IL-3 - Complete Raw Mutation Data

Full TSV data with all sample columns and abundance information
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Complete Mutations Data

This table shows the complete data from the mutations.tsv file exactly as it appears in the source. Scroll horizontally to see all columns.

SRR29902678(1156975) SRR29902697(416272) SRR29902698(463756) SRR29902969(288582) SRR29903047(64004) SRR29903100(3072486) SRR29903105(3242700) SRR29903107(2242610) SRR29903171(859002) SRR29903181(471695) SRR29903194(1621439) SRR29903614(186916) SRR29903651(992492) SRR29903873(1473093) SRR30351714(2087018) SRR30351717(534806) SRR30351719(881232) SRR30351730(2236483) SRR30351808(1513168)
('2024-06-16', '1134897') ('2024-06-18', '353599') ('2024-06-09', '353599') ('2022-09-20', '353599') ('2022-09-06', '353599') ('2022-10-18', '353599') ('2022-10-11', '353599') ('2022-10-05', '353599') ('2022-09-27', '353599') ('2022-09-25', '353599') ('2022-09-11', '353599') ('2022-09-18', '353599') ('2024-06-09', '1134897') ('2022-09-13', '353599') ('2024-07-09', '353599') ('2024-07-23', '353599') ('2024-07-01', '353599') ('2024-06-30', '1134897') ('2024-06-23', '1134897')
Sequences Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Total samples Positives Sum Negatives Sum Total Sum
linkedubiq 241 Delta C241T 37238 0.998 15727 0.999 31775 0.999 10914 0.986 4595 0.998 116887 0.999 128814 0.999 103939 1.000 39723 0.999 16912 0.999 81049 0.999 9793 0.948 13750 0.999 107132 0.999 79817 0.999 19984 1.000 45882 0.999 188077 0.999 55670 0.999 19 3.995 14.922 18.917
264 A264G 13595 0.362 47183 0.249 15019 0.268 3 0.879 0 0.879
405 A405G|(ORF1ab_polyprotein:A140G(K47R))|(ORF1a_polyprotein:A140G(K47R)) 17773 0.378 793 0.096 2828 0.015 1841 0.185 13178 0.264 23764 0.671 6 1.498 0.111 1.609
1577 G1577A|(ORF1ab_polyprotein:G1312A(V438I))|(ORF1a_polyprotein:G1312A(V438I)) 29586 0.591 7375 0.201 27571 0.606 13642 0.373 4 1.771 0 1.771
1613 C1613T|(ORF1ab_polyprotein:C1348T(L450F))|(ORF1a_polyprotein:C1348T(L450F)) 112 0.093 1263 0.177 1813 0.546 1816 0.558 4 1.374 0 1.374
2416 RATG13 C2416T|(ORF1ab_polyprotein:C2151T(Y717Y))|(ORF1a_polyprotein:C2151T(Y717Y)) 15776 0.567 21362 0.627 7891 0.334 3 1.528 0 1.528
linkedubiq 2790 C2790T|(ORF1ab_polyprotein:C2525T(T842I))|(ORF1a_polyprotein:C2525T(T842I)) 30912 0.989 10827 0.992 9598 0.995 1938 0.993 66984 0.988 117753 0.994 63111 0.996 17323 0.993 12576 0.991 37101 0.995 7791 0.995 33681 0.993 73636 0.996 32976 0.987 10826 0.998 70775 0.978 56458 0.982 19693 0.992 18 3.956 13.891 17.847
2841 C2841T|(ORF1ab_polyprotein:C2576T(A859V))|(ORF1a_polyprotein:C2576T(A859V)) 22067 0.717 1999 0.060 44295 0.818 19584 0.998 4 2.593 0 2.593
ubiq 3037 RATG13,Delta C3037T|(ORF1ab_polyprotein:C2772T(F924F))|(ORF1a_polyprotein:C2772T(F924F)) 31691 0.996 10795 0.996 4319 0.995 789 0.996 51401 0.993 63491 0.995 46691 0.998 5791 0.989 8289 0.987 24610 0.997 1657 0.994 22885 0.997 40610 0.996 10783 0.995 9266 0.998 35662 0.995 25394 0.995 4870 0.996 18 3.984 13.924 17.908
ubiq 4184 G4184A|(ORF1ab_polyprotein:G3919A(G1307S))|(ORF1a_polyprotein:G3919A(G1307S)) 2737 0.999 458 1.000 971 0.999 794 0.997 187 0.935 7724 0.999 1876 0.994 5890 1.000 1633 1.000 1157 1.000 4807 0.996 466 0.998 794 1.000 5205 0.994 3485 0.998 841 0.994 7433 1.000 6930 0.978 2938 1.000 19 3.977 14.904 18.881
ubiq 4321 C4321T|(ORF1ab_polyprotein:C4056T(A1352A))|(ORF1a_polyprotein:C4056T(A1352A)) 600 0.997 632 0.998 329 1.000 188 1.000 56 0.824 3719 0.995 2056 0.994 1900 0.998 482 0.986 595 0.998 2189 0.998 141 0.972 376 0.992 488 1.000 8588 0.998 846 0.999 1575 0.999 1607 0.988 1658 0.998 19 3.975 14.759 18.734
5920 T5920C|(ORF1ab_polyprotein:T5655C(D1885D))|(ORF1a_polyprotein:T5655C(D1885D)) 854 0.366 736 0.304 2 0.6699999999999999 0 0.6699999999999999
6040 C6040T|(ORF1ab_polyprotein:C5775T(F1925F))|(ORF1a_polyprotein:C5775T(F1925F)) 17 1.000 34 0.919 2 1.919 0 1.919
6108 A6108C|(ORF1ab_polyprotein:A5843C(K1948T))|(ORF1a_polyprotein:A5843C(K1948T)) 40 0.294 48 0.188 2 0.482 0 0.482
6272 T6272C|(ORF1ab_polyprotein:T6007C(Y2003H))|(ORF1a_polyprotein:T6007C(Y2003H)) 52 1.000 69 0.392 22 0.133 3 1.525 0 1.525
6751 C6751T|(ORF1ab_polyprotein:C6486T(N2162N))|(ORF1a_polyprotein:C6486T(N2162N)) 12 0.005 382 0.222 466 0.106 3 0.333 0 0.333
8090 C8090T|(ORF1ab_polyprotein:C7825T(L2609F))|(ORF1a_polyprotein:C7825T(L2609F)) 2886 0.303 42 0.023 12528 0.662 8493 0.993 4 1.981 0 1.981
8299 C8299T|(ORF1ab_polyprotein:C8034T(N2678N))|(ORF1a_polyprotein:C8034T(N2678N)) 3784 0.370 1850 0.997 2 1.367 0 1.367
8326 C8326T|(ORF1ab_polyprotein:C8061T(D2687D))|(ORF1a_polyprotein:C8061T(D2687D)) 764 0.124 9492 0.723 3286 0.662 3 1.509 0 1.509
8682 T8682C|(ORF1ab_polyprotein:T8417C(I2806T))|(ORF1a_polyprotein:T8417C(I2806T)) 168 0.043 409 0.519 5986 0.646 1822 0.305 4 1.5130000000000001 0 1.5130000000000001
9042 C9042T|(ORF1ab_polyprotein:C8777T(S2926F))|(ORF1a_polyprotein:C8777T(S2926F)) 945 0.165 852 0.382 10325 0.913 3837 0.529 4 1.989 0 1.989
ubiq 9344 C9344T|(ORF1ab_polyprotein:C9079T(L3027F))|(ORF1a_polyprotein:C9079T(L3027F)) 2127 1.000 1026 1.000 1169 0.998 192 1.000 87 1.000 5452 0.998 2326 0.990 3958 0.999 198 0.995 1081 0.999 2347 1.000 75 1.000 2158 0.999 1134 0.998 8573 0.999 296 1.000 671 1.000 2307 0.998 3948 0.999 19 3.996 14.975999999999999 18.971999999999998
ubiq 9534 C9534T|(ORF1ab_polyprotein:C9269T(T3090I))|(ORF1a_polyprotein:C9269T(T3090I)) 2990 0.997 1680 0.997 6631 0.997 469 0.998 156 1.000 14231 0.995 7222 0.996 4292 0.998 1777 0.997 2518 0.996 6273 0.991 551 0.995 4966 0.999 2993 0.989 15648 0.998 1518 0.995 395 1.000 7672 0.999 5673 0.998 19 3.993 14.942 18.935
9866 C9866T|(ORF1ab_polyprotein:C9601T(L3201F))|(ORF1a_polyprotein:C9601T(L3201F)) 122 0.072 8 0.021 41 0.009 139 0.047 9 0.010 587 0.318 2648 0.827 2900 0.747 8 1.964 0.087 2.051
linkedubiq 10029 C10029T|(ORF1ab_polyprotein:C9764T(T3255I))|(ORF1a_polyprotein:C9764T(T3255I)) 3538 0.996 3612 0.997 751 0.995 1057 0.999 304 0.997 13269 0.991 11554 0.996 10229 0.999 3952 0.998 3090 0.997 3185 0.996 762 0.996 6215 0.997 6948 0.995 14713 0.993 1817 0.992 3555 0.997 8955 0.997 4155 0.996 19 3.9859999999999998 14.938 18.924
10082 T10082A|(ORF1ab_polyprotein:T9817A(S3273T))|(ORF1a_polyprotein:T9817A(S3273T)) 419 0.185 5 0.003 7 0.009 11 0.002 9 0.001 4 0.009 8 0.002 1421 0.205 545 0.564 9 0.956 0.024 0.98
10195 A10195G|(ORF1ab_polyprotein:A9930G(E3310E))|(ORF1a_polyprotein:A9930G(E3310E)) 5 0.263 68 0.819 10 1.000 3 2.082 0 2.082
linkedubiq 10198 C10198T|(ORF1ab_polyprotein:C9933T(D3311D))|(ORF1a_polyprotein:C9933T(D3311D)) 57 1.000 14 1.000 7 1.000 13 1.000 69 0.972 18 1.000 82 0.976 26 1.000 20 1.000 5 1.000 19 1.000 22 1.000 579 0.997 8 1.000 62 0.984 83 1.000 10 1.000 17 4.0 12.929 16.929000000000002
ubiq 10447 RATG13 G10447A|(ORF1ab_polyprotein:G10182A(R3394R))|(ORF1a_polyprotein:G10182A(R3394R)) 6776 0.995 107 0.955 1208 0.997 948 0.989 244 0.988 11985 0.996 9003 0.995 9874 0.993 3739 0.996 1143 0.998 9663 0.998 703 0.999 3014 0.987 2768 0.886 30912 0.998 1153 0.995 3065 0.998 13238 0.996 4679 0.998 19 3.976 14.781 18.757
ubiq 10449 C10449A|(ORF1ab_polyprotein:C10184A(P3395H))|(ORF1a_polyprotein:C10184A(P3395H)) 6782 0.996 106 0.946 975 0.804 945 0.985 247 1.000 11971 0.995 8998 0.994 9873 0.993 3740 0.996 1142 0.997 9659 0.998 702 0.997 3021 0.990 2763 0.885 30893 0.998 1155 0.997 3065 0.998 13239 0.996 4681 0.998 19 3.98 14.583 18.563
ubiq 11288 TCTGGTTTT11288-11296del|(ORF1ab_polyprotein:11023-11031del(SGF3675-3677del))|(ORF1a_polyprotein:11023-11031del(SGF3675-3677del)) 1148 0.997 436 0.998 979 0.998 343 0.994 74 1.000 4506 0.997 2533 0.998 2533 0.998 1796 0.999 566 0.995 1182 1.000 232 0.991 1811 0.999 2019 0.999 1871 0.999 367 0.995 5047 0.998 412 1.000 18 3.9939999999999998 13.961 17.955
11460 C11460A|(ORF1ab_polyprotein:C11195A(S3732Y))|(ORF1a_polyprotein:C11195A(S3732Y)) 725 0.219 3 0.002 445 0.121 24 0.001 2171 0.550 922 0.333 6 1.223 0.003 1.226
12459 C12459T|(ORF1ab_polyprotein:C12194T(T4065I))|(ORF1a_polyprotein:C12194T(T4065I)) 2360 0.322 1345 0.282 4785 0.451 3 1.055 0 1.055
ubiq 12789 C12789T|(ORF1ab_polyprotein:C12524T(T4175I))|(ORF1a_polyprotein:C12524T(T4175I)) 8592 0.997 6392 0.995 7083 0.998 16 0.001 7547 0.993 19645 0.605 797 1.000 91 1.000 11376 0.977 25812 0.997 10 3.964 4.599 8.563
ubiq 12880 C12880T|(ORF1ab_polyprotein:C12615T(I4205I))|(ORF1a_polyprotein:C12615T(I4205I)) 507 0.988 135 0.978 172 1.000 65 1.000 23 0.958 1021 0.986 632 0.992 1166 0.996 325 0.994 92 1.000 511 0.859 41 1.000 164 0.994 133 0.993 1055 0.994 22 1.000 90 0.978 909 0.987 285 0.997 19 3.966 14.728 18.694
13752 T13752C|(ORF1ab_polyprotein:T13488C(F4496F)) 125 0.112 326 0.253 498 0.253 3 0.618 0 0.618
ubiq 14408 Delta C14408T|(ORF1ab_polyprotein:C14144T(P4715L)) 505 1.000 207 1.000 304 1.000 93 0.989 13 1.000 1111 0.996 1200 0.998 1202 0.999 439 0.980 100 0.990 638 1.000 24 0.960 1028 0.999 440 0.991 2923 0.999 274 0.996 15 1.000 660 0.966 1026 0.999 19 3.964 14.898 18.862
14922 C14922A|(ORF1ab_polyprotein:C14658A(I4886I)) 93 0.166 483 0.827 5 0.001 281 0.416 623 0.850 5 2.259 0.001 2.26
14937 C14937T|(ORF1ab_polyprotein:C14673T(D4891D)) 128 0.219 151 0.206 2 0.425 0 0.425
15451 G15451A|(ORF1ab_polyprotein:G15187A(G5063S)) 2731 0.331 1288 0.064 2068 0.399 3171 0.434 8789 0.950 5 2.114 0.064 2.178
linkedubiq 15714 RATG13 C15714T|(ORF1ab_polyprotein:C15450T(L5150L)) 1716 0.995 334 1.000 369 0.995 340 1.000 70 1.000 5314 0.992 1923 0.991 3047 0.996 722 0.996 490 0.998 1777 0.998 146 0.986 2816 0.996 1506 0.999 2374 0.998 414 0.995 308 1.000 2524 0.998 836 0.998 19 3.987 14.943999999999999 18.930999999999997
15738 C15738T|(ORF1ab_polyprotein:C15474T(F5158F)) 741 0.192 619 0.060 13 0.022 1293 0.299 3260 0.553 3581 0.999 6 2.043 0.08199999999999999 2.125
15939 T15939C|(ORF1ab_polyprotein:T15675C(D5225D)) 521 0.158 5 0.005 3 0.005 94 0.040 3284 0.581 2861 1.000 6 1.779 0.01 1.789
16064 A16064G|(ORF1ab_polyprotein:A15800G(Q5267R)) 1648 0.496 12 0.034 1515 0.555 3455 0.728 1874 0.999 5 2.778 0.034 2.812
16342 T16342C|(ORF1ab_polyprotein:T16078C(S5360P)) 537 0.147 46 0.008 368 0.158 2 0.001 717 0.105 1359 0.958 6 1.3679999999999999 0.009000000000000001 1.3769999999999998
16878 A16878T|(ORF1ab_polyprotein:A16614T(T5538T)) 13 0.005 30 0.005 11 0.005 100 0.019 32 1.000 5 1.029 0.005 1.0339999999999998
17859 T17859C|(ORF1ab_polyprotein:T17595C(Y5865Y)) 2426 0.412 19062 0.680 5744 0.599 3 1.691 0 1.691
18021 G18021A|(ORF1ab_polyprotein:G17757A(R5919R)) 2875 0.473 7151 0.604 15592 0.791 10480 0.728 4 2.596 0 2.596
linkedubiq 18163 A18163G|(ORF1ab_polyprotein:A17899G(I5967V)) 5670 0.995 7241 0.999 2342 0.999 1310 0.995 171 0.994 20129 0.999 23124 0.997 11212 0.989 7336 0.999 2138 0.953 8432 0.990 1534 0.999 11223 0.999 12874 0.998 6738 0.992 5877 0.997 1348 0.999 18796 0.999 14247 0.999 19 3.992 14.899 18.891
18924 A18924G|(ORF1ab_polyprotein:A18660G(E6220E)) 469 0.170 1588 0.332 1164 0.270 3 0.772 0 0.772
19282 G19282A|(ORF1ab_polyprotein:G19018A(D6340N)) 754 0.282 990 0.619 2 0.901 0 0.901
linked 19326 A19326G|(ORF1ab_polyprotein:A19062G(P6354P)) 1836 0.325 3594 0.957 232 0.071 1330 0.245 1466 0.555 1099 0.689 6 2.526 0.316 2.8419999999999996
linkedubiq 19955 C19955T|(ORF1ab_polyprotein:C19691T(T6564I)) 26420 0.993 18347 0.992 10158 0.997 4951 0.995 1313 0.998 95248 0.991 50799 0.996 48442 0.998 18115 0.996 10490 0.998 25795 0.998 6744 0.996 51753 0.997 24624 0.998 27371 0.995 7703 0.997 11684 0.995 41487 0.994 11438 0.995 19 3.979 14.94 18.919
19960 A19960C|(ORF1ab_polyprotein:A19696C(T6566P)) 9313 0.350 115 0.001 26454 0.509 22710 0.544 6789 0.590 5 1.9929999999999999 0.001 1.9939999999999998
linkedubiq 20055 A20055G|(ORF1ab_polyprotein:A19791G(E6597E)) 26400 0.998 18404 0.998 10186 0.999 4960 0.998 1307 0.995 94147 0.998 50692 0.999 48455 0.999 18165 0.999 10491 0.998 25958 0.998 6759 0.999 51798 0.999 24629 0.997 28244 0.999 7819 0.999 11539 0.998 40556 0.999 11644 0.999 19 3.995 14.973 18.968
20407 RATG13 T20407C|(ORF1ab_polyprotein:T20143C(F6715L)) 180 0.108 1580 0.320 677 0.210 32 0.006 4 0.644 0 0.644
ubiq 21618 C21618T|(surface_glycoprotein:C56T(T19I)) 1304 0.998 112 1.000 327 0.997 85 0.988 33 1.000 877 0.993 1780 0.996 904 0.999 705 0.999 434 1.000 1391 0.995 142 0.973 299 1.000 679 0.999 795 1.000 115 1.000 99 0.990 1898 0.932 1660 0.999 19 3.9290000000000003 14.929 18.858
ubiq 21633 TACCCCCTG21633-21641del|(surface_glycoprotein:TTACCCCCTGCA70-81TCAdel(LPPA24-27Sdel)) 1300 0.995 112 1.000 327 0.997 82 0.953 32 0.970 875 0.992 1777 0.995 904 0.999 702 0.996 431 0.995 1391 0.996 141 0.966 299 1.000 678 0.997 791 0.995 115 1.000 99 0.990 2026 0.995 1655 0.996 19 3.9859999999999998 14.841 18.826999999999998
linked 21765 TACATG21765-21770del|(surface_glycoprotein:ATACATGTC202-210ATCdel(IHV68-70Idel)) 181 1.000 224 1.000 10 1.000 11 1.000 4 1.000 333 1.000 1278 0.995 218 0.995 976 0.994 820 0.998 1098 0.931 11 2.9290000000000003 7.984 10.913
21810 T21810C|(surface_glycoprotein:T248C(V83A)) 41 0.139 62 0.061 540 0.214 906 0.301 4 0.715 0 0.715
ubiq 21987 G21987A|(surface_glycoprotein:G425A(G142D)) 1551 0.988 171 1.000 46 1.000 277 0.933 38 0.950 3779 0.924 3707 0.923 3665 0.939 1286 0.894 599 0.903 3064 0.932 268 0.915 2482 0.989 1492 0.914 2932 0.998 316 0.997 1250 0.995 7382 0.991 8137 0.986 19 3.9539999999999997 14.217 18.171
ubiq 21991 TTA21991-21993del|(surface_glycoprotein:GTTTAT427-432GTTdel(VY143-144Vdel)) 1540 0.981 171 1.000 46 1.000 5 0.001 144 0.037 127 0.088 104 0.032 2447 0.976 17 0.010 2933 0.999 316 0.997 1245 0.991 7182 0.965 7419 0.899 14 3.8209999999999997 5.155 8.975999999999999
22109 C22109G|(surface_glycoprotein:C547G(Q183E)) 1294 0.704 11 0.003 972 0.724 1833 0.611 1624 0.535 5 2.574 0.003 2.577
22200 T22200A|(surface_glycoprotein:T638A(V213E)) 1312 0.835 965 0.704 100 0.144 1820 0.705 1648 0.645 5 2.889 0.144 3.033
22317 G22317T|(surface_glycoprotein:G755T(G252V)) 3 0.003 3 0.001 80 0.141 44 0.011 236 0.209 5 0.364 0.001 0.365
ubiq 22577 G22577C|(surface_glycoprotein:GGT1015-1017CAT(G339H)) 21 1.000 12 1.000 40 0.976 396 1.000 8 1.000 16 1.000 34 0.872 124 0.992 8 3.84 4.0 7.84
ubiq 22578 G22578A|(surface_glycoprotein:GGT1015-1017CAT(G339H)) 21 1.000 12 1.000 40 0.976 396 1.000 8 1.000 16 1.000 34 0.872 124 0.992 8 3.84 4.0 7.84
linked 22599 RATG13 G22599C|(surface_glycoprotein:G1037C(R346T)) 6 0.231 2 0.167 31 0.738 139 0.088 6 0.048 18 1.000 36 1.000 74 0.583 8 2.552 1.303 3.855
22664 C22664A|(surface_glycoprotein:C1102A(L368I)) 7 0.269 10 0.238 35 0.972 54 0.425 4 1.904 0 1.904
linkedubiq 22674 C22674T|(surface_glycoprotein:C1112T(S371F)) 26 1.000 12 1.000 11 1.000 5 1.000 96 1.000 26 0.605 4 1.000 78 1.000 4 1.000 1572 0.996 42 1.000 4 1.000 1616 0.994 125 0.992 18 1.000 36 1.000 126 0.992 17 3.992 12.587 16.579
linkedubiq 22679 T22679C|(surface_glycoprotein:T1117C(S373P)) 26 1.000 12 1.000 11 1.000 5 1.000 96 0.990 25 0.581 4 1.000 78 1.000 4 1.000 1572 0.995 42 1.000 4 1.000 1617 0.995 125 0.992 18 1.000 36 1.000 127 1.000 17 4.0 12.553 16.553
linkedubiq 22688 A22688G|(surface_glycoprotein:A1126G(T376A)) 26 1.000 12 1.000 11 1.000 5 1.000 97 1.000 25 0.581 4 1.000 78 1.000 4 1.000 1576 0.997 42 1.000 4 1.000 1621 0.997 126 1.000 18 1.000 36 1.000 127 1.000 17 4.0 12.575 16.575
linkedubiq 22786 A22786C|(surface_glycoprotein:A1224C(R408S)) 171 1.000 6 1.000 6 1.000 19 1.000 6 1.000 221 0.995 37 0.673 71 1.000 107 1.000 23 1.000 1679 1.000 4 1.000 44 1.000 20 1.000 1767 0.999 136 1.000 35 1.000 381 0.997 232 0.991 19 3.988 14.667 18.655
linkedubiq 22813 G22813T|(surface_glycoprotein:G1251T(K417N)) 152 0.889 6 1.000 6 1.000 9 0.450 127 0.570 10 0.182 67 0.944 29 0.271 19 0.826 104 0.062 4 1.000 43 0.977 16 0.800 588 0.332 19 0.140 35 1.000 383 0.997 234 0.992 18 3.855 8.577 12.432
linkedubiq 22882 T22882G|(surface_glycoprotein:T1320G(N440K)) 17459 0.999 5688 0.998 1559 0.997 254 0.988 51 1.000 4357 0.967 5584 0.997 2617 1.000 1565 0.999 472 1.000 3745 0.999 182 0.995 3494 0.999 1359 0.998 14034 0.999 6817 0.998 5593 0.999 24209 0.998 14566 0.998 19 3.9939999999999998 14.934 18.927999999999997
22895 G22895C|(surface_glycoprotein:GTT1333-1335CCT(V445P)) 8923 0.511 3468 0.991 52 0.004 21888 0.903 4250 0.291 5 2.696 0.004 2.7
22896 T22896C|(surface_glycoprotein:GTT1333-1335CCT(V445P)) 8923 0.511 3468 0.991 52 0.004 21888 0.903 4250 0.291 5 2.696 0.004 2.7
linkedubiq 22898 G22898A|(surface_glycoprotein:G1336A(G446S)) 17420 0.997 5669 0.995 1561 0.999 3496 0.999 14022 0.999 6830 0.999 5588 0.998 24218 0.999 14556 0.998 9 3.993 4.99 8.983
22926 T22926G|(surface_glycoprotein:T1364G(L455W)) 4988 0.285 3 0.016 15233 0.628 2392 0.164 4 1.077 0.016 1.093
linkedubiq 22928 T22928C|(surface_glycoprotein:T1366C(F456L)) 17405 0.996 5679 0.997 1560 0.998 3482 0.995 14017 0.998 6828 0.998 5585 0.998 23452 0.967 14535 0.996 9 3.9539999999999997 4.989 8.943
22942 T22942G|(surface_glycoprotein:T1380G(N460K)) 8800 0.504 3459 0.989 21605 0.891 4098 0.281 4 2.665 0 2.665
linkedubiq 22992 G22992A|(surface_glycoprotein:G1430A(S477N)) 25473 0.997 6742 0.994 2796 0.998 242 0.957 50 1.000 4465 0.994 5644 0.997 2563 0.998 1557 0.999 461 0.998 3664 0.999 182 1.000 22315 0.994 1350 0.996 26562 0.998 10043 0.999 8518 0.998 28135 0.999 34265 0.993 19 3.983 14.925 18.908
22995 C22995G|(surface_glycoprotein:C1433G(T478R)) 10197 0.399 10062 0.448 22270 0.790 20191 0.585 4 2.222 0 2.222
23013 A23013T|(surface_glycoprotein:A1451T(E484V)) 1151 0.045 3252 0.119 7327 0.213 3 0.377 0 0.377
linkedubiq 23018 RATG13 T23018C|(surface_glycoprotein:TTT1456-1458CCT(F486P)) 25254 0.998 6632 0.998 2792 1.000 22430 0.999 26388 0.998 9896 0.994 8321 0.999 27361 0.998 34322 0.999 9 3.9939999999999998 4.989 8.983
linkedubiq 23019 T23019C|(surface_glycoprotein:TTT1456-1458CCT(F486P)) 25254 0.998 6632 0.998 2792 1.000 22430 0.999 26388 0.998 9896 0.994 8321 0.999 27361 0.998 34322 0.999 9 3.9939999999999998 4.989 8.983
23031 RATG13 T23031A|(surface_glycoprotein:T1469A(F490Y)) 6646 0.296 637 0.023 2 0.319 0 0.319
23031 T23031C|(surface_glycoprotein:T1469C(F490S)) 4937 0.195 8024 0.293 6878 0.200 3 0.688 0 0.688
linkedubiq 23055 A23055G|(surface_glycoprotein:A1493G(Q498R)) 25283 0.999 6642 1.000 2792 1.000 249 0.996 50 1.000 4384 0.998 5591 0.999 2557 0.999 1537 1.000 452 0.998 3643 0.999 181 1.000 22439 0.999 1346 1.000 26412 0.999 9952 0.999 8329 0.999 27395 0.999 34327 0.999 19 3.996 14.986 18.982
linkedubiq 23063 A23063T|(surface_glycoprotein:A1501T(N501Y)) 25205 0.996 5833 0.878 2787 0.998 250 1.000 50 1.000 4388 0.999 5585 0.998 2560 1.000 1535 0.999 453 1.000 3644 0.999 179 0.989 22387 0.997 1345 0.999 26388 0.998 9957 0.999 8315 0.998 27363 0.998 34259 0.997 19 3.988 14.854 18.842
23069 G23069A|(surface_glycoprotein:G1507A(V503I)) 10189 0.401 10144 0.450 21670 0.790 20629 0.597 4 2.238 0 2.238
23073 G23073A|(surface_glycoprotein:G1511A(G504D)) 5256 0.207 9231 0.409 5160 0.188 13731 0.397 4 1.201 0 1.201
linkedubiq 23075 RATG13 T23075C|(surface_glycoprotein:T1513C(Y505H)) 25360 0.998 6647 0.999 2798 0.999 250 1.000 50 1.000 4382 0.998 5588 0.998 2558 0.999 1534 0.998 452 0.998 3633 0.996 181 1.000 22549 0.999 1339 0.995 26487 0.999 9973 0.999 8349 0.999 27421 0.999 34520 0.999 19 3.995 14.977 18.972
23401 G23401T|(surface_glycoprotein:G1839T(Q613H)) 14234 0.544 10996 0.895 18156 0.995 9077 0.578 4 3.012 0 3.012
linkedubiq 23403 Delta A23403G|(surface_glycoprotein:A1841G(D614G)) 26106 0.997 8501 0.998 10984 0.997 2027 0.999 781 0.997 48834 0.948 43170 0.997 25574 0.999 8302 0.997 6274 0.997 25724 0.998 2775 1.000 12255 0.998 11974 0.998 18090 0.848 9088 0.998 11302 0.997 18202 0.998 15678 0.998 19 3.991 14.768 18.759
linkedubiq 23525 C23525T|(surface_glycoprotein:C1963T(H655Y)) 25321 0.996 8547 0.997 11142 0.997 1574 0.996 734 0.996 43472 0.998 36285 0.998 19522 0.999 6365 0.998 6289 0.999 22644 0.998 2483 0.994 11018 0.997 9106 0.999 22384 0.997 10003 0.999 11006 0.998 15081 0.997 13168 0.997 19 3.987 14.963 18.95
ubiq 23599 T23599G|(surface_glycoprotein:T2037G(N679K)) 132 0.992 98 0.990 84 1.000 19 1.000 915 0.972 462 0.994 1171 0.991 272 0.996 72 0.973 605 0.995 58 1.000 605 0.987 271 1.000 1003 0.982 865 0.998 219 0.995 2126 0.991 17 3.965 12.891 16.856
ubiq 23948 G23948T|(surface_glycoprotein:G2386T(D796Y)) 6061 0.991 1750 0.991 523 0.996 78 0.907 5504 0.970 9691 0.983 2789 0.994 2372 0.997 1824 0.992 8035 0.996 231 1.000 5364 0.992 689 0.996 4821 0.995 2450 0.997 158 0.988 6948 0.994 8272 0.991 18 3.968 13.802 17.77
24173 G24173T|(surface_glycoprotein:G2611T(A871S)) 2 0.001 2428 0.436 12 0.001 2420 0.113 3336 0.382 5 0.931 0.002 0.933
24389 A24389G|(surface_glycoprotein:A2827G(S943G)) 35 0.015 261 0.110 292 0.031 794 0.200 4 0.356 0 0.356
linked 24424 A24424T|(surface_glycoprotein:A2862T(Q954H)) 358 0.819 166 0.994 176 0.941 173 0.911 10 0.833 960 0.908 452 0.936 831 0.933 306 0.965 146 0.896 1034 0.966 74 0.974 815 0.998 239 0.972 1583 0.869 692 0.956 697 0.999 986 0.887 1022 0.822 19 3.526 14.053 17.579
24452 A24452G|(surface_glycoprotein:A2890G(K964E)) 93 0.213 39 0.048 327 0.294 3 0.5549999999999999 0 0.5549999999999999
linkedubiq 24469 T24469A|(surface_glycoprotein:T2907A(N969K)) 434 0.995 166 0.994 185 0.995 187 1.000 12 1.000 1051 0.996 482 0.998 889 1.000 314 1.000 162 1.000 1063 0.999 75 1.000 812 0.998 245 1.000 1811 0.999 724 1.000 675 1.000 1078 1.000 1231 0.998 19 3.991 14.981 18.972
25076 A25076G|(surface_glycoprotein:A3514G(I1172V)) 2195 0.613 3 0.002 4834 0.573 873 0.101 4 1.289 0 1.289
linked 25416 C25416T|(ORF3a_protein:C24T(F8F)) 4405 0.424 1995 0.057 1914 0.114 378 0.088 7985 0.759 13632 0.823 6 2.094 0.171 2.2649999999999997
25457 A25457G|(ORF3a_protein:A65G(D22G)) 5050 0.480 5624 0.340 2 0.8200000000000001 0 0.8200000000000001
25471 G25471C|(ORF3a_protein:G79C(D27H)) 4403 0.423 378 0.088 7980 0.758 13621 0.822 4 2.0909999999999997 0 2.0909999999999997
25494 G25494T|(ORF3a_protein:G102T(T34T)) 5 0.089 5 0.086 15 0.938 3 1.113 0 1.113
linkedubiq 25584 C25584T|(ORF3a_protein:C192T(T64T)) 2386 0.995 48 0.980 872 0.999 1723 0.985 364 0.995 20775 0.998 20581 0.997 11186 0.998 4259 0.957 3688 0.998 6857 0.983 607 0.981 1513 0.999 3842 0.984 8376 0.997 1480 0.996 150 0.993 14043 0.991 9781 0.997 19 3.982 14.841 18.823
25630 G25630C|(ORF3a_protein:G238C(V80L)) 269 0.111 734 0.483 7959 0.545 5157 0.522 4 1.661 0 1.661
25770 G25770A|(ORF3a_protein:G378A(R126R)) 2517 0.577 827 0.197 360 0.066 1271 0.324 4 1.164 0 1.164
25906 G25906A|(ORF3a_protein:G514A(G172S)) 10939 0.480 58 0.005 2788 0.110 3 0.59 0.005 0.595
26187 T26187A|(ORF3a_protein:T795A(D265E)) 6 1.000 21 0.112 2 1.112 0 1.112
linkedubiq 26270 C26270T|(envelope_protein:C26T(T9I)) 809 0.988 1079 0.978 374 0.989 308 0.802 94 0.969 2904 0.780 1723 0.846 1168 0.914 859 0.802 488 0.992 2526 0.963 247 0.984 681 0.994 1974 0.789 5096 0.998 250 1.000 2880 0.996 1493 0.994 1991 0.989 19 3.965 13.802 17.767
26275 A26275G|(envelope_protein:A31G(T11A)) 771 0.941 55 0.051 273 0.399 1067 0.710 1936 0.962 5 3.012 0.051 3.063
26315 T26315G|(envelope_protein:T71G(V24G)) 772 0.933 270 0.391 971 0.643 1857 0.913 4 2.88 0 2.88
26533 C26533T|(membrane_glycoprotein:C11T(S4F)) 4 1.000 5 1.000 2 2.0 0 2.0
linkedubiq 26709 G26709A|(membrane_glycoprotein:G187A(A63T)) 96 0.990 80 0.988 12 1.000 960 0.991 1168 0.988 270 0.989 254 0.992 107 1.000 980 0.994 30 1.000 417 0.995 153 0.994 7 0.875 4 1.000 990 0.988 1328 0.998 16 3.971 11.811 15.782
26753 RATG13 C26753T|(membrane_glycoprotein:C231T(T77T)) 136 0.207 225 0.179 802 0.415 3 0.8009999999999999 0 0.8009999999999999
ubiq 27259 A27259C|(ORF6_protein:A58C(R20R)) 145 0.980 105 1.000 38 0.023 49 0.049 27 0.060 9 0.031 8 0.005 166 1.000 366 0.931 207 1.000 37 0.841 1755 0.988 1638 0.999 13 3.967 3.94 7.907
ubiq 27807 C27807T|(ORF7b:C52T(L18L)) 2236 0.968 1171 0.947 1387 0.979 11 1.000 238 0.983 23 0.885 440 0.998 200 1.000 161 1.000 73 0.961 10 1.000 2150 0.970 22 0.880 6919 0.889 1180 0.962 1643 0.975 1662 0.928 2358 0.970 18 3.836 13.459 17.294999999999998
ubiq 28271 A28271T 47873 0.997 32300 0.998 3927 0.998 8912 0.988 4016 0.999 195589 0.999 165395 0.961 147436 0.999 60062 0.999 29027 0.999 135251 0.999 11886 0.987 8982 0.999 44510 0.999 44427 0.999 31013 0.999 24701 1.000 43873 1.000 49722 0.999 19 3.995 14.923 18.918
linkedubiq 28311 C28311T|(nucleocapsid_phosphoprotein:C38T(P13L)) 58972 0.974 39919 0.996 13694 0.997 12225 0.951 3444 0.728 127216 0.550 189132 0.982 171950 0.991 49560 0.715 35001 0.986 142202 0.923 14795 0.952 18369 0.997 52767 0.999 56861 0.904 34690 0.999 29334 0.998 54003 0.997 62966 0.992 19 3.96 13.671 17.631
28356 AGAATGG28356-28362del|(nucleocapsid_phosphoprotein:83-89del(28fs)) 2623 0.045 4981 0.271 6290 0.119 9309 0.148 4 0.583 0 0.583
28369 CA28369-28370del|(nucleocapsid_phosphoprotein:96-97del(32fs)) 2634 0.045 4997 0.272 6365 0.121 9348 0.149 4 0.587 0 0.587
28791 C28791T|(nucleocapsid_phosphoprotein:C518T(A173V)) 21326 0.411 90067 0.842 22710 0.323 3 1.576 0 1.576
linkedubiq 28881 G28881A|(nucleocapsid_phosphoprotein:AGG607-609AAA(R203K)) 53995 0.998 55944 0.998 20171 0.998 19304 0.911 4442 0.997 255698 0.998 214145 0.998 139441 0.999 45666 0.997 27840 0.998 77612 0.997 16417 0.992 59875 0.970 88120 0.998 104609 0.998 14153 0.998 11695 0.993 117386 0.998 90254 0.997 19 3.963 14.87 18.833
linkedubiq 28882 G28882A|(nucleocapsid_phosphoprotein:AGG607-609AAA(R203K)) 53995 0.998 55944 0.998 20171 0.998 19304 0.911 4442 0.997 255698 0.998 214145 0.998 139441 0.999 45666 0.997 27840 0.998 77612 0.997 16417 0.992 59875 0.971 88120 0.998 104609 0.998 14153 0.998 11695 0.993 117386 0.998 90254 0.997 19 3.964 14.87 18.834
linked 28883 G28883C|(nucleocapsid_phosphoprotein:G610C(G204R)) 53881 0.995 56022 0.999 19276 0.954 20926 0.987 4420 0.992 255987 0.999 214412 0.999 139524 0.999 45779 0.999 27884 0.999 77583 0.997 16361 0.989 45801 0.742 88168 0.998 91122 0.869 13723 0.968 11760 0.998 117546 0.999 90496 0.999 19 3.735 14.746 18.481
ubiq 29510 A29510C|(nucleocapsid_phosphoprotein:A1237C(S413R)) 7557 0.998 3175 0.997 4627 0.999 2486 0.979 508 0.998 30819 0.994 14969 0.998 14544 0.999 10041 0.999 3635 0.999 10698 0.943 1921 0.998 12047 0.999 4279 1.000 30003 0.996 5612 0.997 22072 0.933 16837 0.999 18 3.9290000000000003 13.896 17.825000000000003