 1 0.000 9 0.872 0.0 0.872
linked 27259 A27259C|(ORF6_protein:A58C(R20R)) 45259 0.993 37350 0.993 46951 0.998 54810 0.998 35928 0.998 50771 0.999 55712 0.990 41635 0.991 1 0.000 30363 0.989 5233 0.999 17736 0.998 20188 0.997 53812 0.998 77927 0.607 12855 0.979 11288 0.998 15842 0.997 42509 0.998 50749 0.998 69674 0.992 87940 0.989 67051 0.991 30027 0.997 24 3.566 18.921 22.487
27277 A27277G|(ORF6_protein:A76G(I26V)) 7 0.000 5 0.000 3861 0.527 4 0.000 6 0.000 3 0.000 5 0.000 5 0.000 1 0.000 7056 0.998 2 0.000 2 0.000 6 0.000 49853 0.389 5 0.000 4 0.000 2 0.000 5 0.000 9 0.000 8 0.000 2 0.000 21 1.9140000000000001 0.0 1.9140000000000001
27285 T27285G|(ORF6_protein:T84G(N28K)) 2 0.000 3863 0.527 1 0.000 1 0.000 3 0.000 1 0.000 6881 0.973 1 0.000 2 0.000 29376 0.229 1 0.000 4 0.000 3 0.000 1 0.000 14 1.729 0.0 1.729
27289 G27289A|(ORF6_protein:G88A(D30N)) 1 0.000 3865 0.527 2 0.000 2 0.000 3 0.000 2 0.000 7062 0.999 298 0.010 3 0.000 2 0.000 37020 0.289 1 0.000 2 0.000 1 0.000 1 0.000 2 0.000 16 1.8250000000000002 0.0 1.8250000000000002
27384 T27384C|(ORF6_protein:T183C(D61D)) 3 0.000 45 0.978 1 0.000 1 0.000 6948 0.998 43422 0.392 1 0.000 2 0.000 2 0.000 9 2.3680000000000003 0.0 2.3680000000000003
27398 A27398C|(ORF7a_protein:A5C(K2T)) 44 0.001 15 0.002 45 0.978 1 0.000 2 0.000 13 0.001 17 0.000 33 0.001 11 0.000 6944 0.997 9 0.000 1 0.000 5 0.000 7 0.001 12 0.000 16320 0.147 7 0.001 4 0.001 8 0.001 15 0.001 15 0.000 20 0.000 48 0.001 21 0.000 28 0.002 25 2.123 0.012000000000000002 2.1350000000000002
27421 RATG13 A27421G|(ORF7a_protein:A28G(I10V)) 1 0.000 2 0.000 45 0.978 2 0.000 1 0.000 2 0.000 5 0.000 1 0.000 3 0.000 6948 0.998 1 0.000 1 0.000 1 0.000 16307 0.147 1 0.000 1 0.000 1 0.000 31 0.001 46 0.001 41 0.001 1 0.000 21 2.1239999999999997 0.002 2.1259999999999994
27468 A27468G|(ORF7a_protein:A75G(R25R)) 3 0.000 3 0.000 45 0.978 2 0.000 2 0.000 1 0.000 4 0.000 3 0.000 2 0.000 6937 0.999 4 0.000 1 0.000 1 0.000 5 0.000 16300 0.147 1 0.000 4 0.000 6 0.000 15 0.000 6 0.000 1 0.000 21 2.1239999999999997 0.0 2.1239999999999997
27551 A27551G|(ORF7a_protein:A158G(K53R)) 6 0.000 1 0.000 43 0.915 17 0.000 10 0.000 1 0.000 1 0.000 3 0.000 1 0.000 4 0.000 1 0.000 3 0.000 3 0.000 11 0.000 1 0.000 1 0.000 6 0.000 4 0.000 2 0.000 3 0.000 20 0.915 0.0 0.915
27568 T27568A|(ORF7a_protein:T175A(F59I)) 8 0.000 1 0.000 30670 0.999 5 0.000 2 0.000 2 0.000 1 0.000 15 0.000 13 0.000 58594 0.702 4024 0.076 1 0.000 1 0.000 2 0.000 4 0.000 62192 0.448 1 0.000 2 0.000 4 0.000 9 0.000 3 0.000 3 0.000 8 0.000 23 2.225 0.0 2.225
27744 A27744G|(ORF7a_protein:A351G(K117K)) 5 0.000 1 0.000 3 0.000 7 0.000 5 0.000 4 0.000 1 0.000 3 0.000 3 0.000 12373 0.159 4245 0.123 2 0.000 5 0.000 3 0.000 20174 0.641 2 0.000 2 0.000 2 0.000 8 0.000 55 0.002 10 0.001 29 0.001 22 0.924 0.003 0.927
27886 A27886G|(ORF7b:A131G(*44*)) 10 0.000 3 0.000 38824 0.996 6 0.000 3 0.000 5 0.000 1 0.000 5 0.000 3 0.000 51838 0.660 4008 0.085 5 0.000 3 0.000 23621 0.584 3 0.000 4 0.000 3 0.000 8 0.000 3 0.000 4 0.000 1 0.000 2219 0.046 4 0.000 23 2.371 0.0 2.371
27889 C27889T 3 0.000 3 0.000 38928 0.999 3 0.000 2 0.000 4 0.000 52013 0.662 4020 0.085 1 0.000 1 0.000 23663 0.585 4 0.000 1 0.000 1 0.000 4 0.000 4 0.000 2220 0.046 17 2.3770000000000002 0.0 2.3770000000000002
27972 C27972T|(ORF8_protein:C79T(Q27*)) 4 0.000 3 0.000 8542 0.997 2 0.000 12 0.001 10 0.001 20 0.001 1 0.000 4010 0.401 1 0.000 2416 0.097 11 1.496 0.002 1.498
27984 T27984C|(ORF8_protein:T91C(Y31H)) 3 0.000 1 0.000 1 0.000 1 0.000 156 0.023 1646 0.998 1 0.000 1 0.000 1360 0.136 1 0.000 35 0.001 45 0.001 22 0.001 13 1.135 0.025 1.16
28048 G28048T|(ORF8_protein:G155T(R52I)) 47 0.001 16 0.001 8563 0.999 3 0.000 9 0.000 12 0.002 4 0.001 1 0.001 11 0.001 7 0.001 12 0.001 8 0.001 2 0.000 4022 0.402 7 0.001 5 0.000 17 0.001 4 0.001 3 0.000 13 0.000 17 0.000 2421 0.097 5 0.001 23 1.501 0.011 1.5119999999999998
28056 G28056A|(ORF8_protein:G163A(A55T)) 1 0.000 8557 0.998 1 0.000 2 0.000 2 0.000 1 0.000 1 0.000 1 0.000 1 0.000 1 0.000 1 0.000 3 0.000 2 0.000 1 0.000 14 0.998 0.0 0.998
28069 AATT28069-28072del|(ORF8_protein:176-179del(59fs)) 8561 0.998 4018 0.401 2406 0.096 3 1.495 0 1.495
28111 A28111G|(ORF8_protein:A218G(Y73C)) 2 0.000 1 0.000 8553 0.998 1 0.000 3997 0.405 1 0.000 1 0.000 1 0.000 1 0.000 2264 0.100 10 1.5030000000000001 0.0 1.5030000000000001
28271 Delta A28271-28271del 2 0.000 1 0.000 74886 0.999 2 0.000 2 0.000 6541 0.639 1 0.000 1 0.000 1 0.000 4939 0.145 1 0.000 1 0.000 3 0.000 13 1.783 0.0 1.783
28280 G28280-28280del|(nucleocapsid_phosphoprotein:GATAAT7-12CTAGAT(DN3-4LD)) 44875 0.599 3293 0.319 2 0.9179999999999999 0 0.9179999999999999
28280 G28280C|(nucleocapsid_phosphoprotein:GAT7-9CTA(D3L)) 29900 0.399 3330 0.323 1 0.000 4987 0.146 4 0.868 0.0 0.868
28281 A28281C|(nucleocapsid_phosphoprotein:GATAAT7-12CTAGAT(DN3-4LD)) 44875 0.599 3293 0.319 2 0.9179999999999999 0 0.9179999999999999
28281 A28281T|(nucleocapsid_phosphoprotein:GAT7-9CTA(D3L)) 29900 0.399 3330 0.323 1 0.000 4987 0.146 4 0.868 0.0 0.868
28282 T28282A|(nucleocapsid_phosphoprotein:GAT7-9CTA(D3L)) 29900 0.399 3330 0.323 1 0.000 4987 0.146 4 0.868 0.0 0.868
28284 28284-insertG|(nucleocapsid_phosphoprotein:GATAAT7-12CTAGAT(DN3-4LD)) 44875 0.599 3293 0.319 2 0.9179999999999999 0 0.9179999999999999
28315 C28315A|(nucleocapsid_phosphoprotein:C42A(R14R)) 28 0.000 28 0.000 29883 0.399 2 0.000 17 0.000 9 0.000 14 0.000 22 0.000 3331 0.322 8 0.000 4 0.000 8 0.000 8 0.000 18 0.000 7 0.000 4997 0.147 6 0.000 6 0.000 12 0.000 13 0.000 15 0.000 13 0.000 13 0.000 40 0.001 24 0.868 0.001 0.869
28382 RATG13 T28382C|(nucleocapsid_phosphoprotein:T109C(S37P)) 16 0.000 16 0.000 74872 0.999 3 0.000 7 0.000 7 0.000 9 0.000 8 0.000 8843 0.075 6653 0.643 1 0.000 2 0.000 2 0.000 12 0.000 3 0.000 7 0.000 4999 0.147 4 0.000 3 0.000 5 0.000 8 0.000 8 0.000 6 0.000 5 0.000 3 0.000 25 1.7890000000000001 0.075 1.864
28435 C28435A|(nucleocapsid_phosphoprotein:C162A(T54T)) 14 0.000 16 0.000 74511 0.997 1 0.000 4 0.000 9 0.000 8 0.000 15 0.000 10 0.000 6557 0.643 4 0.000 5 0.000 6 0.000 8 0.000 6 0.000 9 0.000 4927 0.147 8 0.000 8 0.000 11 0.000 11 0.000 34 0.000 16 0.000 14 0.000 10 0.000 25 1.787 0.0 1.787
28631 G28631T|(nucleocapsid_phosphoprotein:G358T(G120*)) 28 0.000 13 0.000 1 0.000 3 0.000 10 0.000 10 0.000 13 0.000 9 0.000 16411 0.501 7 0.000 4 0.000 3 0.000 5 0.000 9 0.000 18 0.000 1 0.000 7 0.000 6 0.000 3 0.000 7 0.000 14 0.000 14 0.000 11 0.000 4 0.000 24 0.501 0.0 0.501
28699 A28699T|(nucleocapsid_phosphoprotein:A426T(P142P)) 14 0.000 15 0.000 22981 0.999 3 0.000 10 0.000 7 0.000 4 0.000 16402 0.501 6 0.000 3 0.000 6 0.000 3 0.000 4 0.000 16169 0.161 2 0.000 3 0.000 4 0.000 4 0.000 3 0.000 15 0.000 25 0.000 13 0.000 7 0.000 23 1.661 0.0 1.661
28715 A28715G|(nucleocapsid_phosphoprotein:A442G(T148A)) 1 0.000 6 0.000 22970 0.999 3 0.000 1 0.000 5 0.000 6 0.000 1 0.000 3 0.000 16391 0.500 3955 0.109 3 0.000 1 0.000 8 0.000 17 0.000 30647 0.305 4 0.000 4 0.000 1 0.000 2 0.000 5 0.000 118 0.001 146 0.001 107 0.001 2 0.000 25 1.9140000000000001 0.002 1.9160000000000001
28727 G28727T|(nucleocapsid_phosphoprotein:G454T(A152S)) 16 0.000 13 0.000 1 0.000 4 0.000 17 0.000 16 0.000 10 0.000 16328 0.498 8 0.000 3 0.000 3 0.000 11 0.000 9 0.000 11 0.000 3 0.000 9 0.000 9 0.000 5 0.000 9 0.000 23 0.000 26 0.000 16 0.000 11 0.001 23 0.498 0.001 0.499
28791 C28791T|(nucleocapsid_phosphoprotein:C518T(A173V)) 1 0.000 22914 0.999 2 0.000 4 0.000 16309 0.501 1 0.000 1 0.000 2 0.000 1 0.000 15737 0.161 1 0.000 1 0.000 4 0.000 2 0.000 2 0.000 1 0.000 16 1.661 0.0 1.661
28857 G28857T|(nucleocapsid_phosphoprotein:G584T(R195I)) 1 0.000 1 0.000 16184 0.535 15 0.000 1 0.000 1 0.000 2 0.000 2 0.000 1 0.000 1 0.000 2 0.000 1 0.000 2 0.000 13 0.535 0.0 0.535
linkedubiq 28881 G28881A|(nucleocapsid_phosphoprotein:AGG607-609AAA(R203K)) 24795 0.996 18124 0.995 30237 0.997 45709 0.998 51416 0.998 43574 0.998 41145 0.997 39026 0.997 34382 0.997 938 0.997 16107 0.985 12504 0.985 10163 0.989 34281 0.990 24077 0.989 40291 0.989 17109 0.998 21754 0.997 17279 0.997 25601 0.997 32212 0.998 18323 0.997 7634 0.996 18108 0.998 23239 0.995 25 5.9639999999999995 18.906000000000002 24.87
linkedubiq 28882 G28882A|(nucleocapsid_phosphoprotein:AGG607-609AAA(R203K)) 24795 0.996 18124 0.995 30237 0.997 45709 0.998 51416 0.998 43574 0.998 41145 0.997 39026 0.997 34382 0.997 938 0.997 16107 0.985 12504 0.985 10163 0.989 34281 0.990 24077 0.989 40291 0.989 17109 0.998 21754 0.997 17279 0.997 25601 0.997 32212 0.998 18323 0.997 7634 0.996 18108 0.998 23239 0.995 25 5.9639999999999995 18.906000000000002 24.87
28883 G28883C|(nucleocapsid_phosphoprotein:GGA610-612CAA(G204Q)) 1 0.000 14074 0.464 1 0.000 2 0.000 1 0.000 1 0.000 1 0.000 2570 0.150 2 0.000 2 0.000 2 0.000 3 0.000 1 0.000 3 0.000 14 0.614 0.0 0.614
linked 28883 G28883C|(nucleocapsid_phosphoprotein:GGA610-612CCA(G204P)) 17 0.001 14 0.001 16200 0.534 24 0.001 27 0.001 13 0.000 18 0.000 23 0.001 15 0.000 8 0.000 2988 0.235 7 0.001 9 0.000 2215 0.091 3645 0.090 3 0.000 9 0.000 1030 0.059 2639 0.103 2486 0.077 1105 0.060 3 0.000 8 0.000 1215 0.052 24 0.624 0.6829999999999999 1.307
28884 G28884A|(nucleocapsid_phosphoprotein:GGA610-612CAA(G204Q)) 1 0.000 14074 0.464 1 0.000 2 0.000 1 0.000 1 0.000 1 0.000 2570 0.150 2 0.000 2 0.000 2 0.000 3 0.000 1 0.000 3 0.000 14 0.614 0.0 0.614
linked 28884 G28884C|(nucleocapsid_phosphoprotein:GGA610-612CCA(G204P)) 17 0.001 14 0.001 16200 0.534 24 0.001 27 0.001 13 0.000 18 0.000 23 0.001 15 0.000 8 0.000 2988 0.235 7 0.001 9 0.000 2215 0.091 3645 0.089 3 0.000 9 0.000 1030 0.059 2639 0.102 2486 0.077 1105 0.060 3 0.000 8 0.000 1215 0.052 24 0.623 0.6819999999999999 1.305
28976 TCT28976-28978del|(nucleocapsid_phosphoprotein:703-705del(S235del)) 30364 0.998 3722 0.090 2619 0.151 3 1.2389999999999999 0 1.2389999999999999
29509 C29509A|(nucleocapsid_phosphoprotein:C1236A(S412R)) 19 0.000 22 0.000 37729 0.424 18 0.000 17 0.000 32 0.000 34 0.000 16 0.000 13 0.000 158189 0.663 52368 0.455 7 0.000 9 0.000 14 0.000 16 0.000 60540 0.186 5 0.000 11 0.000 15 0.000 21 0.000 26 0.000 44 0.000 61 0.000 32 0.000 17 0.000 25 1.728 0.0 1.728
29649 A29649G|(ORF10_protein:A92G(D31G)) 4 0.000 3 0.000 37943 0.966 8 0.000 11 0.000 6 0.000 18 0.000 6 0.000 5 0.000 10405 0.188 4991 0.114 2 0.000 6 0.000 3 0.000 8 0.000 32681 0.212 3 0.000 1 0.000 1 0.000 12 0.000 15 0.000 6 0.000 6 0.000 9 0.000 6 0.000 25 1.48 0.0 1.48
29758 RATG13 T29758G 1 0.000 39134 0.997 1 0.000 14481 0.246 4842 0.115 32190 0.212 1129 0.030 1 0.000 8 1.6 0.0 1.6