KY-1 - Complete Raw Mutation Data

Full TSV data with all sample columns and abundance information
← Back to Dashboard

Complete Mutations Data

This table shows the complete data from the mutations.tsv file exactly as it appears in the source. Scroll horizontally to see all columns.

Unnamed: 0 Unnamed: 1 Unnamed: 2 Unnamed: 3 SRR20681669 Unnamed: 5 SRR20681689 Unnamed: 7 SRR20681703 Unnamed: 9 SRR20681765 Unnamed: 11 SRR20681796 Unnamed: 13 SRR20681863 Unnamed: 15 SRR20681904 Unnamed: 17 SRR20681925 Unnamed: 19 SRR20681672 Unnamed: 21 SRR20681705 Unnamed: 23 SRR20681751 Unnamed: 25 SRR20681761 Unnamed: 27 SRR20681762 Unnamed: 29 SRR20681797 Unnamed: 31 SRR20681800 Unnamed: 33 SRR20681832 Unnamed: 35 SRR20681854 Unnamed: 37 SRR20681896 Unnamed: 39 SRR20681899 Unnamed: 41 SRR20681905 Unnamed: 43 SRR20681921 Unnamed: 45 SRR20681927 Unnamed: 47 SRR20681936 Unnamed: 49 Unnamed: 50 Unnamed: 51 Unnamed: 52 Unnamed: 53 Unnamed: 54 Key Unnamed: 56
('2022-06-06', '55928') ('2022-05-23', '55928') ('2022-04-25', '55928') ('2022-03-28', '55928') ('2022-03-07', '55928') ('2022-02-28', '55928') ('2022-05-16', '55928') ('2022-04-11', '55928') ('2022-06-06', '295910') ('2022-04-25', '295910') ('2022-05-23', '349850') ('2022-06-06', '349850') ('2022-04-11', '349850') ('2022-03-07', '46659') ('2022-03-07', '295910') ('2022-03-28', '295910') ('2022-02-28', '349850') ('2022-05-23', '295910') ('2022-05-16', '349850') ('2022-05-16', '295910') ('2022-04-25', '349850') ('2022-04-11', '295910') ('2022-03-28', '349850') Cryptic Sewershed
Linked/Ubiquitous Position Flagged Sequences Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Total samples Positives Sum Negatives Sum Total Sum Non-Cryptic Sewershed
57 A57G 29621 0.177 18172 0.119 13231 0.378 40459 0.571 50495 0.277 17222 0.564 6 2.086 0 2.086
210 Delta G210T 95397 0.274 28352 0.105 47680 0.621 60551 0.954 3581 0.999 264 0.014 58452 0.211 32190 0.984 1783 0.011 324 0.002 324 0.002 1366 0.007 287 0.01 181 0.01 2 0.001 172 0.001 328 0.003 800 0.004 41 0.002 87 0.003 20 4.162 0.056 4.218
linked 241 Delta C241T 286608 0.758 268375 0.905 68173 0.801 66602 0.956 3914 0.614 19335 0.947 226048 0.707 36231 0.988 170094 0.967 139894 0.944 160040 0.944 211870 0.951 28216 0.994 15797 0.992 18903 0.996 1587 0.968 148238 0.966 123274 0.892 194114 0.98 24251 0.954 35651 0.991 29755 0.992 22 6.676 13.5309999999999 20.207
2470 RATG13 C2470T|(ORF1ab_polyprotein:C2205T(A735A))|(ORF1a_polyprotein:C2205T(A735A)) 305 0.968 2640 0.977 638 0.375 20 0.002 4 2.32 0.002 2.32199999999999
ubiq 3037 RATG13,Delta C3037T|(ORF1ab_polyprotein:C2772T(F924F))|(ORF1a_polyprotein:C2772T(F924F)) 158249 0.971 145914 0.993 22245 0.986 19516 0.951 21486 0.927 1319 0.949 125738 0.979 6032 0.96 70921 0.972 47865 0.985 99496 0.991 70582 0.976 8782 0.979 75383 0.993 27454 0.981 144627 0.977 3597 0.985 14032 0.961 6485 0.954 19 7.716 10.754 18.47
4181 G4181T|(ORF1ab_polyprotein:G3916T(A1306S))|(ORF1a_polyprotein:G3916T(A1306S)) 2410 0.058 5237 0.188 1510 0.194 5915 0.975 2643 0.714 22 0.005 1301 0.06 3012 0.787 69 0.002 54 0.004 75 0.003 3 0.004 32 0.005 35 0.002 20 0.002 7 0.004 2 0.004 17 2.981 0.03 3.01099999999999
5178 C5178T|(ORF1ab_polyprotein:C4913T(T1638I))|(ORF1a_polyprotein:C4913T(T1638I)) 99 0.001 117 0.016 2501 0.204 27553 0.685 1158 0.018 9128 0.808 6 1.732 0 1.732
6402 C6402T|(ORF1ab_polyprotein:C6137T(P2046L))|(ORF1a_polyprotein:C6137T(P2046L)) 7901 0.191 719 0.027 2004 0.382 6640 0.94 480 0.141 12683 0.176 3221 0.93 7 2.787 0 2.787
8986 C8986T|(ORF1ab_polyprotein:C8721T(D2907D))|(ORF1a_polyprotein:C8721T(D2907D)) 4562 0.133 6028 0.125 1154 0.271 4500 0.986 714 0.021 1685 0.988 6 2.524 0 2.524
9053 G9053T|(ORF1ab_polyprotein:G8788T(V2930L))|(ORF1a_polyprotein:G8788T(V2930L)) 9113 0.167 14759 0.205 2281 0.265 5859 0.974 6622 0.821 7430 0.16 1780 0.832 39 0.001 798 0.025 9 3.424 0.026 3.44999999999999
ubiq 10029 C10029T|(ORF1ab_polyprotein:C9764T(T3255I))|(ORF1a_polyprotein:C9764T(T3255I)) 177583 0.983 133338 0.97 21138 0.992 20466 0.814 9723 0.965 4406 0.981 104356 0.989 3455 0.966 168096 0.987 40691 0.991 95153 0.995 73958 0.985 1660 0.987 13159 0.989 100000 0.995 60256 0.978 130550 0.992 8044 0.993 568 0.993 15029 0.987 20 7.66 11.872 19.532
10565 G10565A|(ORF1ab_polyprotein:G10300A(V3434I))|(ORF1a_polyprotein:G10300A(V3434I)) 8116 0.093 13769 0.217 1073 0.24 5661 0.327 9031 0.603 6341 0.101 1711 0.434 7 2.015 0 2.015
10982 A10982G|(ORF1ab_polyprotein:A10717G(K3573E))|(ORF1a_polyprotein:A10717G(K3573E)) 11216 0.766 1392 0.111 2 0.877 0 0.877
11083 G11083-11083del|(ORF1ab_polyprotein:10818-10818del(3606fs))|(ORF1a_polyprotein:10818-10818del(3606fs)) 228 0.004 1030 0.618 91 0.003 25 0.001 4 0.622 0.004 0.626
11201 A11201G|(ORF1ab_polyprotein:A10936G(T3646A))|(ORF1a_polyprotein:A10936G(T3646A)) 10963 0.17 3876 0.1 1237 0.181 8401 0.984 1606 0.556 7844 0.874 6184 0.091 1187 0.608 8 3.564 0 3.564
11332 A11332G|(ORF1ab_polyprotein:A11067G(V3689V))|(ORF1a_polyprotein:A11067G(V3689V)) 17619 0.287 2839 0.079 437 0.129 3930 0.582 87 0.075 1786 0.454 9489 0.169 447 0.38 8 2.155 0 2.155
11456 A11456G|(ORF1ab_polyprotein:A11191G(I3731V))|(ORF1a_polyprotein:A11191G(I3731V)) 20781 0.281 3306 0.056 1049 0.178 13976 0.884 2344 0.891 10680 0.585 1859 0.032 7 2.907 0 2.907
12439 C12439T|(ORF1ab_polyprotein:C12174T(P4058P))|(ORF1a_polyprotein:C12174T(P4058P)) 556 0.013 1786 0.042 138 0.015 1046 0.107 1803 0.287 603 0.088 981 0.017 5 0.001 8 0.57 0 0.57
12949 A12949G|(ORF1ab_polyprotein:A12684G(L4228L))|(ORF1a_polyprotein:A12684G(L4228L)) 777 0.014 3594 0.073 6645 0.678 3046 0.986 266 0.007 5 1.758 0 1.758
15451 G15451A|(ORF1ab_polyprotein:G15187A(G5063S)) 106015 0.552 2817 0.042 9558 0.506 15704 0.92 15528 0.754 30118 0.367 6349 0.61 7 3.751 0 3.751
15930 T15930C|(ORF1ab_polyprotein:T15666C(P5222P)) 74971 0.527 1625 0.017 13429 0.523 9554 0.969 17471 0.386 22955 0.23 15567 0.844 7 3.496 0 3.496
16011 A16011G|(ORF1ab_polyprotein:A15747G(E5249E)) 315 0.62 5 0.002 2 0.622 0 0.622
16466 C16466T|(ORF1ab_polyprotein:C16202T(P5401L)) 514 0.05 230 0.015 214 0.257 612 0.986 1641 0.909 2289 0.114 292 0.734 2 0.002 36 0.004 9 3.065 0.006 3.07099999999999
19337 A19337G|(ORF1ab_polyprotein:A19073G(K6358R)) 629 0.151 503 0.672 2 0.823 0 0.823
21618 Delta C21618G|(surface_glycoprotein:C56G(T19R)) 29 0.006 21 0.175 172 0.228 50 0.61 1049 0.317 110 0.383 6 1.719 0 1.719
21636 C21636T|(surface_glycoprotein:C74T(P25L)) 47 0.016 186 0.042 21 0.231 170 0.842 1020 0.505 5 1.636 0 1.636
linked 21987 G21987A|(surface_glycoprotein:G425A(G142D)) 22854 0.974 12482 0.995 1096 0.967 5819 0.987 4554 0.766 1707 0.387 18268 0.866 786 0.992 6248 0.939 3780 0.958 9010 0.995 8180 0.782 1928 0.982 13140 0.996 12559 0.986 22199 0.968 244 0.976 246 0.828 18 6.934 9.41 16.344
22029 Delta AGTTCA22029-22034del|(surface_glycoprotein:GAGTTCAGA466-474GGAdel(EFR156-158Gdel)) 567 0.025 536 0.044 38 0.034 5275 0.903 4126 0.807 1646 0.386 2386 0.118 233 0.296 121 0.01 9 2.613 0.01 2.62299999999999
22289 GCTTTA22289-22294del|(surface_glycoprotein:727-732del(AL243-244del)) 2638 0.051 403 0.015 407 0.087 3778 0.917 2611 0.412 1650 0.524 3690 0.083 166 0.247 8 2.336 0 2.336
22344 G22344A|(surface_glycoprotein:G782A(G261D)) 6988 0.113 881 0.03 388 0.072 4002 0.077 262 0.264 12 0.001 3 0.002 7 0.556 0.003 0.559
22812 A22812C|(surface_glycoprotein:A1250C(K417T)) 271 0.093 640 0.224 75 0.806 643 0.986 378 0.396 5 1 922 0.158 129 0.52 8 4.183 0 4.183
linkedubiq 22995 RATG13,Delta C22995A|(surface_glycoprotein:C1433A(T478K)) 90590 0.991 56575 0.998 1799 0.774 18244 0.979 60315 0.975 8366 0.984 73889 0.957 5254 0.961 33558 0.991 6750 0.99 36178 0.997 18717 0.992 1539 0.988 43 1 4727 0.988 59543 0.998 53072 0.996 66686 0.995 292 0.993 931 0.986 636 0.988 21 7.619 12.902 20.521
23013 A23013T|(surface_glycoprotein:A1451T(E484V)) 1055 0.015 913 0.02 85 0.047 2821 0.257 9056 0.222 1328 0.871 394 0.006 33 0.007 2 0.019 9 1.445 0.019 1.464
linked 23018 T23018G|(surface_glycoprotein:T1456G(F486V)) 30747 0.426 1699 0.038 79 0.044 2826 0.257 9666 0.237 1302 0.854 219 0.043 7755 0.263 7407 0.244 1485 0.102 3 0.002 6 0.001 491 0.011 2 0.019 14 1.899 0.642 2.541
23056 A23056T|(surface_glycoprotein:A1494T(Q498H)) 1242 0.014 1855 0.035 79 0.028 6913 0.412 9842 0.208 5578 0.807 214 0.038 2 0.003 8 1.542 0.003 1.545
23284 T23284C|(surface_glycoprotein:T1722C(D574D)) 5776 0.198 1336 0.061 767 0.394 649 0.437 32 0.006 2875 0.109 975 0.374 2 0.003 8 1.579 0.003 1.58199999999999
ubiq 23403 Delta A23403G|(surface_glycoprotein:A1841G(D614G)) 59920 0.977 105672 0.993 1671 0.976 2727 0.978 409 0.971 666 0.968 75064 0.986 4448 0.981 39877 0.981 7960 0.97 26926 0.993 44919 0.978 9149 0.97 60842 0.994 47138 0.987 81761 0.987 419 0.963 1915 0.985 2 1 19 7.83 10.808 18.6379999999999
23604 Delta C23604G|(surface_glycoprotein:C2042G(P681R)) 4076 0.076 2467 0.023 1406 0.348 2177 0.746 523 0.266 2036 0.533 3600 0.053 1856 0.372 8 2.417 0 2.417
23987 C23987T|(surface_glycoprotein:C2425T(P809S)) 8 0.004 14 0.233 47 0.456 4 0.001 4 0.693 0.001 0.694
24054 C24054A|(surface_glycoprotein:C2492A(A831D)) 664 0.155 440 0.088 121 0.251 301 0.193 152 0.14 450 0.485 173 0.052 67 0.644 5 0.002 6 0.001 4 0.002 4 0.001 12 2.008 0.006 2.014
24130 RATG13 C24130T|(surface_glycoprotein:C2568T(N856N)) 847 0.762 7 0.006 3 0.004 96 0.019 4 0.772 0.019 0.791
24410 Delta G24410A|(surface_glycoprotein:G2848A(D950N)) 154 0.005 960 0.022 99 0.058 1172 0.596 2583 0.186 2399 0.067 415 0.578 114 0.003 8 1.512 0.003 1.515
24588 C24588T|(surface_glycoprotein:C3026T(T1009I)) 111 0.002 1328 0.021 139 0.038 644 0.219 3726 0.245 1101 0.021 141 0.132 7 0.678 0 0.678
25219 T25219G|(surface_glycoprotein:T3657G(G1219G)) 4726 0.172 1022 0.052 25 0.018 763 0.345 2450 0.749 1351 0.413 241 0.01 41 0.023 26 0.001 40 0.002 20 0.001 11 1.782 0.004 1.786
25339 C25339T|(surface_glycoprotein:C3777T(D1259D)) 4188 0.078 2926 0.081 1279 0.215 1372 0.912 76 0.013 2819 0.32 5030 0.085 1533 0.275 8 1.979 0 1.979
25469 Delta C25469T|(ORF3a_protein:C77T(S26L)) 3173 0.043 4229 0.108 1475 0.195 969 0.404 10492 0.449 4424 0.056 842 0.134 473 0.013 8 1.389 0.013 1.402
25936 C25936G|(ORF3a_protein:C544G(H182D)) 7108 0.139 3824 0.125 146 0.096 5 0.002 21 0.002 251 0.007 1359 0.437 7 0.808 0 0.808
26200 A26200T|(ORF3a_protein:A808T(T270S)) 14411 0.136 7410 0.084 2762 0.23 3 0.002 316 0.002 1563 0.188 24 0.004 12 0.002 8 0.642 0.006 0.648
26545 T26545C|(membrane_glycoprotein:T23C(I8T)) 1085 0.104 286 0.023 36 0.147 720 0.976 370 0.335 1851 0.296 553 0.078 310 0.626 8 2.585 0 2.585
26571 C26571G|(membrane_glycoprotein:C49G(L17V)) 894 0.092 203 0.018 38 0.156 711 0.99 307 0.298 1865 0.306 457 0.068 311 0.633 11 0.001 9 2.561 0.001 2.562
26767 Delta T26767C|(membrane_glycoprotein:T245C(I82T)) 6676 0.596 4231 0.417 292 0.479 160 0.193 4665 0.776 369 0.102 3198 0.33 1173 0.587 8 3.48 0 3.48
27638 Delta T27638C|(ORF7a_protein:T245C(V82A)) 3668 0.033 1573 0.017 115 0.021 2195 0.129 5932 0.22 4430 0.231 1145 0.01 1620 0.29 8 0.951 0 0.951
27752 Delta C27752T|(ORF7a_protein:C359T(T120I)) 18492 0.158 13551 0.113 270 0.059 16716 0.827 25958 0.66 12018 0.515 1588 0.013 683 0.146 8 2.491 0 2.491
27763 AACTTT27763-27768del|(ORF7b:GAACTTTCA7-15GCAdel(ELS3-5Adel)) 17718 0.172 13493 0.12 267 0.097 13249 0.352 1495 0.014 651 0.161 6 0.915999999999999 0 0.915999999999999
27791 CTTTTTAGC27791-27799del|(ORF7b:TGCTTTTTAGCC34-45TGCdel(CFLA12-15Cdel)) 7553 0.749 6056 0.259 6168 0.403 3 1.411 0 1.411
27874 C27874T|(ORF7b:C119T(T40I)) 27952 0.344 14418 0.184 163 0.326 12346 0.915 20653 0.82 6302 0.477 2319 0.028 6474 0.741 54 0.002 8 0.004 96 0.002 11 3.835 0.008 3.843
28248 GATTTC28248-28253del|(ORF8_protein:355-360del(DF119-120del)) 8813 0.21 1344 0.053 155 0.145 4897 0.822 7125 0.763 113 0.045 18 0.001 2246 0.974 8 3.013 0 3.013
linked 28271 Delta A28271-28271del 8936 0.174 1352 0.044 218 0.192 9261 0.893 6297 0.529 111 0.023 2274 0.986 437 0.125 8 2.841 0.125 2.966
28284 A28284G|(nucleocapsid_phosphoprotein:A11G(N4S)) 6750 0.164 1345 0.065 133 0.126 2151 0.941 4 1.296 0 1.296
28461 Delta A28461G|(nucleocapsid_phosphoprotein:A188G(D63G)) 31477 0.207 2564 0.024 1834 0.112 11175 0.728 558 0.039 1476 0.074 9510 0.05 5838 0.876 8 2.11 0 2.11
28657 C28657T|(nucleocapsid_phosphoprotein:C384T(D128D)) 3291 0.04 2025 0.637 382 0.171 325 0.009 22 0.001 5 0.848 0.00999999999999999 0.858
28881 G28881C|(nucleocapsid_phosphoprotein:G608C(R203T)) 1290 0.034 63 0.056 4809 0.856 473 0.524 4 1.47 0 1.47
28881 Delta G28881T|(nucleocapsid_phosphoprotein:G608T(R203M)) 5052 0.134 3054 0.162 69 0.062 387 0.069 384 0.426 405 0.346 1953 0.573 7 1.772 0 1.772
28895 G28895A|(nucleocapsid_phosphoprotein:G622A(A208T)) 6964 0.16 3123 0.159 72 0.063 1249 0.701 2619 0.618 1047 0.055 6 1.701 0.055 1.756
28916 G28916T|(nucleocapsid_phosphoprotein:G643T(G215C)) 16004 0.163 4526 0.1 799 0.21 10541 0.923 2279 0.848 443 0.059 1164 0.02 3079 0.559 79 0.001 24 0.002 135 0.002 3 0.002 57 0.002 48 0.001 9 0.001 2 0.002 16 2.882 0.013 2.895
29050 G29050A|(nucleocapsid_phosphoprotein:G777A(R259R)) 25621 0.195 4684 0.085 1048 0.182 14356 0.878 6631 0.808 451 0.026 9084 0.136 5629 0.786 3 0.002 9 3.096 0.002 3.098
29742 Delta G29742T 5284 0.363 1448 0.078 3422 0.939 8822 0.919 1704 0.799 1027 0.982 701 0.047 3706 0.998 8 5.125 0 5.125