IL-1 - Complete Raw Mutation Data

Full TSV data with all sample columns and abundance information
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Complete Mutations Data

This table shows the complete data from the mutations.tsv file exactly as it appears in the source. Scroll horizontally to see all columns.

SRR31920838(4724102) SRR31920860(4927907) SRR31920866(3981430) SRR31920867(4073872) SRR31920868(2125433) SRR31920890(2694577) SRR31920901(129253) SRR31920910(1414457) SRR31920924(1133387) SRR31920926(43673) SRR31920946(128554) SRR31920947(3363843) SRR31920949(1301281) SRR31920952(2505947) SRR31920953(3718435) SRR31920959(10220201) SRR31920962(3043191) SRR31921060(1518912) SRR31921071(5239733) SRR31921136(4657672) SRR31921166(3153533) SRR31921178(488060) SRR31921181(357465) SRR31921323(373645) SRR31921330(1776942) SRR31921340(110271) SRR31921342(1366944) SRR31921381(78313) SRR31921384(3294701) SRR31921401(1034123) SRR31921409(813048) SRR31921692(4178101) SRR31921708(9214602) SRR31921712(1953649) SRR31921713(3682078) SRR31921719(3802333) SRR31921737(1092808) SRR31921859(5186663) SRR31921860(246103) SRR31921869(1829503) SRR31921872(2165386) SRR31921906(265992) SRR31921916(356360) SRR31921920(159516) SRR31921921(1081507) SRR31921922(1798470) SRR31921924(2914549) SRR31921925(4186135) SRR31921926(4490136) SRR31921928(5788415) SRR31921941(81012) SRR31921942(1115006) SRR31922026(2938566) SRR31922117(11002287) SRR31922118(1533297) SRR31922119(3064619) SRR31922123(648447) SRR31922128(4020581) SRR31922129(3184265) SRR31922138(3154533) SRR31922143(3023012) SRR31922150(4078972) SRR31922154(3386400) SRR31922155(2224155) SRR31922158(2503968) SRR31922172(2530913) SRR31922178(4838833) SRR31922180(3388682) SRR31922292(1627541) SRR31922294(2375443) SRR31922381(2164735) SRR31922384(172074) SRR31922386(3161194) SRR31922387(7072810) SRR31922388(5844772) SRR31922392(3098229) SRR31922395(2544261) SRR31922402(6232478) SRR31922404(2694003) SRR31922493(5227624) SRR31922494(151615) SRR31922511(3491103) SRR31922516(5718561) SRR31922519(5977158) SRR31923011(825920) SRR31923016(3181105) SRR31923019(22038061) SRR31923050(428686) SRR31923066(181689) SRR31923068(2613683) SRR31923076(645031) SRR31923077(908292) SRR31923089(274710) SRR31923090(275332) SRR31923091(797893) SRR31923099(2747049) SRR31923102(316870) SRR31923105(1478668) SRR31923106(189182) SRR31923107(453467) SRR31923168(1126015) SRR31923174(3893966) SRR31923240(498032) SRR31923332(1219588) SRR31923333(2175317) SRR31923336(3697246) SRR31923337(2624366) SRR31923359(189207) SRR31923364(833549) SRR31923367(4436149) SRR31923371(625880) SRR31923377(3551311) SRR31923380(2844313) SRR31923383(1623202) SRR31923387(1324840) SRR31923388(252912) SRR31923434(1830992) SRR31923435(3065348) SRR31923436(828506) SRR31923441(1147012) SRR31923447(7881805) SRR31923452(2281234) SRR31923453(1611953) SRR31923463(4521329) SRR31923472(4023874) SRR31923510(2181270) SRR31923521(325512) SRR31923523(3550838) SRR31923526(10441505) SRR31923528(771717) SRR31923559(502150) SRR31923588(7844653) SRR31923624(83183) SRR31923653(631944) SRR31923680(632857) SRR31923681(208596) SRR31923688(174555) SRR31923690(143986) SRR31923698(147477) SRR31923700(675367) SRR31923728(70592)
('2022-06-07', '1127736') ('2022-06-05', '1127736') ('2022-06-01', '1134897') ('2022-06-06', '1134897') ('2022-06-02', '1127736') ('2022-05-18', '164781') ('2022-05-11', '164781') ('2022-05-16', '164781') ('2022-05-15', '353599') ('2022-05-10', '353599') ('2022-05-08', '1127736') ('2022-05-17', '1134897') ('2022-05-15', '1127736') ('2022-05-19', '1134897') ('2022-05-19', '1127736') ('2022-05-03', '1127736') ('2022-04-28', '1134897') ('2022-03-29', '1127736') ('2022-05-02', '164781') ('2022-04-20', '164781') ('2022-03-07', '164781') ('2022-03-02', '353599') ('2022-02-22', '353599') ('2022-02-07', '164781') ('2022-02-15', '1127736') ('2022-02-09', '164781') ('2022-02-13', '1134897') ('2022-02-16', '353599') ('2022-02-09', '353599') ('2022-02-02', '353599') ('2022-02-14', '353599') ('2022-06-08', '164781') ('2022-06-13', '164781') ('2022-06-06', '1127736') ('2022-06-05', '1134897') ('2022-06-01', '1127736') ('2022-06-07', '353599') ('2022-05-24', '353599') ('2022-05-08', '353599') ('2022-05-03', '353599') ('2022-05-22', '353599') ('2022-05-11', '1127736') ('2022-05-05', '1127736') ('2022-05-11', '1134897') ('2022-04-14', '1134897') ('2022-04-17', '1134897') ('2022-05-01', '1134897') ('2022-04-21', '1134897') ('2022-04-19', '1127736') ('2022-04-26', '1134897') ('2022-05-05', '1134897') ('2022-04-28', '1127736') ('2022-04-10', '1134897') ('2022-05-01', '353599') ('2022-05-17', '353599') ('2022-06-06', '164781') ('2022-05-09', '164781') ('2022-05-23', '164781') ('2022-05-25', '164781') ('2022-05-23', '1127736') ('2022-05-17', '1127736') ('2022-05-22', '1127736') ('2022-05-24', '1127736') ('2022-05-15', '1134897') ('2022-05-12', '1134897') ('2022-04-17', '1127736') ('2022-04-26', '1127736') ('2022-04-24', '1127736') ('2022-06-02', '1134897') ('2022-06-07', '1134897') ('2022-05-12', '1127736') ('2022-05-08', '1134897') ('2022-05-22', '1134897') ('2022-05-24', '1134897') ('2022-05-23', '1134897') ('2022-04-14', '1127736') ('2022-05-01', '1127736') ('2022-04-21', '1127736') ('2022-04-24', '1134897') ('2022-05-04', '164781') ('2022-03-20', '1127736') ('2022-04-12', '353599') ('2022-04-25', '164781') ('2022-04-13', '164781') ('2022-03-28', '164781') ('2022-04-06', '164781') ('2022-03-30', '164781') ('2022-03-08', '1134897') ('2022-03-01', '1134897') ('2022-02-21', '164781') ('2022-03-06', '1134897') ('2022-03-09', '164781') ('2022-02-28', '164781') ('2022-02-14', '164781') ('2022-02-23', '164781') ('2022-02-16', '164781') ('2022-02-22', '1127736') ('2022-03-06', '1127736') ('2022-02-27', '1134897') ('2022-03-21', '353599') ('2022-02-08', '1134897') ('2022-02-02', '164781') ('2022-02-07', '353599') ('2022-03-07', '353599') ('2022-04-24', '353599') ('2022-04-19', '353599') ('2022-04-26', '353599') ('2022-03-20', '1134897') ('2022-03-08', '353599') ('2022-04-12', '1127736') ('2022-03-29', '1134897') ('2022-04-03', '1127736') ('2022-04-05', '1127736') ('2022-04-03', '1134897') ('2022-04-05', '1134897') ('2022-03-22', '1134897') ('2022-03-23', '164781') ('2022-04-04', '164781') ('2022-03-21', '164781') ('2022-03-22', '1127736') ('2022-06-05', '353599') ('2022-04-17', '353599') ('2022-04-04', '353599') ('2022-04-18', '164781') ('2022-04-11', '164781') ('2022-04-11', '353599') ('2022-03-27', '1127736') ('2022-04-12', '1134897') ('2022-04-10', '1127736') ('2022-03-27', '1134897') ('2022-03-28', '353599') ('2022-04-27', '164781') ('2022-03-01', '1127736') ('2022-03-02', '164781') ('2022-03-08', '1127736') ('2022-02-21', '1134897') ('2022-02-27', '1127736') ('2022-02-21', '1127736') ('2022-02-28', '353599') ('2022-04-05', '353599') ('2022-02-06', '1134897')
Sequences Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Total samples Positives Sum Negatives Sum Total Sum
378 RATG13 T378C|(ORF1ab_polyprotein:T113C(V38A))|(ORF1a_polyprotein:T113C(V38A)) 5695 0.022 2763 0.018 3021 0.025 2168 0.006 761 0.465 49 0.001 133543 0.241 1128 0.007 286 0.049 966 0.004 18711 0.093 25920 0.071 9327 0.154 135857 0.089 41038 0.306 1711 0.164 12799 0.265 27044 0.134 9 0.003 1007 0.008 724 0.003 7296 0.022 10736 0.023 23 1.332 0.004 1.336
569 G569C|(ORF1ab_polyprotein:G304C(E102Q))|(ORF1a_polyprotein:G304C(E102Q)) 418 0.008 87 0.002 133 0.001 1882 0.013 10 0.001 929 0.381 45 0.001 14944 0.067 500 0.006 544 0.048 1867 0.026 1164 0.012 1043 0.010 2271 0.072 181 0.006 44824 0.083 12684 0.427 1309 0.484 932 0.383 7527 0.734 2159 0.029 2791 0.049 404 0.006 11 0.002 244 0.006 13 0.001 3 0.001 392 0.009 372 0.006 82 0.004 911 0.010 3623 0.017 2 0.001 38 0.004 34 2.366 0.017 2.383
733 T733C|(ORF1ab_polyprotein:T468C(D156D))|(ORF1a_polyprotein:T468C(D156D)) 9487 0.191 430 0.013 3087 0.032 1619 0.012 9032 0.532 2182 0.504 10305 0.052 991 0.012 698 0.052 1447 0.024 417 0.133 4557 0.051 447 0.015 13800 0.031 30913 0.680 3281 0.999 9897 0.863 525 0.008 5209 0.100 678 0.020 668 0.008 2175 0.068 1519 0.008 3 0.002 24 3.0100000000000002 0 3.0100000000000002
1135 G1135T|(ORF1ab_polyprotein:G870T(K290N))|(ORF1a_polyprotein:G870T(K290N)) 497 0.037 25 0.019 152 0.007 829 0.034 2852 0.203 1583 0.656 14 0.002 25 0.001 4 0.002 3 0.002 3979 0.289 3 0.001 92 0.012 144 0.035 2 0.002 583 0.039 385 0.017 306 0.506 7625 0.114 6793 0.747 40 0.421 3570 0.856 1666 0.061 5 0.002 28 0.002 4054 0.152 4 0.002 88 0.008 82 0.008 475 0.011 342 0.061 2 0.004 32 3.001 0.018000000000000002 3.0189999999999997
2749 C2749T|(ORF1ab_polyprotein:C2484T(D828D))|(ORF1a_polyprotein:C2484T(D828D)) 1525 0.029 802 0.018 32879 0.818 409 0.143 441 0.764 55 0.004 117264 0.326 14 0.007 2 0.002 178 0.002 263 0.047 1877 0.025 4779 0.058 3458 0.028 5982 0.132 289533 0.438 11081 0.456 7355 0.340 4341 0.736 15578 0.149 39209 0.395 564 0.017 423 0.006 12004 0.075 8616 0.973 8461 0.272 2 0.002 27 4.075 0.015 4.09
3335 GAAGTG3335-3340del|(ORF1ab_polyprotein:3070-3075del(EV1024-1025del))|(ORF1a_polyprotein:3070-3075del(EV1024-1025del)) 120 0.023 535 0.174 55 0.024 27 0.208 4487 0.099 30 0.013 1779 0.060 10145 0.333 7730 0.043 841 0.644 245 0.783 5671 0.266 303 0.048 352 0.135 14 2.3120000000000003 0 2.3120000000000003
3828 C3828T|(ORF1ab_polyprotein:C3563T(S1188L))|(ORF1a_polyprotein:C3563T(S1188L)) 34 0.019 59 0.013 167 0.172 412 0.293 356 0.091 25 0.018 40 0.022 14 0.004 31 0.004 26 0.004 176 0.098 483 0.021 383 0.440 55 0.655 38 0.974 260 0.148 595 0.178 18 0.006 41 0.060 5 0.002 40 0.006 21 2.596 0 2.596
5648 RATG13 A5648C|(ORF1ab_polyprotein:A5383C(K1795Q))|(ORF1a_polyprotein:A5383C(K1795Q)) 70 0.027 151 0.085 227 0.048 413 0.267 3270 0.542 64 0.033 82 0.031 224 0.049 3 0.002 388 0.073 387 0.084 2138 0.209 342 0.299 15 0.004 14199 0.515 3193 0.783 62 0.477 116 0.357 2150 0.554 5 0.004 2 0.005 5 0.004 5 0.003 14 0.005 384 0.091 642 0.076 8 0.004 27 3.534 0.015 3.549
6319 A6319G|(ORF1ab_polyprotein:A6054G(P2018P))|(ORF1a_polyprotein:A6054G(P2018P)) 13 0.157 321 0.206 2 0.065 89 0.359 51 0.022 13 0.068 275 0.062 18 0.085 8 0.078 13 0.112 2 0.026 172 0.662 23 0.187 3 0.429 55 0.917 78 0.394 4 0.010 17 2.9 0 2.9
6521 A6521C|(ORF1ab_polyprotein:A6256C(I2086L))|(ORF1a_polyprotein:A6256C(I2086L)) 27 0.001 27 0.001 25 0.001 52 0.017 89 0.003 20 0.001 66 0.001 3 0.001 314 0.118 6 0.003 69 0.251 88 0.013 84 0.003 3 0.011 53 0.217 21 0.002 31 0.689 10 0.011 18 1.293 0.05 1.343
6613 A6613G|(ORF1ab_polyprotein:A6348G(V2116V))|(ORF1a_polyprotein:A6348G(V2116V)) 25 0.015 14 0.023 10 0.001 1280 0.138 37 0.138 3 0.003 14 0.003 1992 0.207 16 0.041 118 0.031 3 0.002 19 0.007 206 0.049 498 0.064 2758 0.131 1459 0.853 4 0.002 7 0.004 80 0.661 754 0.454 6 0.002 25 0.003 5 0.002 813 0.492 25 0.009 13 0.006 19 0.003 383 0.053 258 0.996 399 0.232 30 3.997 0.025 4.022
6762 C6762T|(ORF1ab_polyprotein:C6497T(T2166I))|(ORF1a_polyprotein:C6497T(T2166I)) 25 0.006 29 0.016 1117 0.109 492 0.306 6 0.003 3061 0.215 22 0.024 223 0.043 47 0.017 38 0.007 42 0.006 541 0.068 202 0.016 531 0.039 324 0.022 5096 0.187 1579 0.857 76 0.628 585 0.371 3281 0.449 519 0.054 318 0.020 212 0.819 332 0.132 24 3.662 0.003 3.665
8133 A8133G|(ORF1ab_polyprotein:A7868G(N2623S))|(ORF1a_polyprotein:A7868G(N2623S)) 3 0.008 3249 0.508 221 0.099 264 0.055 244 0.105 157 0.048 331 0.058 126 0.724 5 0.001 611 0.313 163 0.823 134 0.469 1031 0.267 3 0.001 2 0.002 29 0.058 81 1.000 195 0.043 400 0.995 19 4.8 0.002 4.802
9204 A9204G|(ORF1ab_polyprotein:A8939G(D2980G))|(ORF1a_polyprotein:A8939G(D2980G)) 628 0.107 225 0.071 21 0.009 140 0.014 878 0.315 8490 0.358 30 0.011 10 0.002 42 0.002 1420 0.219 12 0.002 48 0.003 25 0.004 57 0.004 13 0.002 277 0.022 1230 0.063 1261 0.053 833 0.289 7284 0.415 4751 0.813 44 1.000 699 0.382 133 0.137 1295 0.871 2307 0.514 43 0.007 13 0.002 493 0.160 322 0.997 255 0.018 3 0.007 9 0.012 29 0.013 471 0.026 35 5.771 0.04 5.811
11239 T11239C|(ORF1ab_polyprotein:T10974C(S3658S))|(ORF1a_polyprotein:T10974C(S3658S)) 275 0.009 2 0.002 157 0.029 425 0.339 6777 0.099 34 0.024 79 0.006 374 0.017 42 0.012 130 0.002 225 0.007 161 0.002 572 0.007 112 0.027 5086 0.021 2164 0.337 1487 0.594 315 0.319 1278 0.457 3780 0.108 268 0.007 122 0.007 261 0.036 263 0.007 116 0.008 50 0.005 1046 0.007 185 0.004 908 0.998 29 2.948 0.018000000000000002 2.9659999999999997
linked 11288 TCTGGTTTT11288-11296del|(ORF1ab_polyprotein:11023-11031del(SGF3675-3677del))|(ORF1a_polyprotein:11023-11031del(SGF3675-3677del)) 10063 0.998 5114 0.998 4600 0.998 5862 0.999 2478 0.931 3865 1.000 423 0.998 2457 0.998 3145 0.986 137 1.000 544 1.000 6400 0.999 2253 0.997 1623 0.999 3739 0.999 5999 0.999 1673 0.813 751 0.999 3091 0.997 7017 0.996 2417 0.311 414 0.421 439 0.520 7201 0.998 18910 0.999 5592 0.956 5974 0.999 6127 0.998 840 0.999 5031 0.999 770 0.997 1313 0.999 1294 0.952 773 0.999 1327 0.998 832 0.986 3829 0.954 5435 0.862 3783 0.998 3880 0.998 4933 0.976 4832 0.890 202 1.000 967 0.821 1823 0.995 10162 0.998 4448 0.999 4427 0.999 2055 0.997 3769 0.998 2227 0.998 2609 0.999 3507 0.999 3684 0.823 2178 0.868 2393 0.998 2442 0.999 1655 0.997 4870 0.998 1605 0.999 6094 0.998 6208 0.998 2284 1.000 334 0.997 3965 0.999 2627 1.000 2674 0.999 3865 0.993 2198 1.000 7222 0.997 2976 0.997 88 0.521 5307 0.851 4553 0.997 5352 0.999 185 0.415 1510 0.749 12079 0.999 2409 0.909 2339 0.997 1487 0.594 434 0.468 1149 0.918 2 0.003 185 0.093 4922 0.702 1065 0.909 6233 0.996 3409 0.999 1861 0.977 1535 0.961 941 0.958 1636 0.971 272 0.968 677 0.837 1536 0.802 584 0.977 734 0.485 9875 0.998 3748 0.997 6881 0.980 2687 0.997 139 1.000 1435 0.999 8096 0.998 4563 0.922 910 1.000 2 0.005 412 0.737 109 23.255 40.834 64.089
11544 TTA11544-11546del|(ORF1ab_polyprotein:TTTATG11278-11283TTGdel(FM3760-3761Ldel))|(ORF1a_polyprotein:TTTATG11278-11283TTGdel(FM3760-3761Ldel)) 22 0.052 24 0.008 995 0.113 627 0.450 5482 0.998 5 1.561 0 1.561
11550 G11550A|(ORF1ab_polyprotein:G11285A(C3762Y))|(ORF1a_polyprotein:G11285A(C3762Y)) 156 0.017 40 0.044 2266 0.795 2473 0.119 279 0.034 87 0.016 1189 0.046 2678 0.242 1071 0.351 1824 0.196 134 0.032 5482 0.540 12 1.407 0 1.407
12524 A12524G|(ORF1ab_polyprotein:A12259G(T4087A))|(ORF1a_polyprotein:A12259G(T4087A)) 497 0.064 107 0.032 951 0.255 6349 0.226 1211 0.097 602 0.028 377 0.015 10445 0.130 3597 0.405 188 0.176 592 0.208 4003 0.355 556 0.297 2804 0.166 2659 0.297 15 2.077 0 2.077
12778 C12778T|(ORF1ab_polyprotein:C12513T(Y4171Y))|(ORF1a_polyprotein:C12513T(Y4171Y)) 156 0.004 1249 0.040 667 0.028 2255 0.044 233 0.298 40538 0.402 55 0.059 3916 0.101 57 0.028 703 0.023 4667 0.109 327 0.034 172 0.009 101579 0.560 9293 0.476 2331 0.616 7 0.002 12088 0.994 22201 0.497 3814 0.437 3692 0.086 141 0.002 2008 0.294 23 4.116 0.004 4.119999999999999
13130 C13130A|(ORF1ab_polyprotein:C12865A(Q4289K))|(ORF1a_polyprotein:C12865A(Q4289K)) 22 0.001 5 0.001 152 0.029 2576 0.035 367 0.048 183 0.012 339 0.014 229 0.005 953 0.142 6816 0.062 16093 0.245 1978 0.365 3076 0.526 686 0.029 7 0.002 2735 0.037 4 0.001 17 1.412 0.032 1.444
13339 T13339A|(ORF1ab_polyprotein:T13074A(N4358K))|(ORF1a_polyprotein:T13074A(N4358K)) 1051 0.066 387 0.033 2 0.002 381 0.018 5 0.001 326 0.050 18907 0.359 3 0.002 23 0.002 4 0.002 3 0.002 9 0.001 79 0.002 2 0.003 53 0.004 192 0.029 120 0.004 81 0.002 48 0.004 152 0.007 2 0.001 5780 0.570 1384 0.212 355 0.298 5 0.002 6 0.002 5 0.001 3539 0.313 81 0.002 21 0.001 260 0.007 135 0.005 127 0.006 61 0.006 12 0.002 67 0.006 2 0.001 6 0.002 3 0.001 3030 0.139 44 0.007 41 1.569 0.045 1.6139999999999999
13339 T13339C|(ORF1ab_polyprotein:T13074C(N4358N))|(ORF1a_polyprotein:T13074C(N4358N)) 574 0.036 153 0.013 1006 0.028 4 0.001 1260 0.024 49 0.021 78 0.005 2623 0.098 2326 0.068 38286 0.247 1171 0.116 2087 0.857 5 0.002 637 0.022 64 0.001 15 1.409 0.003 1.412
13473 T13473G|(ORF1ab_polyprotein:T13209G(V4403V))|(ORF1a_polyprotein:T13208G(F4403C)) 387 0.437 5 0.002 5786 0.229 6 0.005 290 0.336 14 0.006 9 0.003 8 0.001 5 0.001 357 0.394 23 0.002 11 1.4120000000000001 0.004 1.4160000000000001
13860 RATG13 C13860T|(ORF1ab_polyprotein:C13596T(D4532D)) 491 0.113 895 0.303 1767 0.368 149 0.070 147 0.087 59 0.020 290 0.057 88 0.015 14 0.039 1938 0.215 1267 0.809 46 0.821 490 0.815 1231 0.566 142 0.104 191 0.350 23 0.006 187 0.031 445 0.390 220 0.234 20 4.452 0 4.452
17259 G17259T|(ORF1ab_polyprotein:G16995T(E5665D)) 2573 0.622 994 0.756 53 0.009 2514 0.762 2778 0.515 21 0.002 31463 0.945 17 0.010 2 0.002 2462 0.703 95 0.014 5 0.003 885 0.405 5 0.002 8287 0.640 4126 0.332 11531 0.768 20 0.068 28083 0.462 3902 0.633 2195 0.900 59 0.504 1609 0.337 5389 0.700 11591 0.413 348 0.043 10987 0.596 3891 0.637 68 0.020 2333 0.258 419 0.427 31 7.738 0.006 7.744000000000001
17489 A17489C|(ORF1ab_polyprotein:A17225C(E5742A)) 4935 0.049 2634 0.061 201 0.106 102 0.002 76403 0.220 107 0.113 7891 0.090 28 0.007 916 0.006 1541 0.008 9635 0.036 28265 0.138 113878 0.123 4587 0.163 152 0.051 4019 0.222 3316 0.450 270 0.002 1513 0.022 12190 0.369 518 0.005 1950 0.020 8327 0.028 23 1.637 0.002 1.639
17745 RATG13 C17745T|(ORF1ab_polyprotein:C17481T(N5827N)) 1011 0.067 385 0.067 287 0.087 695 0.479 5489 0.199 48 0.077 2 0.003 435 0.047 588 0.070 109 0.044 3304 0.064 3375 0.072 2893 0.046 865 0.074 5043 0.171 80311 0.398 2599 0.794 49 0.045 138 0.608 941 0.768 12434 0.477 764 0.061 1518 0.354 740 0.068 2710 0.051 930 0.403 26 4.454 0.003 4.457
19741 G19741A|(ORF1ab_polyprotein:G19477A(E6493K)) 311 0.016 73 0.032 2096 0.042 693 0.270 203 0.506 7813 0.249 648 0.067 71 0.021 523 0.020 3495 0.055 1747 0.031 2036 0.056 1398 0.250 487 0.018 52665 0.413 2930 0.677 761 0.360 136 0.464 94 0.326 1552 0.889 267 0.038 13095 0.322 618 0.081 894 0.046 7391 0.142 677 0.289 26 4.457 0 4.457
20874 T20874A|(ORF1ab_polyprotein:T20610A(A6870A)) 39 0.028 2 0.003 13460 0.081 8632 0.148 58689 0.202 23 0.003 222 0.080 112 0.903 3 0.001 7436 0.093 92 0.006 425 0.005 78 0.005 120 0.006 284 0.006 242 0.005 903 0.999 17 2.5260000000000002 0.017 2.543
21614 C21614T|(surface_glycoprotein:C52T(L18F)) 13 0.012 2 0.004 367 0.232 4 0.011 2 0.004 547 0.200 11 0.172 3 0.002 19 0.014 5 0.023 57 0.028 392 0.091 378 0.053 11 0.117 411 0.120 4690 0.313 421 0.639 250 0.996 48 0.038 531 0.605 62 0.021 92 0.009 22 3.002 0.006 3.0079999999999996
21621 C21621A|(surface_glycoprotein:C59A(T20N)) 3 0.001 14 0.013 2 0.004 4 0.001 367 0.232 4 0.011 438 0.160 11 0.172 8 0.002 6 0.001 2 0.002 8 0.006 5 0.023 8 0.001 13 0.002 58 0.028 7 0.002 394 0.092 374 0.053 11 0.117 417 0.123 4679 0.312 426 0.644 214 0.853 531 0.603 4 0.002 3 0.002 12 0.004 8 0.003 3 0.008 63 0.021 19 0.004 6 0.002 4 0.003 97 0.009 35 2.84 0.022 2.8619999999999997
21638 C21638T|(surface_glycoprotein:C76T(P26S)) 13 0.012 2 0.004 367 0.232 4 0.012 2 0.004 545 0.199 11 0.183 18 0.013 4 0.022 57 0.028 390 0.091 376 0.053 11 0.117 383 0.116 4681 0.312 480 0.728 247 0.984 515 0.585 62 0.021 92 0.009 20 3.016 0.004 3.02
21746 G21746A|(surface_glycoprotein:G184A(V62I)) 39 0.078 7 0.046 44 0.030 60 0.682 297 0.254 200 0.211 35 0.047 7 0.003 2 0.002 52 0.034 36 0.031 4 0.138 251 0.467 1319 0.450 34 0.466 93 0.853 53 0.453 35 0.660 364 0.955 5 0.011 33 0.635 8 0.013 155 0.957 23 6.125 0 6.125
21752 T21752A|(surface_glycoprotein:T190A(W64R)) 30 0.060 25 0.021 2 0.002 2 0.001 35 0.047 37 0.032 58 0.108 26 0.356 38 0.325 28 0.538 10 1.359 0.001 1.3599999999999999
linked 21765 TACATG21765-21770del|(surface_glycoprotein:ATACATGTC202-210ATCdel(IHV68-70Idel)) 3 0.333 5 0.833 30 0.625 7 0.412 173 0.213 1447 0.984 76 0.962 5 1.000 2 1.000 169 0.558 4 0.571 323 0.333 34 0.069 34 0.919 43 0.015 6 1.000 19 0.229 36 0.225 4 0.571 48 0.176 827 0.619 33 0.943 54 1.000 41 1.000 24 0.066 1301 0.995 3 1.000 5 0.417 33 1.000 3 1.000 8 0.276 565 0.991 32 6.522 7.055 13.577
21974 G21974T|(surface_glycoprotein:G412T(D138Y)) 488 0.091 70 0.051 4 0.001 36 0.006 49 0.092 244 0.053 18 0.353 14 0.005 3055 0.256 3 0.005 13 0.023 93 0.017 4 0.003 17 0.003 10 0.002 6 0.001 615 0.039 249 0.018 173 0.009 273 0.200 705 0.077 9950 0.404 2224 0.592 3 0.004 38 0.129 356 0.860 496 0.071 1454 0.236 2 0.002 17 0.002 7 0.002 5 0.001 48 0.019 17 0.001 120 0.120 5 0.001 87 0.010 144 0.035 27 0.001 525 0.425 40 3.252 0.017 3.2689999999999997
22036 A22036C|(surface_glycoprotein:A474C(R158S)) 470 0.091 39 0.031 34 0.066 248 0.056 2697 0.238 3 0.002 125 0.008 245 0.018 157 0.125 913 0.105 2002 0.084 1261 0.326 21 0.073 41 0.096 1341 0.213 2 0.002 31 0.014 104 0.100 67 0.009 145 0.037 560 0.432 21 1.64 0.002 1.642
22343 G22343A|(surface_glycoprotein:G781A(G261S)) 583 0.063 51 0.042 14 0.001 671 0.108 172 0.118 1879 0.131 4 0.002 188 0.127 3 0.001 295 0.071 22 0.002 333 0.009 3919 0.094 22706 0.348 596 0.206 169 0.187 192 0.025 113 0.012 69 0.106 206 0.025 555 0.013 71 0.855 22 1.88 0.003 1.8829999999999998
22812 A22812C|(surface_glycoprotein:A1250C(K417T)) 62 0.053 192 0.177 37 0.327 10 0.003 7 0.006 15 0.006 145 0.149 883 0.348 86 0.524 642 0.617 1934 0.555 2 0.008 42 0.857 5 0.003 2 0.048 17 0.006 2 0.007 97 0.114 7 0.146 20 0.037 21 0.045 119 0.097 392 0.101 100 0.083 86 0.038 55 0.404 70 0.018 3123 0.164 1363 0.518 27 0.519 174 0.369 241 0.087 1111 0.089 13 0.020 4 0.004 300 0.733 70 0.097 63 0.034 84 0.337 39 3.712 0.03 3.742
22907 T22907A|(surface_glycoprotein:T1345A(Y449N)) 13 0.002 196 0.048 61 0.127 2 0.001 4 0.001 158 0.021 882 0.128 355 0.138 643 0.375 3 0.001 8 0.002 2 0.006 3699 0.313 3 0.004 6 0.001 6 0.001 54 0.066 2 0.001 3 0.002 3 0.002 16 0.002 6 0.002 22 0.001 2 0.002 161 0.055 7 0.003 24 0.003 5 0.001 9 0.003 15 0.001 124 0.032 10 0.001 121 0.012 17 0.001 2107 0.084 3 0.001 854 0.056 786 0.054 184 0.139 159 0.017 8834 0.361 2 0.006 2267 0.763 749 0.722 29 0.453 568 0.885 240 0.059 2 0.005 5 0.004 3570 0.312 7 0.002 2 0.001 75 0.008 18 0.010 22 0.010 8 0.007 3 0.003 23 0.007 42 0.011 288 0.206 11 0.007 3 0.001 5 0.007 337 0.058 71 0.007 226 0.012 356 0.498 6 0.009 68 4.742 0.077 4.819
23012 RATG13 G23012A|(surface_glycoprotein:G1450A(E484K)) 174 0.045 83 0.174 111 0.049 259 0.276 6104 0.464 2 0.002 140 0.053 141 0.038 2118 0.087 1195 0.081 2929 0.213 193 0.148 254 0.023 8559 0.360 2680 0.829 763 0.806 61 0.824 779 1.000 1098 0.345 4078 0.397 257 0.205 330 0.062 391 0.036 445 0.025 277 0.572 25 6.013 0 6.013
linked 23063 A23063T|(surface_glycoprotein:A1501T(N501Y)) 10724 0.940 7460 0.999 2201 0.999 9240 0.921 2814 0.998 3869 0.998 569 1.000 475 0.998 579 0.998 170 1.000 340 1.000 4732 0.998 1356 0.999 3162 0.999 7332 0.999 43902 0.999 4454 0.999 2106 0.999 12192 1.000 6778 0.996 4563 0.999 170 0.994 2480 0.965 939 1.000 588 0.997 1858 0.998 5 1.000 3223 0.999 1970 0.899 294 1.000 6083 1.000 13145 0.999 679 0.999 4961 0.998 5397 0.999 428 1.000 5684 0.999 1240 0.996 4030 1.000 2885 1.000 932 0.991 2077 0.997 361 1.000 1290 0.971 996 0.995 10802 0.999 10035 0.998 3429 0.997 19231 0.999 489 0.996 1939 1.000 10160 0.999 16343 0.999 859 1.000 2712 1.000 3140 0.987 7861 0.999 8990 0.998 7662 1.000 5604 0.999 9632 1.000 8326 0.999 5117 0.999 3124 0.999 2616 0.997 9736 0.999 5737 0.998 4560 0.999 3732 0.999 736 0.995 6674 0.999 18690 1.000 9456 0.999 7695 0.997 9805 0.999 15058 0.999 24352 0.999 143 1.000 2380 0.999 14805 0.998 13759 0.998 1303 0.997 10676 0.980 23753 0.998 301 1.000 348 1.000 3167 0.979 946 0.999 74 1.000 488 1.000 765 0.982 3173 0.997 234 1.000 319 1.000 422 0.995 1105 0.999 7537 0.999 9569 0.932 7488 0.997 455 0.998 6002 0.999 3974 0.997 3943 0.998 162 1.000 118 1.000 8278 0.999 1382 0.996 10879 0.982 1973 0.979 2532 0.984 1016 0.986 862 1.000 3204 0.998 4313 0.984 1244 0.990 1572 0.997 16287 0.999 2427 0.998 361 0.981 5339 0.996 10971 0.999 153 0.981 12990 0.999 23258 0.986 438 0.998 344 1.000 17953 0.998 484 1.000 126 1.000 27 1.000 27 1.000 10 1.000 769 0.986 221 0.995 134 32.746 62.646 95.392
ubiq 23403 Delta A23403G|(surface_glycoprotein:A1841G(D614G)) 52426 0.998 119978 0.997 43843 0.998 33209 0.997 16273 0.997 27817 0.998 523 1.000 15898 0.998 10149 0.998 283 1.000 663 1.000 29711 0.998 9841 0.998 34207 0.998 40646 0.998 118945 0.998 26387 0.998 13098 0.999 49328 0.998 52596 0.997 64655 0.999 1876 0.993 6829 0.997 1675 0.997 9458 0.997 142 1.000 8262 0.997 641 0.998 19129 0.997 15842 0.991 8581 0.997 67865 0.998 116887 0.998 20619 0.997 39467 0.997 30247 0.997 10440 0.997 58401 0.999 1029 0.999 25662 0.999 22720 0.999 782 0.978 2571 0.999 482 0.881 11350 0.997 9002 0.997 27541 0.997 31691 0.997 52883 0.997 116400 0.997 333 0.994 10068 0.997 25943 0.998 110864 0.998 19187 0.998 38632 0.997 3461 0.997 44821 0.995 43679 0.999 47648 0.999 31532 0.999 41621 0.998 46827 0.999 39030 0.998 34552 0.875 17987 0.997 44561 0.997 32531 0.998 403 0.995 19194 0.997 18850 0.998 1172 1.000 51049 0.998 125340 0.998 48137 0.999 55200 0.997 34021 0.998 68114 0.997 25971 0.998 76825 0.998 1041 0.994 30855 0.998 52579 0.997 65017 0.998 10718 0.999 42785 0.961 226232 0.998 8247 0.998 5188 0.997 54898 0.993 11496 0.998 8367 0.998 5047 0.996 5546 0.998 9980 0.995 52061 0.998 555 0.991 25533 0.998 4958 0.997 511 0.994 22172 0.997 46647 0.991 2209 0.999 1591 0.999 30732 0.997 34487 0.997 33151 0.997 499 0.996 12841 0.998 103015 0.998 14553 0.998 50805 0.961 34059 0.962 16344 0.964 14238 0.993 32339 0.993 27209 0.965 10289 0.991 37771 0.992 61935 0.998 21557 0.997 16481 0.962 59576 0.996 68777 0.998 72547 0.998 4171 0.998 73900 0.998 233030 0.998 12216 0.998 452 1.000 90621 0.997 278 0.996 7596 0.995 2411 0.998 2974 0.997 2161 0.988 2702 0.993 3509 0.964 19 1.000 139 33.723 66.482 100.205
linked 23525 C23525T|(surface_glycoprotein:C1963T(H655Y)) 29402 0.999 100763 0.998 24225 0.998 26343 0.999 10382 0.998 22770 0.986 602 0.993 11010 0.983 8186 0.986 285 0.993 842 0.996 24893 0.987 7586 0.990 30550 0.999 32815 0.999 99502 0.999 24019 0.999 8160 0.766 45230 0.998 31283 0.947 38542 0.999 352 0.997 6855 0.999 2130 0.993 3173 0.836 342 0.988 2543 0.998 233 1.000 17775 0.998 10038 0.669 7069 0.998 49250 0.999 86487 0.999 14714 0.999 28890 0.999 22913 0.999 9308 0.998 46793 0.999 1305 0.987 22477 0.999 20122 0.999 1109 0.994 3205 0.992 648 0.991 6642 0.997 4627 0.995 25857 0.999 27291 0.996 34127 0.996 113208 0.995 322 0.994 8597 0.998 26120 0.999 91647 0.999 12270 0.989 29013 0.968 3985 0.992 37423 0.999 37896 0.999 35543 0.999 23971 0.937 36563 0.989 41363 0.999 34177 0.986 32848 0.989 14647 0.981 32250 0.995 25341 0.995 1594 0.998 18338 0.999 13375 0.981 1315 0.990 37042 0.999 115185 0.999 31319 0.998 42821 0.995 27413 0.999 59452 0.995 24809 0.996 71057 0.999 595 0.998 31868 0.999 42202 0.996 53555 0.999 8928 0.998 43494 0.973 164937 0.998 8360 0.999 3454 0.997 34474 0.999 9969 0.999 6311 0.999 3572 0.999 5308 0.998 8214 1.000 41786 0.998 74 0.147 16313 0.999 5012 0.999 403 0.995 22374 0.999 31818 0.878 2929 0.993 2744 0.999 25917 0.995 29220 0.996 27234 0.995 507 1.000 6601 0.999 93893 0.999 13283 0.998 60801 0.971 34304 0.973 334 0.960 12892 0.971 14415 0.998 30407 0.997 23781 0.971 9331 0.999 37451 0.998 43423 0.999 9843 0.996 6596 0.366 43066 0.995 60343 0.999 73243 0.999 3861 0.998 69183 0.999 212801 0.969 7890 0.999 526 0.717 77213 0.996 28 0.609 4400 0.999 2456 0.998 1801 0.998 748 1.000 966 1.000 3123 0.969 54 1.000 140 32.443 66.442 98.88499999999999
23625 C23625T|(surface_glycoprotein:C2063T(A688V)) 109 0.051 807 0.421 130 0.102 48 0.172 186 0.048 1914 0.324 18 0.032 105 0.085 5 0.002 52 0.034 75 0.042 315 0.038 221 0.045 271 0.993 2550 0.503 1225 0.530 20 0.144 211 0.917 808 0.287 237 0.427 162 0.060 252 0.290 699 0.111 84 0.183 24 4.57 0 4.57
23765 T23765A|(surface_glycoprotein:T2203A(S735T)) 666 0.979 436 0.998 2 0.004 9697 0.997 839 0.632 44 0.089 11 0.006 31630 0.997 59 0.130 4 0.003 964 0.888 4 0.003 3 0.003 2 0.001 20435 0.994 3215 0.992 62 0.024 96057 0.995 7692 0.977 3855 0.997 246 0.996 4011 0.978 12781 0.582 2 0.012 1000 0.987 2228 0.985 5875 0.986 27 10.506 0.009000000000000001 10.515
23782 G23782C|(surface_glycoprotein:G2220C(M740I)) 2 1.000 25 0.010 2023 0.257 8 0.032 1030 0.251 23 0.001 2 0.002 2 0.024 31 0.031 3 0.001 6 0.001 2 1.000 12 2.608 0.002 2.61
24197 G24197A|(surface_glycoprotein:G2635A(A879T)) 625 0.021 330 0.012 514 0.007 72 0.104 2276 0.110 59 0.003 27006 0.285 16 0.085 2335 0.065 13 0.040 407 0.009 3959 0.065 2672 0.039 1735 0.192 2247 0.052 101331 0.235 4837 0.460 996 0.376 1495 0.748 4538 0.074 9323 0.304 4046 0.418 1784 0.046 2002 0.024 8 0.001 5688 0.060 1731 0.181 27 3.274 0.004 3.278
24642 C24642T|(surface_glycoprotein:C3080T(T1027I)) 294 0.036 68 0.053 689 0.057 1329 0.231 778 0.301 1300 0.470 6679 0.506 26 0.035 662 0.132 62 0.023 239 0.034 3 0.003 2444 0.131 770 0.069 654 0.062 294 0.821 402 0.075 17704 0.578 2 0.001 3145 0.526 573 0.151 51 0.241 1464 0.901 3117 0.523 1036 0.514 221 0.037 817 0.194 668 0.037 1198 0.567 549 0.175 30 5.602 0.004 5.606
24872 G24872T|(surface_glycoprotein:G3310T(V1104L)) 677 0.024 609 0.052 121 0.051 50 0.001 26 0.001 12044 0.358 19 0.024 347 0.041 21 0.008 60 0.004 13 0.001 1705 0.045 2 0.001 1529 0.051 100 0.070 442 0.024 28822 0.255 2 0.007 1127 0.103 56 0.059 3 0.007 22 0.001 5 0.001 627 0.051 19 0.001 202 0.427 44 0.003 2750 0.137 2355 0.047 13 0.002 30 1.283 0.009000000000000001 1.2919999999999998
25088 G25088T|(surface_glycoprotein:G3526T(V1176F)) 370 0.961 9 1.000 821 0.992 766 0.456 3 0.007 2895 0.999 4 0.006 88 0.140 5 0.004 95 1.000 3 0.002 660 0.832 477 0.973 497 1.000 6753 0.988 1423 0.947 42 1.000 568 0.930 3308 0.978 4 0.002 187 0.899 170 0.966 599 0.998 883 0.943 385 0.997 25 12.451 0.008 12.459
25103 A25103G|(surface_glycoprotein:A3541G(K1181E)) 368 0.956 9 1.000 820 0.990 763 0.455 2892 0.998 2 0.003 86 0.137 2 0.004 95 1.000 660 0.832 473 0.965 495 0.996 6749 0.988 1487 0.987 41 0.976 604 0.987 3236 0.949 185 0.889 170 0.960 598 0.997 875 0.933 383 0.992 22 12.451 0.007 12.458
25420 RATG13 A25420C|(ORF3a_protein:A28C(I10L)) 1882 0.077 361 0.043 945 0.018 9 0.006 41 0.003 16970 0.317 53 0.018 1586 0.105 9 0.001 4927 0.100 58 0.002 35736 0.150 1929 0.465 657 0.663 15 0.032 43 0.002 1262 0.154 7 0.005 3 0.001 40 0.002 5713 0.086 10031 0.143 57 0.088 2 0.004 9 0.015 25 1.907 0.014 1.921
linked 25936 C25936G|(ORF3a_protein:C544G(H182D)) 1135 0.030 478 0.021 133 0.178 14 0.136 495 0.009 24925 0.225 1919 0.049 34 0.012 3031 0.027 2447 0.029 5641 0.046 2958 0.959 150 0.005 136448 0.347 15078 0.559 3782 0.740 1114 0.463 5483 0.775 4841 0.152 588 0.005 67 0.005 123 0.005 145 0.005 1762 0.068 638 0.005 182 0.005 8934 0.085 40426 0.541 14257 0.091 4134 0.606 76 0.005 31 4.967 0.561 5.528
25961 C25961T|(ORF3a_protein:C569T(T190I)) 1137 0.030 474 0.021 133 0.178 14 0.136 19 0.001 18937 0.171 1915 0.049 34 0.012 2480 0.022 2430 0.029 5643 0.046 2940 0.953 98661 0.251 15317 0.567 3784 0.741 1118 0.464 5569 0.787 4826 0.152 1763 0.068 8166 0.078 14233 0.091 4142 0.607 22 4.856 0.001 4.857
26149 T26149C|(ORF3a_protein:T757C(S253P)) 62 0.073 2 0.001 3 0.013 2 0.001 1502 0.272 50 0.086 1055 0.428 57 0.019 91 0.020 109 0.069 58 0.007 2 0.002 180 0.098 111 0.083 289 0.161 143 0.540 3545 0.568 316 0.289 120 0.083 22 0.185 124 0.530 66 0.074 102 0.200 649 0.213 169 0.416 25 3.44 0 3.44
26158 GTTAATCCAGTA26158-26169del|(ORF3a_protein:766-777del(VNPV256-259del)) 1268 0.229 50 0.086 56 0.019 50 0.006 147 1.000 2610 0.553 364 0.364 121 1.000 24 0.231 144 0.615 66 0.132 53 0.134 87 0.061 80 0.242 14 4.332 0 4.332
26527 C26527A|(membrane_glycoprotein:C5A(A2E)) 4 0.006 157 0.646 1489 0.235 103 0.472 1558 0.751 382 0.216 79 0.104 344 0.344 606 0.546 11 0.019 10 1.98 0 1.98
26527 C26527T|(membrane_glycoprotein:C5T(A2V)) 2 0.001 16 0.003 42 0.129 2867 0.796 16 0.889 453 0.017 3 0.002 7 1.704 0.001 1.7049999999999998
28167 G28167A|(ORF8_protein:G274A(E92K)) 22 0.029 5 0.011 413 0.080 680 0.552 207 0.517 144 0.258 2488 0.522 2 0.002 289 0.103 31 0.013 32 0.038 50 0.074 142 0.135 141 0.088 209 0.601 253 0.268 885 0.154 2448 0.781 598 0.274 191 0.424 598 0.990 87 0.170 3 0.002 11 0.073 2 0.001 33 0.375 519 0.109 75 0.036 644 0.997 2 0.004 30 5.556 0 5.556
28263 28263-insertAACA 6367 0.039 2257 0.037 676 0.817 10333 0.030 193 0.080 74265 0.166 2834 0.017 66 0.037 71615 0.176 11856 0.036 15420 0.039 25967 0.250 144448 0.119 461 0.007 10679 0.873 140 0.039 353 0.016 10509 0.059 992 0.011 3494 0.059 34167 0.080 8546 0.015 595 0.024 23 1.803 0 1.803
linked 28271 A28271G 6653 0.041 2372 0.038 1473 0.061 679 0.837 10871 0.031 207 0.086 186 0.002 77195 0.172 3001 0.018 67 0.037 73224 0.180 52 0.009 12506 0.038 16071 0.041 46978 0.397 156962 0.129 242 0.043 28067 0.409 12232 0.991 866 0.241 17669 0.703 758 0.140 87 0.013 12261 0.068 330 0.011 177 0.001 138 0.001 183 0.001 91 0.001 129 0.010 7035 0.077 370 0.001 18740 0.307 863 0.008 202 0.001 35687 0.084 9055 0.016 4 0.071 4474 0.181 2196 0.132 603 0.049 907 0.129 87 0.061 84 0.001 44 4.271 0.337 4.608
28382 RATG13 T28382C|(nucleocapsid_phosphoprotein:T109C(S37P)) 7847 0.041 3271 0.038 15438 0.106 372 0.185 11122 0.031 451 0.107 1991 0.030 140221 0.237 8083 0.040 240 0.025 416 0.002 81842 0.175 7 0.001 13162 0.035 15975 0.035 3033 0.089 47052 0.359 233004 0.178 124 0.003 27022 0.397 22 0.003 17361 0.733 731 0.191 623 0.021 16136 0.681 51 0.001 19645 0.099 94 0.002 33 0.001 95 0.002 15 0.001 6640 0.075 18118 0.303 2625 0.009 35564 0.078 12172 0.018 6580 0.255 37 3.733 0.041999999999999996 3.775
linked 28512 C28512G|(nucleocapsid_phosphoprotein:C239G(P80R)) 5851 0.066 2084 0.042 75 0.002 188 0.002 53 0.001 163 0.001 25519 0.227 286 0.047 23 0.005 431 0.241 8198 0.081 559 0.265 66 0.001 59 0.002 111456 0.370 68 0.001 85 0.001 240 0.002 254 0.001 66 0.002 12184 0.125 151 0.019 429 0.004 230 0.002 94 0.002 150 0.002 159 0.001 136 0.002 229 0.002 82 0.001 33293 0.189 11 0.004 10530 0.066 7713 0.048 4063 0.242 13557 0.258 232380 0.534 50 0.003 104 0.024 42462 0.574 24 0.002 11676 0.540 63 0.034 636 0.070 15662 0.809 38 0.003 58 0.001 14107 0.174 95 0.001 27 0.003 52 0.002 812 0.013 315 0.011 509 0.013 280 0.024 33 0.006 1796 0.050 1176 0.020 7796 0.394 109 0.003 105 0.002 483 0.010 2828 0.017 8845 0.067 32 0.001 10155 0.040 2 0.001 4479 1.000 27 0.008 53 0.009 58 0.009 87 0.051 329 0.017 73 5.18 0.236 5.4159999999999995
ubiq 28881 G28881A|(nucleocapsid_phosphoprotein:AGG607-609AAA(R203K)) 281238 0.998 190746 0.998 530604 0.998 379540 0.998 194773 0.998 113158 0.938 231 0.971 144419 0.990 132394 0.991 33 1.000 326 0.997 208147 0.991 76371 0.992 136626 0.998 242103 0.998 353907 0.998 96925 0.998 59412 0.994 240065 0.998 261950 0.997 261608 0.961 53352 0.992 915 0.037 1003 0.998 231006 0.998 362 0.995 75975 0.632 13122 0.998 200754 0.998 62197 0.996 54222 0.998 286652 0.998 901697 0.999 236457 0.998 323136 0.999 180037 0.931 334817 0.999 448898 0.998 427 0.995 169363 0.998 169501 0.998 376 0.987 698 0.990 200 0.985 92200 0.997 92577 0.997 129107 0.998 96289 0.995 381935 0.925 491007 0.997 147 1.000 153610 0.998 260973 0.998 1028941 0.998 160814 0.991 296713 0.997 1219 0.983 273154 0.998 178448 0.998 193245 0.997 239192 0.991 211847 0.923 237205 0.998 151930 0.990 143561 0.990 437493 0.997 331198 0.992 233238 0.995 134051 0.999 209524 0.998 129798 0.990 394 0.990 223781 0.998 483420 0.998 433555 0.998 239796 0.997 124388 0.998 685634 0.975 119058 0.997 237012 0.998 6633 0.924 244283 0.999 202141 0.997 265639 0.999 86450 0.997 123243 0.971 599342 0.809 114864 0.999 31657 0.997 111016 0.998 19 1.000 106266 0.729 14527 0.996 13785 0.996 46540 0.998 65075 0.996 1071 0.984 113624 0.999 2092 0.974 2703 0.977 34354 0.997 169546 0.996 752 0.993 7010 0.991 149574 0.998 408228 0.997 177617 0.997 11652 0.996 50727 0.998 248665 0.998 30114 0.994 95023 0.963 115707 0.981 39906 0.960 106304 0.979 23922 0.998 75432 0.990 98716 0.976 29414 0.994 85524 0.996 420170 0.998 192114 0.866 95098 0.978 392062 0.997 158371 0.998 581722 0.999 40622 0.996 330048 0.816 563469 0.999 73150 0.998 27245 0.997 357387 0.996 595 0.975 23522 0.999 59206 0.999 7903 0.998 17745 0.998 22518 0.999 18331 0.997 44453 0.977 224 0.991 141 34.214 65.985 100.199
ubiq 28882 G28882A|(nucleocapsid_phosphoprotein:AGG607-609AAA(R203K)) 281238 0.998 190746 0.998 530604 0.998 379540 0.998 194773 0.998 113158 0.938 231 0.971 144419 0.990 132394 0.991 33 1.000 326 0.997 208147 0.991 76371 0.992 136626 0.998 242103 0.998 353907 0.998 96925 0.998 59412 0.994 240065 0.998 261950 0.997 261608 0.961 53352 0.992 915 0.037 1003 0.998 231006 0.998 362 0.995 75975 0.632 13122 0.998 200754 0.998 62197 0.996 54222 0.998 286652 0.998 901697 0.999 236457 0.998 323136 0.999 180037 0.931 334817 0.999 448898 0.998 427 0.995 169363 0.998 169501 0.998 376 0.987 698 0.990 200 0.985 92200 0.997 92577 0.997 129107 0.998 96289 0.995 381935 0.925 491007 0.997 147 1.000 153610 0.998 260973 0.998 1028941 0.998 160814 0.991 296713 0.997 1219 0.983 273154 0.998 178448 0.998 193245 0.997 239192 0.991 211847 0.923 237205 0.998 151930 0.990 143561 0.990 437493 0.997 331198 0.992 233238 0.995 134051 0.999 209524 0.998 129798 0.990 394 0.990 223781 0.998 483420 0.998 433555 0.998 239796 0.997 124388 0.998 685634 0.975 119058 0.997 237012 0.998 6633 0.924 244283 0.999 202141 0.997 265639 0.999 86450 0.997 123243 0.971 599342 0.809 114864 0.999 31657 0.997 111016 0.998 19 1.000 106266 0.729 14527 0.996 13785 0.996 46540 0.998 65075 0.996 1071 0.984 113624 0.999 2092 0.974 2703 0.977 34354 0.997 169546 0.996 752 0.993 7010 0.991 149574 0.998 408228 0.997 177617 0.997 11652 0.996 50727 0.998 248665 0.998 30114 0.994 95023 0.963 115707 0.981 39906 0.960 106304 0.979 23922 0.998 75432 0.990 98716 0.976 29414 0.994 85524 0.996 420170 0.998 192114 0.866 95098 0.978 392062 0.997 158371 0.998 581722 0.999 40622 0.996 330048 0.816 563469 0.999 73150 0.998 27245 0.997 357387 0.996 595 0.975 23522 0.999 59206 0.999 7903 0.998 17745 0.998 22518 0.999 18331 0.997 44453 0.977 224 0.991 141 34.214 65.985 100.199
ubiq 28883 G28883C|(nucleocapsid_phosphoprotein:G610C(G204R)) 281500 0.999 190932 0.999 531042 0.999 379973 0.999 194953 0.999 110274 0.914 238 1.000 141332 0.969 128740 0.964 33 1.000 326 0.997 209857 0.999 76920 0.999 136871 0.999 242395 0.999 354142 0.999 97025 0.999 59648 0.998 240229 0.999 262360 0.998 261925 0.962 53360 0.992 921 0.037 993 0.988 231198 0.999 341 0.937 76119 0.633 13131 0.999 200932 0.999 62183 0.994 54311 0.999 286922 0.999 614070 0.680 236653 0.998 323358 0.999 180186 0.932 335066 0.999 449396 0.999 428 0.998 169465 0.999 169742 0.999 380 0.997 702 0.996 201 0.990 92343 0.998 92659 0.998 129234 0.999 96616 0.998 382457 0.926 491707 0.999 146 0.993 153677 0.999 261147 0.999 1029472 0.999 162150 0.999 281978 0.948 1224 0.987 272997 0.998 170872 0.956 183534 0.947 241218 0.999 212616 0.926 237592 0.999 153301 0.999 144838 0.999 438008 0.998 327651 0.981 233520 0.996 134109 0.999 209712 0.999 129870 0.991 397 0.997 224096 0.999 484116 0.999 434198 0.999 240116 0.998 124495 0.999 686591 0.976 119233 0.999 189151 0.797 6663 0.927 244404 0.999 200912 0.991 265819 0.999 85323 0.984 122886 0.968 454028 0.613 114947 0.999 31699 0.998 97093 0.873 19 1.000 145768 0.999 13977 0.959 13824 0.999 46059 0.988 65237 0.998 1081 0.994 113670 0.999 2109 0.982 2752 0.995 34424 0.999 158327 0.928 756 0.999 7065 0.999 149704 0.999 408755 0.998 177963 0.999 11674 0.998 50816 0.999 248943 0.999 30216 0.998 97155 0.985 116564 0.988 40978 0.986 107301 0.988 23942 0.999 72420 0.950 99852 0.987 26678 0.902 85711 0.998 420564 0.999 192387 0.867 96061 0.988 392405 0.998 158481 0.999 581837 0.999 40746 0.999 330291 0.816 563797 0.999 73224 0.999 27286 0.998 347021 0.967 602 0.987 23526 0.999 59220 0.999 7912 0.999 17776 0.999 22529 0.999 18338 0.998 44904 0.987 225 0.996 141 33.745 66.146 99.89099999999999
29252 T29252A|(nucleocapsid_phosphoprotein:T979A(S327T)) 833 0.033 2 0.003 34 0.002 165 0.002 24 0.011 49 0.045 6866 0.070 460 0.010 3374 0.103 3 0.002 34 0.002 2688 0.127 52923 0.260 3 0.001 2804 0.110 871 0.211 5 0.002 1363 0.606 14 0.002 56 0.006 311 0.010 93 0.009 71 0.010 4 0.002 1357 0.138 191 0.010 42 0.007 18 0.002 45 0.005 49 0.001 578 0.016 9 0.002 3474 0.050 12 0.001 30 0.006 35 1.664 0.037 1.7009999999999998