This table shows the complete data from the mutations.tsv file exactly as it appears in the source. Scroll horizontally to see all columns.
| SRR39944611(346122) | SRR39944614(544020) | SRR39944616(1659306) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ('2026-07-13', '89616') | ('2026-07-08', '74331') | ('2026-07-05', '82158') | |||||||||||
| Sequences | Count | Abundance | Count | Abundance | Count | Abundance | Total samples | Positives Sum | Negatives Sum | Total Sum | |||
| 83 | T83G | 11 | 0.065 | 1 | 0.065 | 0 | 0.065 | ||||||
| 92 | C92A | 15 | 0.076 | 1 | 0.076 | 0 | 0.076 | ||||||
| 100 | C100A | 15 | 0.074 | 1 | 0.074 | 0 | 0.074 | ||||||
| 103 | C103A | 15 | 0.074 | 1 | 0.074 | 0 | 0.074 | ||||||
| 138 | A138G | 222 | 0.768 | 1 | 0.768 | 0 | 0.768 | ||||||
| 177 | T177C | 1 | 0.009 | 239 | 0.784 | 2 | 0.784 | 0.009 | 0.793 | ||||
| 178 | A178G | 275 | 0.902 | 1 | 0.902 | 0 | 0.902 | ||||||
| 299 | A299G|(ORF1ab_polyprotein:A34G(T12A))|(ORF1a_polyprotein:A34G(T12A)) | 257 | 0.801 | 1 | 0.801 | 0 | 0.801 | ||||||
| 315 | G315T|(ORF1ab_polyprotein:G50T(S17I))|(ORF1a_polyprotein:G50T(S17I)) | 20 | 0.074 | 1 | 0.074 | 0 | 0.074 | ||||||
| 329 | C329A|(ORF1ab_polyprotein:C64A(Q22K))|(ORF1a_polyprotein:C64A(Q22K)) | 17 | 0.077 | 1 | 0.077 | 0 | 0.077 | ||||||
| 335 | C335A|(ORF1ab_polyprotein:C70A(R24S))|(ORF1a_polyprotein:C70A(R24S)) | 159 | 0.846 | 1 | 0.846 | 0 | 0.846 | ||||||
| 344 | C344T|(ORF1ab_polyprotein:C79T(L27F))|(ORF1a_polyprotein:C79T(L27F)) | 9 | 0.052 | 1 | 0.052 | 0 | 0.052 | ||||||
| 347 | G347A|(ORF1ab_polyprotein:G82A(V28I))|(ORF1a_polyprotein:G82A(V28I)) | 120 | 0.764 | 1 | 0.764 | 0 | 0.764 | ||||||
| 378 | RATG13 | T378C|(ORF1ab_polyprotein:GTC112-114GCT(V38A))|(ORF1a_polyprotein:GTC112-114GCT(V38A)) | 28 | 0.683 | 1 | 0.683 | 0 | 0.683 | |||||
| 379 | RATG13 | C379T|(ORF1ab_polyprotein:GTC112-114GCT(V38A))|(ORF1a_polyprotein:GTC112-114GCT(V38A)) | 28 | 0.757 | 1 | 0.757 | 0 | 0.757 | |||||
| 526 | G526A|(ORF1ab_polyprotein:G261A(E87E))|(ORF1a_polyprotein:G261A(E87E)) | 23 | 1.000 | 1 | 1.0 | 0 | 1.0 | ||||||
| 570 | A570T|(ORF1ab_polyprotein:A305T(E102V))|(ORF1a_polyprotein:A305T(E102V)) | 16 | 1.000 | 1 | 1.0 | 0 | 1.0 | ||||||
| 595 | T595C|(ORF1ab_polyprotein:T330C(H110H))|(ORF1a_polyprotein:T330C(H110H)) | 11 | 1.000 | 1 | 1.0 | 0 | 1.0 | ||||||
| ubiq | 670 | T670G|(ORF1ab_polyprotein:T405G(S135R))|(ORF1a_polyprotein:T405G(S135R)) | 10 | 1.000 | 3 | 1.000 | 2 | 1.0 | 1.0 | 2.0 | |||
| 714 | G714T|(ORF1ab_polyprotein:G449T(G150V))|(ORF1a_polyprotein:G449T(G150V)) | 219 | 0.735 | 1 | 0.735 | 0 | 0.735 | ||||||
| 773 | A773G|(ORF1ab_polyprotein:A508G(T170A))|(ORF1a_polyprotein:A508G(T170A)) | 339 | 0.748 | 1 | 0.748 | 0 | 0.748 | ||||||
| 805 | G805T|(ORF1ab_polyprotein:G540T(G180G))|(ORF1a_polyprotein:G540T(G180G)) | 415 | 0.735 | 1 | 0.735 | 0 | 0.735 | ||||||
| 814 | T814C|(ORF1ab_polyprotein:T549C(T183T))|(ORF1a_polyprotein:T549C(T183T)) | 1 | 0.001 | 423 | 0.742 | 2 | 0.742 | 0.001 | 0.743 | ||||
| 864 | G864T|(ORF1ab_polyprotein:G599T(C200F))|(ORF1a_polyprotein:G599T(C200F)) | 174 | 0.223 | 1 | 0.223 | 0 | 0.223 | ||||||
| 874 | C874T|(ORF1ab_polyprotein:C609T(D203D))|(ORF1a_polyprotein:C609T(D203D)) | 573 | 0.764 | 1 | 0.764 | 0 | 0.764 | ||||||
| linked | 934 | C934T|(ORF1ab_polyprotein:C669T(D223D))|(ORF1a_polyprotein:C669T(D223D)) | 628 | 0.780 | 320 | 0.746 | 2 | 0.746 | 0.78 | 1.526 | |||
| 943 | RATG13 | G943A|(ORF1ab_polyprotein:G678A(R226R))|(ORF1a_polyprotein:G678A(R226R)) | 299 | 0.753 | 1 | 0.753 | 0 | 0.753 | |||||
| 1043 | G1043A|(ORF1ab_polyprotein:G778A(A260T))|(ORF1a_polyprotein:G778A(A260T)) | 1643 | 0.083 | 1 | 0.083 | 0 | 0.083 | ||||||
| 1060 | C1060T|(ORF1ab_polyprotein:C795T(T265T))|(ORF1a_polyprotein:C795T(T265T)) | 1 | 0.000 | 3025 | 0.135 | 2 | 0.135 | 0.0 | 0.135 | ||||
| 1131 | A1131-1131del|(ORF1ab_polyprotein:866-866del(289fs))|(ORF1a_polyprotein:866-866del(289fs)) | 2657 | 0.141 | 1 | 0.141 | 0 | 0.141 | ||||||
| 1243 | T1243C|(ORF1ab_polyprotein:T978C(C326C))|(ORF1a_polyprotein:T978C(C326C)) | 1 | 0.000 | 4856 | 0.251 | 2 | 0.251 | 0.0 | 0.251 | ||||
| 1267 | C1267G|(ORF1ab_polyprotein:C1002G(G334G))|(ORF1a_polyprotein:C1002G(G334G)) | 1541 | 0.073 | 1 | 0.073 | 0 | 0.073 | ||||||
| 1309 | T1309-1309del|(ORF1ab_polyprotein:1044-1044del(348fs))|(ORF1a_polyprotein:1044-1044del(348fs)) | 967 | 0.076 | 1 | 0.076 | 0 | 0.076 | ||||||
| 1367 | A1367G|(ORF1ab_polyprotein:A1102G(I368V))|(ORF1a_polyprotein:A1102G(I368V)) | 3017 | 0.895 | 1 | 0.895 | 0 | 0.895 | ||||||
| 1391 | RATG13 | T1391C|(ORF1ab_polyprotein:T1126C(S376P))|(ORF1a_polyprotein:T1126C(S376P)) | 3286 | 0.893 | 1 | 0.893 | 0 | 0.893 | |||||
| 1396 | A1396C|(ORF1ab_polyprotein:A1131C(E377D))|(ORF1a_polyprotein:A1131C(E377D)) | 3274 | 0.897 | 1 | 0.897 | 0 | 0.897 | ||||||
| 1461 | A1461G|(ORF1ab_polyprotein:A1196G(K399R))|(ORF1a_polyprotein:A1196G(K399R)) | 4655 | 0.909 | 1 | 0.909 | 0 | 0.909 | ||||||
| 1492 | T1492C|(ORF1ab_polyprotein:T1227C(C409C))|(ORF1a_polyprotein:T1227C(C409C)) | 4654 | 0.902 | 1 | 0.902 | 0 | 0.902 | ||||||
| 1528 | C1528T|(ORF1ab_polyprotein:C1263T(A421A))|(ORF1a_polyprotein:C1263T(A421A)) | 314 | 0.061 | 1 | 0.061 | 0 | 0.061 | ||||||
| 1562 | T1562A|(ORF1ab_polyprotein:T1297A(C433S))|(ORF1a_polyprotein:T1297A(C433S)) | 2356 | 0.910 | 1 | 0.91 | 0 | 0.91 | ||||||
| 1614 | T1614-1614del|(ORF1ab_polyprotein:1349-1349del(450fs))|(ORF1a_polyprotein:1349-1349del(450fs)) | 367 | 0.073 | 1 | 0.073 | 0 | 0.073 | ||||||
| 1846 | A1846C|(ORF1ab_polyprotein:A1581C(K527N))|(ORF1a_polyprotein:A1581C(K527N)) | 2158 | 0.637 | 1 | 0.637 | 0 | 0.637 | ||||||
| 1943 | C1943T|(ORF1ab_polyprotein:C1678T(R560C))|(ORF1a_polyprotein:C1678T(R560C)) | 8719 | 0.737 | 1 | 0.737 | 0 | 0.737 | ||||||
| 1974 | T1974C|(ORF1ab_polyprotein:T1709C(L570P))|(ORF1a_polyprotein:T1709C(L570P)) | 1020 | 0.074 | 1 | 0.074 | 0 | 0.074 | ||||||
| 2098 | GT2098-2099del|(ORF1ab_polyprotein:CAGTGG1831-1836CAGCdel(QW611-612Qdel;fs))|(ORF1a_polyprotein:CAGTGG1831-1836CAGCdel(QW611-612Qdel;fs)) | 983 | 0.072 | 1 | 0.072 | 0 | 0.072 | ||||||
| 2101 | G2101C|(ORF1ab_polyprotein:CAGTGG1831-1836CAGCdel(QW611-612Qdel;fs))|(ORF1a_polyprotein:CAGTGG1831-1836CAGCdel(QW611-612Qdel;fs)) | 983 | 0.072 | 1 | 0.072 | 0 | 0.072 | ||||||
| 2280 | A2280G|(ORF1ab_polyprotein:A2015G(K672R))|(ORF1a_polyprotein:A2015G(K672R)) | 210 | 0.755 | 1 | 0.755 | 0 | 0.755 | ||||||
| 2297 | T2297-2297del|(ORF1ab_polyprotein:2032-2032del(678fs))|(ORF1a_polyprotein:2032-2032del(678fs)) | 57 | 0.174 | 1 | 0.174 | 0 | 0.174 | ||||||
| 2318 | T2318A|(ORF1ab_polyprotein:T2053A(F685I))|(ORF1a_polyprotein:T2053A(F685I)) | 249 | 0.766 | 1 | 0.766 | 0 | 0.766 | ||||||
| 2398 | RATG13 | G2398A|(ORF1ab_polyprotein:G2133A(T711T))|(ORF1a_polyprotein:G2133A(T711T)) | 210 | 0.544 | 1 | 0.544 | 0 | 0.544 | |||||
| 2455 | C2455T|(ORF1ab_polyprotein:C2190T(L730L))|(ORF1a_polyprotein:C2190T(L730L)) | 260 | 0.610 | 1 | 0.61 | 0 | 0.61 | ||||||
| 2509 | RATG13 | C2509T|(ORF1ab_polyprotein:C2244T(P748P))|(ORF1a_polyprotein:C2244T(P748P)) | 17 | 0.076 | 1 | 0.076 | 0 | 0.076 | |||||
| 2611 | A2611G|(ORF1ab_polyprotein:A2346G(P782P))|(ORF1a_polyprotein:A2346G(P782P)) | 12 | 0.004 | 16120 | 0.997 | 2 | 0.997 | 0.004 | 1.001 | ||||
| 2680 | T2680C|(ORF1ab_polyprotein:T2415C(N805N))|(ORF1a_polyprotein:T2415C(N805N)) | 16191 | 0.996 | 1 | 0.996 | 0 | 0.996 | ||||||
| 2720 | G2720T|(ORF1ab_polyprotein:G2455T(A819S))|(ORF1a_polyprotein:G2455T(A819S)) | 18076 | 0.999 | 1 | 0.999 | 0 | 0.999 | ||||||
| 2786 | A2786G|(ORF1ab_polyprotein:A2521G(I841V))|(ORF1a_polyprotein:A2521G(I841V)) | 16350 | 0.998 | 1 | 0.998 | 0 | 0.998 | ||||||
| 2837 | T2837-2837del|(ORF1ab_polyprotein:2572-2572del(858fs))|(ORF1a_polyprotein:2572-2572del(858fs)) | 414 | 0.069 | 1 | 0.069 | 0 | 0.069 | ||||||
| 2861 | A2861C|(ORF1ab_polyprotein:A2596C(T866P))|(ORF1a_polyprotein:A2596C(T866P)) | 1 | 0.083 | 1 | 0.083 | 0 | 0.083 | ||||||
| linkedubiq | 3037 | RATG13,Delta | C3037T|(ORF1ab_polyprotein:C2772T(F924F))|(ORF1a_polyprotein:C2772T(F924F)) | 26 | 1.000 | 35 | 1.000 | 99 | 0.990 | 3 | 0.99 | 2.0 | 2.99 |
| 3047 | G3047A|(ORF1ab_polyprotein:GAT2782-2784AAA(D928K))|(ORF1a_polyprotein:GAT2782-2784AAA(D928K)) | 10 | 0.103 | 1 | 0.103 | 0 | 0.103 | ||||||
| 3049 | T3049A|(ORF1ab_polyprotein:GAT2782-2784AAA(D928K))|(ORF1a_polyprotein:GAT2782-2784AAA(D928K)) | 10 | 0.104 | 1 | 0.104 | 0 | 0.104 | ||||||
| 3049 | T3049A|(ORF1ab_polyprotein:T2784A(D928E))|(ORF1a_polyprotein:T2784A(D928E)) | 56 | 0.583 | 1 | 0.583 | 0 | 0.583 | ||||||
| 3065 | G3065T|(ORF1ab_polyprotein:G2800T(G934C))|(ORF1a_polyprotein:G2800T(G934C)) | 66 | 0.750 | 1 | 0.75 | 0 | 0.75 | ||||||
| 3075 | A3075G|(ORF1ab_polyprotein:A2810G(E937G))|(ORF1a_polyprotein:A2810G(E937G)) | 59 | 0.720 | 1 | 0.72 | 0 | 0.72 | ||||||
| 3102 | 3102-insertA|(ORF1ab_polyprotein:2837insertA(946fs))|(ORF1a_polyprotein:2837insertA(946fs)) | 12 | 0.179 | 1 | 0.179 | 0 | 0.179 | ||||||
| 3140 | RATG13 | C3140T|(ORF1ab_polyprotein:C2875T(P959S))|(ORF1a_polyprotein:C2875T(P959S)) | 2722 | 0.999 | 1 | 0.999 | 0 | 0.999 | |||||
| 3264 | C3264T|(ORF1ab_polyprotein:C2999T(T1000I))|(ORF1a_polyprotein:C2999T(T1000I)) | 4361 | 0.998 | 1 | 0.998 | 0 | 0.998 | ||||||
| 3329 | A3329G|(ORF1ab_polyprotein:A3064G(T1022A))|(ORF1a_polyprotein:A3064G(T1022A)) | 3868 | 0.998 | 1 | 0.998 | 0 | 0.998 | ||||||
| 3333 | TTG3333-3335del|(ORF1ab_polyprotein:ATTGAA3067-3072AAAdel(IE1023-1024Kdel))|(ORF1a_polyprotein:ATTGAA3067-3072AAAdel(IE1023-1024Kdel)) | 3630 | 0.998 | 1 | 0.998 | 0 | 0.998 | ||||||
| 3565 | T3565C|(ORF1ab_polyprotein:T3300C(G1100G))|(ORF1a_polyprotein:T3300C(G1100G)) | 1379 | 0.205 | 1 | 0.205 | 0 | 0.205 | ||||||
| 3636 | A3636C|(ORF1ab_polyprotein:A3371C(K1124T))|(ORF1a_polyprotein:A3371C(K1124T)) | 4927 | 0.782 | 1 | 0.782 | 0 | 0.782 | ||||||
| 3932 | G3932A|(ORF1ab_polyprotein:G3667A(E1223K))|(ORF1a_polyprotein:G3667A(E1223K)) | 45 | 1.000 | 1 | 1.0 | 0 | 1.0 | ||||||
| 3940 | A3940C|(ORF1ab_polyprotein:A3675C(R1225S))|(ORF1a_polyprotein:A3675C(R1225S)) | 51 | 1.000 | 1 | 1.0 | 0 | 1.0 | ||||||
| 3991 | T3991C|(ORF1ab_polyprotein:T3726C(T1242T))|(ORF1a_polyprotein:T3726C(T1242T)) | 15 | 0.195 | 1 | 0.195 | 0 | 0.195 | ||||||
| 4181 | G4181T|(ORF1ab_polyprotein:G3916T(A1306S))|(ORF1a_polyprotein:G3916T(A1306S)) | 2194 | 0.998 | 1 | 0.998 | 0 | 0.998 | ||||||
| 4388 | T4388C|(ORF1ab_polyprotein:T4123C(L1375L))|(ORF1a_polyprotein:T4123C(L1375L)) | 1100 | 0.998 | 1 | 0.998 | 0 | 0.998 | ||||||
| 4466 | A4466G|(ORF1ab_polyprotein:ACT4201-4203GTT(T1401V))|(ORF1a_polyprotein:ACT4201-4203GTT(T1401V)) | 1167 | 0.998 | 1 | 0.998 | 0 | 0.998 | ||||||
| 4467 | C4467T|(ORF1ab_polyprotein:ACT4201-4203GTT(T1401V))|(ORF1a_polyprotein:ACT4201-4203GTT(T1401V)) | 1167 | 0.998 | 1 | 0.998 | 0 | 0.998 | ||||||
| 4597 | T4597C|(ORF1ab_polyprotein:T4332C(T1444T))|(ORF1a_polyprotein:T4332C(T1444T)) | 1433 | 0.999 | 1 | 0.999 | 0 | 0.999 | ||||||
| 4881 | G4881T|(ORF1ab_polyprotein:G4616T(S1539I))|(ORF1a_polyprotein:G4616T(S1539I)) | 5089 | 0.998 | 1 | 0.998 | 0 | 0.998 | ||||||
| 5053 | A5053T|(ORF1ab_polyprotein:A4788T(P1596P))|(ORF1a_polyprotein:A4788T(P1596P)) | 312 | 0.080 | 1 | 0.08 | 0 | 0.08 | ||||||
| 5151 | RATG13 | T5151C|(ORF1ab_polyprotein:T4886C(V1629A))|(ORF1a_polyprotein:T4886C(V1629A)) | 2 | 0.001 | 2751 | 0.998 | 2 | 0.998 | 0.001 | 0.999 | |||
| 5269 | A5269G|(ORF1ab_polyprotein:A5004G(K1668K))|(ORF1a_polyprotein:A5004G(K1668K)) | 2104 | 0.878 | 1 | 0.878 | 0 | 0.878 | ||||||
| linked | 5581 | C5581A|(ORF1ab_polyprotein:C5316A(G1772G))|(ORF1a_polyprotein:C5316A(G1772G)) | 1 | 0.333 | 11302 | 0.885 | 2 | 0.885 | 0.333 | 1.218 | |||
| 5600 | RATG13 | T5600C|(ORF1ab_polyprotein:T5335C(F1779L))|(ORF1a_polyprotein:T5335C(F1779L)) | 1 | 0.000 | 726 | 0.421 | 2 | 0.421 | 0.0 | 0.421 | |||
| 5648 | RATG13 | A5648C|(ORF1ab_polyprotein:A5383C(K1795Q))|(ORF1a_polyprotein:A5383C(K1795Q)) | 2 | 0.000 | 1037 | 0.437 | 2 | 0.437 | 0.0 | 0.437 | |||
| 5834 | T5834C|(ORF1ab_polyprotein:T5569C(S1857P))|(ORF1a_polyprotein:T5569C(S1857P)) | 8 | 0.001 | 1272 | 0.479 | 2 | 0.479 | 0.001 | 0.48 | ||||
| 5838 | A5838C|(ORF1ab_polyprotein:A5573C(E1858A))|(ORF1a_polyprotein:A5573C(E1858A)) | 1 | 0.000 | 5 | 0.000 | 383 | 0.144 | 3 | 0.144 | 0.0 | 0.144 | ||
| 5959 | T5959G|(ORF1ab_polyprotein:T5694G(N1898K))|(ORF1a_polyprotein:T5694G(N1898K)) | 857 | 0.272 | 1 | 0.272 | 0 | 0.272 | ||||||
| 6015 | A6015C|(ORF1ab_polyprotein:A5750C(N1917T))|(ORF1a_polyprotein:A5750C(N1917T)) | 1 | 0.001 | 3273 | 0.999 | 2 | 0.999 | 0.001 | 1.0 | ||||
| 6027 | C6027A|(ORF1ab_polyprotein:C5762A(P1921Q))|(ORF1a_polyprotein:C5762A(P1921Q)) | 3290 | 0.999 | 1 | 0.999 | 0 | 0.999 | ||||||
| 6040 | C6040T|(ORF1ab_polyprotein:C5775T(F1925F))|(ORF1a_polyprotein:C5775T(F1925F)) | 3748 | 0.999 | 1 | 0.999 | 0 | 0.999 | ||||||
| linked | 6188 | T6188C|(ORF1ab_polyprotein:T5923C(Y1975H))|(ORF1a_polyprotein:T5923C(Y1975H)) | 2 | 0.001 | 1 | 0.001 | 0 | 0.001 | |||||
| linked | 6193 | A6193C|(ORF1ab_polyprotein:A5928C(T1976T))|(ORF1a_polyprotein:A5928C(T1976T)) | 2 | 0.002 | 2 | 0.001 | 2 | 0.001 | 0.002 | 0.003 | |||
| linked | 6220 | G6220T|(ORF1ab_polyprotein:G5955T(L1985F))|(ORF1a_polyprotein:G5955T(L1985F)) | 1 | 0.001 | 1 | 0.001 | 0 | 0.001 | |||||
| 6248 | A6248C|(ORF1ab_polyprotein:A5983C(N1995H))|(ORF1a_polyprotein:A5983C(N1995H)) | 1 | 0.200 | 1 | 0.2 | 0 | 0.2 | ||||||
| 6248 | A6248G|(ORF1ab_polyprotein:A5983G(N1995D))|(ORF1a_polyprotein:A5983G(N1995D)) | 1 | 0.200 | 1 | 0.2 | 0 | 0.2 | ||||||
| 6254 | 6254-insertG|(ORF1ab_polyprotein:GCAACT5989-5994GGCAAT(AT1997-1998GN))|(ORF1a_polyprotein:GCAACT5989-5994GGCAAT(AT1997-1998GN)) | 1 | 0.200 | 1 | 0.2 | 0 | 0.2 | ||||||
| 6258 | C6258-6258del|(ORF1ab_polyprotein:GCAACT5989-5994GGCAAT(AT1997-1998GN))|(ORF1a_polyprotein:GCAACT5989-5994GGCAAT(AT1997-1998GN)) | 1 | 0.167 | 1 | 0.167 | 0 | 0.167 | ||||||
| 6262 | RATG13 | T6262C|(ORF1ab_polyprotein:T5997C(N1999N))|(ORF1a_polyprotein:T5997C(N1999N)) | 1 | 0.167 | 1 | 0.167 | 0 | 0.167 | |||||
| 6263 | A6263C|(ORF1ab_polyprotein:A5998C(K2000Q))|(ORF1a_polyprotein:A5998C(K2000Q)) | 1 | 0.167 | 1 | 0.167 | 0 | 0.167 | ||||||
| 6283 | RATG13 | T6283C|(ORF1ab_polyprotein:T6018C(N2006N))|(ORF1a_polyprotein:T6018C(N2006N)) | 6 | 0.857 | 1 | 0.857 | 0 | 0.857 | |||||
| 6313 | A6313T|(ORF1ab_polyprotein:A6048T(T2016T))|(ORF1a_polyprotein:A6048T(T2016T)) | 8 | 1.000 | 1 | 1.0 | 0 | 1.0 | ||||||
| 6402 | C6402T|(ORF1ab_polyprotein:C6137T(P2046L))|(ORF1a_polyprotein:C6137T(P2046L)) | 6 | 1.000 | 1 | 1.0 | 0 | 1.0 | ||||||
| 6423 | 6423-insertA|(ORF1ab_polyprotein:6158insertA(2053fs))|(ORF1a_polyprotein:6158insertA(2053fs)) | 2 | 0.222 | 1 | 0.222 | 0 | 0.222 | ||||||
| 6759 | G6759T|(ORF1ab_polyprotein:G6494T(C2165F))|(ORF1a_polyprotein:G6494T(C2165F)) | 2 | 0.333 | 1 | 0.333 | 0 | 0.333 | ||||||
| 6778 | T6778C|(ORF1ab_polyprotein:T6513C(Y2171Y))|(ORF1a_polyprotein:T6513C(Y2171Y)) | 2 | 0.069 | 1 | 0.069 | 0 | 0.069 | ||||||
| 6805 | T6805C|(ORF1ab_polyprotein:T6540C(C2180C))|(ORF1a_polyprotein:T6540C(C2180C)) | 1046 | 0.391 | 1 | 0.391 | 0 | 0.391 | ||||||
| 6854 | A6854G|(ORF1ab_polyprotein:A6589G(T2197A))|(ORF1a_polyprotein:A6589G(T2197A)) | 1899 | 0.523 | 1 | 0.523 | 0 | 0.523 | ||||||
| 7042 | G7042C|(ORF1ab_polyprotein:G6777C(M2259I))|(ORF1a_polyprotein:G6777C(M2259I)) | 229 | 0.071 | 1 | 0.071 | 0 | 0.071 | ||||||
| 7124 | C7124T|(ORF1ab_polyprotein:C6859T(P2287S))|(ORF1a_polyprotein:C6859T(P2287S)) | 146 | 0.961 | 1 | 0.961 | 0 | 0.961 | ||||||
| 7328 | G7328T|(ORF1ab_polyprotein:G7063T(A2355S))|(ORF1a_polyprotein:G7063T(A2355S)) | 3 | 0.009 | 242 | 0.996 | 2 | 0.996 | 0.009 | 1.005 | ||||
| 7420 | C7420A|(ORF1ab_polyprotein:C7155A(I2385I))|(ORF1a_polyprotein:C7155A(I2385I)) | 21 | 0.157 | 1 | 0.157 | 0 | 0.157 | ||||||
| 7452 | G7452T|(ORF1ab_polyprotein:G7187T(S2396I))|(ORF1a_polyprotein:G7187T(S2396I)) | 2305 | 0.996 | 1 | 0.996 | 0 | 0.996 | ||||||
| 7633 | RATG13 | T7633C|(ORF1ab_polyprotein:T7368C(D2456D))|(ORF1a_polyprotein:T7368C(D2456D)) | 916 | 0.219 | 1 | 0.219 | 0 | 0.219 | |||||
| 7764 | C7764T|(ORF1ab_polyprotein:C7499T(S2500F))|(ORF1a_polyprotein:C7499T(S2500F)) | 1666 | 0.997 | 1 | 0.997 | 0 | 0.997 | ||||||
| 7783 | T7783C|(ORF1ab_polyprotein:T7518C(D2506D))|(ORF1a_polyprotein:T7518C(D2506D)) | 2452 | 0.997 | 1 | 0.997 | 0 | 0.997 | ||||||
| 7929 | A7929G|(ORF1ab_polyprotein:A7664G(K2555R))|(ORF1a_polyprotein:A7664G(K2555R)) | 2116 | 0.862 | 1 | 0.862 | 0 | 0.862 | ||||||
| 7937 | T7937G|(ORF1ab_polyprotein:T7672G(S2558A))|(ORF1a_polyprotein:T7672G(S2558A)) | 2377 | 0.999 | 1 | 0.999 | 0 | 0.999 | ||||||
| 8152 | C8152T|(ORF1ab_polyprotein:C7887T(V2629V))|(ORF1a_polyprotein:C7887T(V2629V)) | 20 | 0.105 | 1 | 0.105 | 0 | 0.105 | ||||||
| 8167 | T8167A|(ORF1ab_polyprotein:T7902A(I2634I))|(ORF1a_polyprotein:T7902A(I2634I)) | 113 | 0.538 | 1 | 0.538 | 0 | 0.538 | ||||||
| 8582 | T8582C|(ORF1ab_polyprotein:T8317C(L2773L))|(ORF1a_polyprotein:T8317C(L2773L)) | 3500 | 0.999 | 1 | 0.999 | 0 | 0.999 | ||||||
| 8664 | C8664T|(ORF1ab_polyprotein:C8399T(T2800I))|(ORF1a_polyprotein:C8399T(T2800I)) | 423 | 0.361 | 1 | 0.361 | 0 | 0.361 | ||||||
| 8684 | A8684G|(ORF1ab_polyprotein:A8419G(I2807V))|(ORF1a_polyprotein:A8419G(I2807V)) | 4 | 0.093 | 1 | 0.093 | 0 | 0.093 | ||||||
| 8719 | T8719C|(ORF1ab_polyprotein:T8454C(R2818R))|(ORF1a_polyprotein:T8454C(R2818R)) | 14 | 0.212 | 1 | 0.212 | 0 | 0.212 | ||||||
| 8818 | RATG13 | C8818T|(ORF1ab_polyprotein:C8553T(C2851C))|(ORF1a_polyprotein:C8553T(C2851C)) | 12 | 0.128 | 1 | 0.128 | 0 | 0.128 | |||||
| 8830 | T8830C|(ORF1ab_polyprotein:T8565C(A2855A))|(ORF1a_polyprotein:T8565C(A2855A)) | 68 | 0.723 | 1 | 0.723 | 0 | 0.723 | ||||||
| 8851 | G8851T|(ORF1ab_polyprotein:G8586T(V2862V))|(ORF1a_polyprotein:G8586T(V2862V)) | 68 | 0.764 | 1 | 0.764 | 0 | 0.764 | ||||||
| 8870 | RATG13 | T8870C|(ORF1ab_polyprotein:T8605C(L2869L))|(ORF1a_polyprotein:T8605C(L2869L)) | 27 | 0.281 | 1 | 0.281 | 0 | 0.281 | |||||
| 8881 | G8881C|(ORF1ab_polyprotein:G8616C(T2872T))|(ORF1a_polyprotein:G8616C(T2872T)) | 28 | 0.280 | 1 | 0.28 | 0 | 0.28 | ||||||
| 8986 | C8986T|(ORF1ab_polyprotein:C8721T(D2907D))|(ORF1a_polyprotein:C8721T(D2907D)) | 1940 | 0.999 | 1 | 0.999 | 0 | 0.999 | ||||||
| 8990 | G8990T|(ORF1ab_polyprotein:G8725T(A2909S))|(ORF1a_polyprotein:G8725T(A2909S)) | 1972 | 0.996 | 1 | 0.996 | 0 | 0.996 | ||||||
| 9053 | G9053T|(ORF1ab_polyprotein:G8788T(V2930L))|(ORF1a_polyprotein:G8788T(V2930L)) | 3808 | 0.995 | 1 | 0.995 | 0 | 0.995 | ||||||
| 9124 | T9124C|(ORF1ab_polyprotein:T8859C(R2953R))|(ORF1a_polyprotein:T8859C(R2953R)) | 407 | 0.115 | 1 | 0.115 | 0 | 0.115 | ||||||
| 9146 | A9146T|(ORF1ab_polyprotein:A8881T(I2961F))|(ORF1a_polyprotein:A8881T(I2961F)) | 3210 | 0.998 | 1 | 0.998 | 0 | 0.998 | ||||||
| 9175 | A9175C|(ORF1ab_polyprotein:A8910C(E2970D))|(ORF1a_polyprotein:A8910C(E2970D)) | 3856 | 0.994 | 1 | 0.994 | 0 | 0.994 | ||||||
| 9208 | T9208A|(ORF1ab_polyprotein:T8943A(S2981S))|(ORF1a_polyprotein:T8943A(S2981S)) | 2061 | 0.457 | 1 | 0.457 | 0 | 0.457 | ||||||
| 9251 | G9251A|(ORF1ab_polyprotein:G8986A(V2996I))|(ORF1a_polyprotein:G8986A(V2996I)) | 1 | 0.000 | 12027 | 0.877 | 2 | 0.877 | 0.0 | 0.877 | ||||
| 9343 | A9343G|(ORF1ab_polyprotein:A9078G(L3026L))|(ORF1a_polyprotein:A9078G(L3026L)) | 1 | 0.000 | 772 | 0.056 | 2 | 0.056 | 0.0 | 0.056 | ||||
| 9377 | A9377G|(ORF1ab_polyprotein:A9112G(I3038V))|(ORF1a_polyprotein:A9112G(I3038V)) | 1 | 0.000 | 10823 | 0.836 | 2 | 0.836 | 0.0 | 0.836 | ||||
| 9389 | G9389A|(ORF1ab_polyprotein:G9124A(D3042N))|(ORF1a_polyprotein:G9124A(D3042N)) | 10915 | 0.845 | 1 | 0.845 | 0 | 0.845 | ||||||
| 9440 | T9440A|(ORF1ab_polyprotein:T9175A(C3059S))|(ORF1a_polyprotein:T9175A(C3059S)) | 13730 | 0.853 | 1 | 0.853 | 0 | 0.853 | ||||||
| 9473 | G9473A|(ORF1ab_polyprotein:G9208A(A3070T))|(ORF1a_polyprotein:G9208A(A3070T)) | 1 | 0.000 | 6453 | 0.471 | 2 | 0.471 | 0.0 | 0.471 | ||||
| 9501 | C9501T|(ORF1ab_polyprotein:C9236T(A3079V))|(ORF1a_polyprotein:C9236T(A3079V)) | 7838 | 0.835 | 1 | 0.835 | 0 | 0.835 | ||||||
| 9529 | A9529G|(ORF1ab_polyprotein:A9264G(S3088S))|(ORF1a_polyprotein:A9264G(S3088S)) | 1797 | 0.775 | 1 | 0.775 | 0 | 0.775 | ||||||
| 9559 | C9559T|(ORF1ab_polyprotein:C9294T(Y3098Y))|(ORF1a_polyprotein:C9294T(Y3098Y)) | 397 | 0.087 | 1 | 0.087 | 0 | 0.087 | ||||||
| 9693 | RATG13 | C9693T|(ORF1ab_polyprotein:C9428T(A3143V))|(ORF1a_polyprotein:C9428T(A3143V)) | 5024 | 0.884 | 1 | 0.884 | 0 | 0.884 | |||||
| 9890 | G9890T|(ORF1ab_polyprotein:G9625T(A3209S))|(ORF1a_polyprotein:G9625T(A3209S)) | 953 | 1.000 | 1 | 1.0 | 0 | 1.0 | ||||||
| ubiq | 10029 | C10029T|(ORF1ab_polyprotein:C9764T(T3255I))|(ORF1a_polyprotein:C9764T(T3255I)) | 253 | 1.000 | 1187 | 0.999 | 2 | 0.999 | 1.0 | 1.999 | |||
| 10295 | T10295A|(ORF1ab_polyprotein:T10030A(S3344T))|(ORF1a_polyprotein:T10030A(S3344T)) | 3685 | 0.999 | 1 | 0.999 | 0 | 0.999 | ||||||
| 10378 | A10378G|(ORF1ab_polyprotein:A10113G(P3371P))|(ORF1a_polyprotein:A10113G(P3371P)) | 4 | 0.000 | 4091 | 0.916 | 2 | 0.916 | 0.0 | 0.916 | ||||
| 10378 | RATG13 | A10378T|(ORF1ab_polyprotein:A10113T(P3371P))|(ORF1a_polyprotein:A10113T(P3371P)) | 352 | 0.079 | 1 | 0.079 | 0 | 0.079 | |||||
| 10421 | T10421G|(ORF1ab_polyprotein:T10156G(S3386A))|(ORF1a_polyprotein:T10156G(S3386A)) | 1 | 0.000 | 2866 | 0.999 | 2 | 0.999 | 0.0 | 0.999 | ||||
| 10553 | T10553C|(ORF1ab_polyprotein:T10288C(L3430L))|(ORF1a_polyprotein:T10288C(L3430L)) | 1 | 0.000 | 6922 | 0.988 | 2 | 0.988 | 0.0 | 0.988 | ||||
| 10631 | G10631T|(ORF1ab_polyprotein:G10366T(A3456S))|(ORF1a_polyprotein:G10366T(A3456S)) | 6624 | 0.998 | 1 | 0.998 | 0 | 0.998 | ||||||
| 10704 | G10704T|(ORF1ab_polyprotein:G10439T(R3480M))|(ORF1a_polyprotein:G10439T(R3480M)) | 2167 | 0.299 | 1 | 0.299 | 0 | 0.299 | ||||||
| 10854 | C10854A|(ORF1ab_polyprotein:C10589A(S3530*))|(ORF1a_polyprotein:C10589A(S3530*)) | 1 | 0.071 | 1 | 0.071 | 0 | 0.071 | ||||||
| 10891 | T10891G|(ORF1ab_polyprotein:T10626G(R3542R))|(ORF1a_polyprotein:T10626G(R3542R)) | 1 | 0.071 | 1 | 0.071 | 0 | 0.071 | ||||||
| 10899 | T10899G|(ORF1ab_polyprotein:T10634G(L3545W))|(ORF1a_polyprotein:T10634G(L3545W)) | 1 | 0.071 | 1 | 0.071 | 0 | 0.071 | ||||||
| 10948 | A10948C|(ORF1ab_polyprotein:A10683C(R3561S))|(ORF1a_polyprotein:A10683C(R3561S)) | 10 | 1.000 | 1 | 1.0 | 0 | 1.0 | ||||||
| 11016 | T11016G|(ORF1ab_polyprotein:T10751G(L3584*))|(ORF1a_polyprotein:T10751G(L3584*)) | 1 | 0.059 | 1 | 0.059 | 0 | 0.059 | ||||||
| 11076 | T11076C|(ORF1ab_polyprotein:T10811C(F3604S))|(ORF1a_polyprotein:T10811C(F3604S)) | 12580 | 0.998 | 1 | 0.998 | 0 | 0.998 | ||||||
| 11112 | T11112C|(ORF1ab_polyprotein:T10847C(M3616T))|(ORF1a_polyprotein:T10847C(M3616T)) | 19526 | 0.674 | 1 | 0.674 | 0 | 0.674 | ||||||
| 11201 | A11201G|(ORF1ab_polyprotein:A10936G(T3646A))|(ORF1a_polyprotein:A10936G(T3646A)) | 3 | 0.000 | 28369 | 0.998 | 2 | 0.998 | 0.0 | 0.998 | ||||
| 11207 | G11207T|(ORF1ab_polyprotein:G10942T(A3648S))|(ORF1a_polyprotein:G10942T(A3648S)) | 4 | 0.001 | 28829 | 0.998 | 2 | 0.998 | 0.001 | 0.999 | ||||
| 11294 | T11294G|(ORF1ab_polyprotein:T11029G(F3677V))|(ORF1a_polyprotein:T11029G(F3677V)) | 12974 | 0.446 | 1 | 0.446 | 0 | 0.446 | ||||||
| 11332 | A11332G|(ORF1ab_polyprotein:A11067G(V3689V))|(ORF1a_polyprotein:A11067G(V3689V)) | 22340 | 0.999 | 1 | 0.999 | 0 | 0.999 | ||||||
| 11430 | A11430G|(ORF1ab_polyprotein:A11165G(Y3722C))|(ORF1a_polyprotein:A11165G(Y3722C)) | 3593 | 1.000 | 1 | 1.0 | 0 | 1.0 | ||||||
| 11514 | C11514T|(ORF1ab_polyprotein:C11249T(T3750I))|(ORF1a_polyprotein:C11249T(T3750I)) | 2 | 0.002 | 2818 | 0.999 | 2 | 0.999 | 0.002 | 1.001 | ||||
| 11651 | C11651T|(ORF1ab_polyprotein:CTC11386-11388TTT(L3796F))|(ORF1a_polyprotein:CTC11386-11388TTT(L3796F)) | 254 | 0.127 | 1 | 0.127 | 0 | 0.127 | ||||||
| 11653 | C11653T|(ORF1ab_polyprotein:C11388T(L3796L))|(ORF1a_polyprotein:C11388T(L3796L)) | 451 | 0.324 | 1 | 0.324 | 0 | 0.324 | ||||||
| 11653 | C11653T|(ORF1ab_polyprotein:CTC11386-11388TTT(L3796F))|(ORF1a_polyprotein:CTC11386-11388TTT(L3796F)) | 254 | 0.183 | 1 | 0.183 | 0 | 0.183 | ||||||
| 11721 | A11721-11721del|(ORF1ab_polyprotein:11456-11456del(3819fs))|(ORF1a_polyprotein:11456-11456del(3819fs)) | 16 | 0.050 | 1 | 0.05 | 0 | 0.05 | ||||||
| 11773 | T11773A|(ORF1ab_polyprotein:T11508A(D3836E))|(ORF1a_polyprotein:T11508A(D3836E)) | 358 | 1.000 | 1 | 1.0 | 0 | 1.0 | ||||||
| 12034 | T12034C|(ORF1ab_polyprotein:T11769C(G3923G))|(ORF1a_polyprotein:T11769C(G3923G)) | 2035 | 0.999 | 1 | 0.999 | 0 | 0.999 | ||||||
| 12407 | A12407G|(ORF1ab_polyprotein:A12142G(I4048V))|(ORF1a_polyprotein:A12142G(I4048V)) | 1378 | 0.778 | 1 | 0.778 | 0 | 0.778 | ||||||
| 12522 | G12522T|(ORF1ab_polyprotein:G12257T(G4086V))|(ORF1a_polyprotein:G12257T(G4086V)) | 1 | 0.001 | 286 | 0.168 | 2 | 0.168 | 0.001 | 0.169 | ||||
| 12605 | A12605G|(ORF1ab_polyprotein:A12340G(I4114V))|(ORF1a_polyprotein:A12340G(I4114V)) | 4 | 0.000 | 4039 | 0.998 | 2 | 0.998 | 0.0 | 0.998 | ||||
| 12747 | C12747A|(ORF1ab_polyprotein:C12482A(T4161N))|(ORF1a_polyprotein:C12482A(T4161N)) | 3731 | 0.646 | 1 | 0.646 | 0 | 0.646 | ||||||
| linkedubiq | 12789 | C12789T|(ORF1ab_polyprotein:C12524T(T4175I))|(ORF1a_polyprotein:C12524T(T4175I)) | 7180 | 0.642 | 5429 | 0.999 | 2 | 0.999 | 0.642 | 1.641 | |||
| 12791 | A12791C|(ORF1ab_polyprotein:A12526C(K4176Q))|(ORF1a_polyprotein:A12526C(K4176Q)) | 7 | 0.001 | 5342 | 0.983 | 2 | 0.983 | 0.001 | 0.984 | ||||
| 12808 | A12808G|(ORF1ab_polyprotein:A12543G(V4181V))|(ORF1a_polyprotein:A12543G(V4181V)) | 3 | 0.000 | 5763 | 0.999 | 2 | 0.999 | 0.0 | 0.999 | ||||
| 13124 | G13124-13124del|(ORF1ab_polyprotein:12859-12859del(4287fs))|(ORF1a_polyprotein:12859-12859del(4287fs)) | 116 | 0.342 | 1 | 0.342 | 0 | 0.342 | ||||||
| 13222 | A13222G|(ORF1ab_polyprotein:A12957G(E4319E))|(ORF1a_polyprotein:A12957G(E4319E)) | 655 | 0.180 | 1 | 0.18 | 0 | 0.18 | ||||||
| 13365 | A13365G|(ORF1ab_polyprotein:A13100G(N4367S))|(ORF1a_polyprotein:A13100G(N4367S)) | 481 | 0.169 | 1 | 0.169 | 0 | 0.169 | ||||||
| linked | 13482 | A13482G|(ORF1ab_polyprotein:A13218G(V4406V))|(ORF1a_polyprotein:A13217G(*4406*)) | 1 | 0.001 | 1 | 0.001 | 0 | 0.001 | |||||
| linked | 13483 | A13483G|(ORF1ab_polyprotein:AGT13219-13221GGG(S4407G))|(ORF1a_polyprotein:A13218G(*4406*)) | 1 | 0.002 | 1 | 0.002 | 0 | 0.002 | |||||
| linked | 13485 | T13485G|(ORF1ab_polyprotein:AGT13219-13221GGG(S4407G)) | 1 | 0.002 | 1 | 0.002 | 0 | 0.002 | |||||
| linked | 13487 | C13487G|(ORF1ab_polyprotein:C13223G(A4408G)) | 1 | 0.002 | 1 | 0.002 | 0 | 0.002 | |||||
| linked | 13490 | C13490G|(ORF1ab_polyprotein:C13226G(A4409G)) | 1 | 0.003 | 1 | 0.003 | 0 | 0.003 | |||||
| linked | 13494 | T13494G|(ORF1ab_polyprotein:T13230G(R4410R)) | 1 | 0.008 | 1 | 0.008 | 0 | 0.008 | |||||
| 13498 | A13498C|(ORF1ab_polyprotein:A13234C(T4412P)) | 1 | 0.250 | 1 | 0.25 | 0 | 0.25 | ||||||
| 13504 | T13504G|(ORF1ab_polyprotein:TGC13240-13242GGG(C4414G)) | 1 | 0.333 | 1 | 0.333 | 0 | 0.333 | ||||||
| 13506 | C13506G|(ORF1ab_polyprotein:TGC13240-13242GGG(C4414G)) | 1 | 0.167 | 1 | 0.167 | 0 | 0.167 | ||||||
| linked | 13510 | A13510G|(ORF1ab_polyprotein:A13246G(T4416A)) | 1 | 0.016 | 1 | 0.016 | 0 | 0.016 | |||||
| 13575 | T13575C|(ORF1ab_polyprotein:T13311C(F4437F)) | 43 | 0.093 | 1 | 0.093 | 0 | 0.093 | ||||||
| 13670 | T13670C|(ORF1ab_polyprotein:T13406C(F4469S)) | 20 | 0.067 | 1 | 0.067 | 0 | 0.067 | ||||||
| 13814 | C13814T|(ORF1ab_polyprotein:C13550T(A4517V)) | 1 | 0.001 | 1719 | 0.347 | 2 | 0.347 | 0.001 | 0.348 | ||||
| 13827 | TGCTTTAAGGCATTTT13827-13842del|(ORF1ab_polyprotein:13563-13578del(4521fs)) | 1718 | 0.307 | 1 | 0.307 | 0 | 0.307 | ||||||
| 13926 | GT13926-13927del|(ORF1ab_polyprotein:13662-13663del(4554fs)) | 4408 | 0.427 | 1 | 0.427 | 0 | 0.427 | ||||||
| 13930 | G13930A|(ORF1ab_polyprotein:G13666A(D4556N)) | 4403 | 0.431 | 1 | 0.431 | 0 | 0.431 | ||||||
| 13984 | G13984A|(ORF1ab_polyprotein:G13720A(V4574I)) | 4016 | 0.413 | 1 | 0.413 | 0 | 0.413 | ||||||
| 13996 | TTG13996-13998del|(ORF1ab_polyprotein:13732-13734del(L4578del)) | 1221 | 0.133 | 1 | 0.133 | 0 | 0.133 | ||||||
| 14032 | RATG13 | A14032G|(ORF1ab_polyprotein:A13768G(N4590D)) | 10828 | 0.997 | 1 | 0.997 | 0 | 0.997 | |||||
| 14120 | C14120T|(ORF1ab_polyprotein:C13856T(P4619L)) | 3262 | 0.255 | 1 | 0.255 | 0 | 0.255 | ||||||
| 14131 | G14131A|(ORF1ab_polyprotein:G13867A(V4623I)) | 4966 | 0.368 | 1 | 0.368 | 0 | 0.368 | ||||||
| 14173 | TTAACC14173-14178del|(ORF1ab_polyprotein:13909-13914del(LT4637-4638del)) | 3806 | 0.212 | 1 | 0.212 | 0 | 0.212 | ||||||
| 14201 | A14201T|(ORF1ab_polyprotein:A13937T(E4646V)) | 4082 | 0.215 | 1 | 0.215 | 0 | 0.215 | ||||||
| 14208 | T14208C|(ORF1ab_polyprotein:T13944C(H4648H)) | 4924 | 0.240 | 1 | 0.24 | 0 | 0.24 | ||||||
| 14244 | G14244A|(ORF1ab_polyprotein:G13980A(W4660*)) | 5854 | 0.251 | 1 | 0.251 | 0 | 0.251 | ||||||
| 14268 | G14268A|(ORF1ab_polyprotein:G14004A(T4668T)) | 1 | 0.000 | 2367 | 0.095 | 2 | 0.095 | 0.0 | 0.095 | ||||
| 14322 | C14322A|(ORF1ab_polyprotein:C14058A(Y4686*)) | 5563 | 0.265 | 1 | 0.265 | 0 | 0.265 | ||||||
| ubiq | 14408 | Delta | C14408T|(ORF1ab_polyprotein:C14144T(P4715L)) | 2953 | 0.999 | 4423 | 0.998 | 6283 | 0.998 | 3 | 0.998 | 1.9969999999999999 | 2.995 |
| 14762 | TC14762-14763del|(ORF1ab_polyprotein:14498-14499del(4833fs)) | 27 | 0.160 | 1 | 0.16 | 0 | 0.16 | ||||||
| 14856 | A14856G|(ORF1ab_polyprotein:A14592G(V4864V)) | 141 | 0.834 | 1 | 0.834 | 0 | 0.834 | ||||||
| 15324 | C15324T|(ORF1ab_polyprotein:C15060T(N5020N)) | 22 | 0.262 | 1 | 0.262 | 0 | 0.262 | ||||||
| 15354 | T15354A|(ORF1ab_polyprotein:T15090A(L5030L)) | 59 | 0.808 | 1 | 0.808 | 0 | 0.808 | ||||||
| 15372 | G15372A|(ORF1ab_polyprotein:G15108A(T5036T)) | 11 | 0.128 | 1 | 0.128 | 0 | 0.128 | ||||||
| 15614 | A15614G|(ORF1ab_polyprotein:A15350G(H5117R)) | 8567 | 0.483 | 1 | 0.483 | 0 | 0.483 | ||||||
| 15688 | C15688T|(ORF1ab_polyprotein:C15424T(R5142C)) | 4064 | 0.124 | 1 | 0.124 | 0 | 0.124 | ||||||
| 16141 | G16141T|(ORF1ab_polyprotein:G15877T(D5293Y)) | 3 | 0.000 | 7 | 0.000 | 8009 | 0.193 | 3 | 0.193 | 0.0 | 0.193 | ||
| 16374 | T16374C|(ORF1ab_polyprotein:T16110C(N5370N)) | 1 | 0.001 | 1 | 0.000 | 941 | 0.080 | 3 | 0.08 | 0.001 | 0.081 | ||
| 16466 | C16466T|(ORF1ab_polyprotein:C16202T(P5401L)) | 1 | 0.000 | 7855 | 0.758 | 2 | 0.758 | 0.0 | 0.758 | ||||
| 16726 | C16726T|(ORF1ab_polyprotein:C16462T(H5488Y)) | 4184 | 0.689 | 1 | 0.689 | 0 | 0.689 | ||||||
| 17032 | G17032A|(ORF1ab_polyprotein:G16768A(V5590I)) | 5655 | 0.982 | 1 | 0.982 | 0 | 0.982 | ||||||
| 17050 | G17050A|(ORF1ab_polyprotein:G16786A(V5596I)) | 13703 | 0.958 | 1 | 0.958 | 0 | 0.958 | ||||||
| 17125 | C17125G|(ORF1ab_polyprotein:CTC16861-16863GGC(L5621G)) | 16393 | 0.999 | 1 | 0.999 | 0 | 0.999 | ||||||
| 17126 | T17126G|(ORF1ab_polyprotein:CTC16861-16863GGC(L5621G)) | 16393 | 0.999 | 1 | 0.999 | 0 | 0.999 | ||||||
| 17373 | RATG13 | C17373T|(ORF1ab_polyprotein:C17109T(A5703A)) | 3361 | 0.944 | 1 | 0.944 | 0 | 0.944 | |||||
| 17402 | C17402-17402del|(ORF1ab_polyprotein:17138-17138del(5713fs)) | 484 | 0.086 | 1 | 0.086 | 0 | 0.086 | ||||||
| 17456 | C17456T|(ORF1ab_polyprotein:C17192T(A5731V)) | 636 | 0.073 | 1 | 0.073 | 0 | 0.073 | ||||||
| 17497 | T17497C|(ORF1ab_polyprotein:T17233C(Y5745H)) | 7439 | 0.952 | 1 | 0.952 | 0 | 0.952 | ||||||
| 17619 | T17619A|(ORF1ab_polyprotein:T17355A(L5785L)) | 563 | 0.083 | 1 | 0.083 | 0 | 0.083 | ||||||
| 18132 | T18132C|(ORF1ab_polyprotein:T17868C(T5956T)) | 1 | 1.000 | 1 | 1.0 | 0 | 1.0 | ||||||
| 18354 | A18354G|(ORF1ab_polyprotein:A18090G(L6030L)) | 2920 | 0.919 | 1 | 0.919 | 0 | 0.919 | ||||||
| 18411 | T18411C|(ORF1ab_polyprotein:T18147C(Y6049Y)) | 2647 | 0.919 | 1 | 0.919 | 0 | 0.919 | ||||||
| 18487 | A18487T|(ORF1ab_polyprotein:A18223T(I6075L)) | 3173 | 0.929 | 1 | 0.929 | 0 | 0.929 | ||||||
| 18517 | A18517C|(ORF1ab_polyprotein:A18253C(N6085H)) | 1 | 0.001 | 3056 | 0.930 | 2 | 0.93 | 0.001 | 0.931 | ||||
| 18615 | G18615T|(ORF1ab_polyprotein:G18351T(L6117F)) | 1515 | 0.127 | 1 | 0.127 | 0 | 0.127 | ||||||
| 18788 | C18788T|(ORF1ab_polyprotein:C18524T(T6175I)) | 1 | 0.000 | 17682 | 0.837 | 2 | 0.837 | 0.0 | 0.837 | ||||
| 18792 | T18792-18792del|(ORF1ab_polyprotein:18528-18528del(6176fs)) | 3369 | 0.161 | 1 | 0.161 | 0 | 0.161 | ||||||
| 18840 | A18840G|(ORF1ab_polyprotein:A18576G(A6192A)) | 3 | 0.000 | 13109 | 0.660 | 2 | 0.66 | 0.0 | 0.66 | ||||
| 18927 | RATG13 | T18927C|(ORF1ab_polyprotein:T18663C(Y6221Y)) | 64 | 0.416 | 1 | 0.416 | 0 | 0.416 | |||||
| 18929 | C18929T|(ORF1ab_polyprotein:C18665T(P6222L)) | 29 | 0.218 | 1 | 0.218 | 0 | 0.218 | ||||||
| 19041 | C19041T|(ORF1ab_polyprotein:C18777T(N6259N)) | 118 | 0.445 | 1 | 0.445 | 0 | 0.445 | ||||||
| 19220 | C19220T|(ORF1ab_polyprotein:C18956T(A6319V)) | 172 | 0.905 | 1 | 0.905 | 0 | 0.905 | ||||||
| 19584 | T19584C|(ORF1ab_polyprotein:T19320C(D6440D)) | 923 | 0.081 | 1 | 0.081 | 0 | 0.081 | ||||||
| 19605 | T19605C|(ORF1ab_polyprotein:T19341C(T6447T)) | 749 | 0.067 | 1 | 0.067 | 0 | 0.067 | ||||||
| 19619 | AG19619-19620del|(ORF1ab_polyprotein:19355-19356del(6452fs)) | 655 | 0.051 | 1 | 0.051 | 0 | 0.051 | ||||||
| 19960 | A19960C|(ORF1ab_polyprotein:A19696C(T6566P)) | 5 | 1.000 | 1 | 1.0 | 0 | 1.0 | ||||||
| 19963 | A19963G|(ORF1ab_polyprotein:A19699G(I6567V)) | 5 | 1.000 | 1 | 1.0 | 0 | 1.0 | ||||||
| 20118 | A20118G|(ORF1ab_polyprotein:A19854G(T6618T)) | 1 | 0.071 | 1 | 0.071 | 0 | 0.071 | ||||||
| 20120 | T20120C|(ORF1ab_polyprotein:T19856C(L6619S)) | 1 | 0.071 | 1 | 0.071 | 0 | 0.071 | ||||||
| 20122 | A20122G|(ORF1ab_polyprotein:A19858G(I6620V)) | 1 | 0.071 | 1 | 0.071 | 0 | 0.071 | ||||||
| 20122 | A20122G|(ORF1ab_polyprotein:ATT19858-19860GTG(I6620V)) | 1 | 0.071 | 1 | 0.071 | 0 | 0.071 | ||||||
| 20124 | T20124G|(ORF1ab_polyprotein:ATT19858-19860GTG(I6620V)) | 1 | 0.071 | 1 | 0.071 | 0 | 0.071 | ||||||
| 20295 | T20295C|(ORF1ab_polyprotein:T20031C(Y6677Y)) | 1112 | 0.437 | 1 | 0.437 | 0 | 0.437 | ||||||
| 20393 | RATG13 | T20393C|(ORF1ab_polyprotein:T20129C(F6710S)) | 1313 | 0.434 | 1 | 0.434 | 0 | 0.434 | |||||
| 20400 | A20400C|(ORF1ab_polyprotein:A20136C(E6712D)) | 1305 | 0.430 | 1 | 0.43 | 0 | 0.43 | ||||||
| 20404 | C20404T|(ORF1ab_polyprotein:C20140T(P6714S)) | 2749 | 0.999 | 1 | 0.999 | 0 | 0.999 | ||||||
| 20407 | T20407G|(ORF1ab_polyprotein:T20143G(F6715V)) | 1440 | 0.516 | 1 | 0.516 | 0 | 0.516 | ||||||
| 20702 | A20702C|(ORF1ab_polyprotein:A20438C(Y6813S)) | 1 | 0.125 | 1 | 0.125 | 0 | 0.125 | ||||||
| 20719 | RATG13 | C20719T|(ORF1ab_polyprotein:C20455T(L6819L)) | 562 | 0.181 | 1 | 0.181 | 0 | 0.181 | |||||
| linked | 20736 | C20736A|(ORF1ab_polyprotein:C20472A(D6824E)) | 44 | 0.006 | 1 | 0.006 | 0 | 0.006 | |||||
| linked | 20745 | T20745G|(ORF1ab_polyprotein:T20481G(N6827K)) | 4 | 0.000 | 1 | 0.0 | 0 | 0.0 | |||||
| 20892 | T20892A|(ORF1ab_polyprotein:T20628A(V6876V)) | 2788 | 0.235 | 1 | 0.235 | 0 | 0.235 | ||||||
| 20976 | T20976C|(ORF1ab_polyprotein:T20712C(D6904D)) | 5369 | 0.389 | 1 | 0.389 | 0 | 0.389 | ||||||
| 20987 | C20987T|(ORF1ab_polyprotein:C20723T(T6908I)) | 1170 | 0.106 | 1 | 0.106 | 0 | 0.106 | ||||||
| 21137 | A21137G|(ORF1ab_polyprotein:A20873G(K6958R)) | 853 | 0.999 | 1 | 0.999 | 0 | 0.999 | ||||||
| 21212 | G21212T|(ORF1ab_polyprotein:G20948T(G6983V)) | 213 | 0.246 | 1 | 0.246 | 0 | 0.246 | ||||||
| 21225 | G21225T|(ORF1ab_polyprotein:G20961T(W6987C)) | 206 | 0.243 | 1 | 0.243 | 0 | 0.243 | ||||||
| 21363 | RATG13 | T21363C|(ORF1ab_polyprotein:T21099C(N7033N)) | 1 | 0.002 | 116 | 0.212 | 2 | 0.212 | 0.002 | 0.214 | |||
| 21384 | T21384C|(ORF1ab_polyprotein:T21120C(Y7040Y)) | 633 | 0.995 | 1 | 0.995 | 0 | 0.995 | ||||||
| 21411 | C21411T|(ORF1ab_polyprotein:C21147T(P7049P)) | 257 | 0.289 | 1 | 0.289 | 0 | 0.289 | ||||||
| 21602 | CAGTGTGTTAATCTTACAACCAGA21602-21625del|(surface_glycoprotein:40-63del(QCVNLTTR14-21del)) | 328 | 0.313 | 1 | 0.313 | 0 | 0.313 | ||||||
| 21602 | CAGTGTGTTAATCTTACAACCAGAACTCA21602-21630del|(surface_glycoprotein:CAGTGTGTTAATCTTACAACCAGAACTCAATTACCC40-75ATCdel(QCVNLTTRTQLP14-25Idel)) | 721 | 0.687 | 1 | 0.687 | 0 | 0.687 | ||||||
| 21633 | TACC21633-21636del|(surface_glycoprotein:CAGTGTGTTAATCTTACAACCAGAACTCAATTACCC40-75ATCdel(QCVNLTTRTQLP14-25Idel)) | 721 | 0.477 | 1 | 0.477 | 0 | 0.477 | ||||||
| 21642 | C21642T|(surface_glycoprotein:C80T(A27V)) | 818 | 0.160 | 1 | 0.16 | 0 | 0.16 | ||||||
| 21651 | A21651C|(surface_glycoprotein:A89C(N30T)) | 1 | 0.000 | 1415 | 0.227 | 2 | 0.227 | 0.0 | 0.227 | ||||
| 21657 | RATG13 | T21657C|(surface_glycoprotein:T95C(F32S)) | 6439 | 0.787 | 1 | 0.787 | 0 | 0.787 | |||||
| 21707 | C21707T|(surface_glycoprotein:C145T(H49Y)) | 15162 | 0.997 | 1 | 0.997 | 0 | 0.997 | ||||||
| 21752 | T21752G|(surface_glycoprotein:TGG190-192GAG(W64E)) | 12011 | 0.998 | 1 | 0.998 | 0 | 0.998 | ||||||
| 21753 | G21753A|(surface_glycoprotein:TGG190-192GAG(W64E)) | 12011 | 0.998 | 1 | 0.998 | 0 | 0.998 | ||||||
| linkedubiq | 21765 | TACATG21765-21770del|(surface_glycoprotein:ATACATGTC202-210ATCdel(IHV68-70Idel)) | 2976 | 0.999 | 3104 | 0.998 | 10256 | 0.999 | 3 | 0.999 | 1.9969999999999999 | 2.996 | |
| 21777 | G21777A|(surface_glycoprotein:G215A(G72E)) | 8069 | 0.765 | 1 | 0.765 | 0 | 0.765 | ||||||
| 21783 | ATG21783-21785del|(surface_glycoprotein:AATGGT220-225AGTdel(NG74-75Sdel)) | 2049 | 0.198 | 1 | 0.198 | 0 | 0.198 | ||||||
| 21789 | RATG13 | C21789T|(surface_glycoprotein:C227T(T76I)) | 9823 | 0.998 | 1 | 0.998 | 0 | 0.998 | |||||
| 21869 | G21869A|(surface_glycoprotein:G307A(G103S)) | 1608 | 0.217 | 1 | 0.217 | 0 | 0.217 | ||||||
| 21967 | TTG21967-21969del|(surface_glycoprotein:TTTTGT403-408TTTdel(FC135-136Fdel)) | 693 | 0.391 | 1 | 0.391 | 0 | 0.391 | ||||||
| 21977 | C21977-21977del|(surface_glycoprotein:CCATTTTTGGGTGTTTATTACCACAAAAACAACAAAAGTTGG415-456CATdel(PFLGVYYHKNNKSW139-152Hdel)) | 273 | 0.164 | 1 | 0.164 | 0 | 0.164 | ||||||
| 21977 | C21977A|(surface_glycoprotein:C415A(P139T)) | 980 | 0.589 | 1 | 0.589 | 0 | 0.589 | ||||||
| 21981 | T21981C|(surface_glycoprotein:T419C(F140S)) | 975 | 0.781 | 1 | 0.781 | 0 | 0.781 | ||||||
| 21981 | TTTTGGGTGTTTATTACCACAAAAACAACAAAAGTTGG21981-22018del|(surface_glycoprotein:CCATTTTTGGGTGTTTATTACCACAAAAACAACAAAAGTTGG415-456CATdel(PFLGVYYHKNNKSW139-152Hdel)) | 273 | 0.307 | 1 | 0.307 | 0 | 0.307 | ||||||
| linked | 21987 | G21987A|(surface_glycoprotein:G425A(G142D)) | 787 | 0.999 | 955 | 0.777 | 2 | 0.777 | 0.999 | 1.776 | |||
| 21994 | TTACCACAAAAACAACAAAAGTTGGATGGAAAGTGAGTTCAGAGT21994-22038del|(surface_glycoprotein:TATTACCACAAAAACAACAAAAGTTGGATGGAAAGTGAGTTCAGAGTT430-477TATdel(YYHKNNKSWMESEFRV144-159Ydel)) | 602 | 0.678 | 1 | 0.678 | 0 | 0.678 | ||||||
| 22028 | 22028-insertG|(surface_glycoprotein:466insertG(156fs)) | 608 | 0.469 | 1 | 0.469 | 0 | 0.469 | ||||||
| 22028 | 22028-insertG|(surface_glycoprotein:GAGTTCAGAGTT466-477GGAGTTTCTdel(EFRV156-159GVSdel)) | 71 | 0.055 | 1 | 0.055 | 0 | 0.055 | ||||||
| 22031 | 22031-insertT|(surface_glycoprotein:GAGTTCAGAGTT466-477GGAGTTTCTdel(EFRV156-159GVSdel)) | 71 | 0.055 | 1 | 0.055 | 0 | 0.055 | ||||||
| 22033 | C22033T|(surface_glycoprotein:C471T(F157F)) | 609 | 0.470 | 1 | 0.47 | 0 | 0.47 | ||||||
| 22034 | AGAGT22034-22038del|(surface_glycoprotein:GAGTTCAGAGTT466-477GGAGTTTCTdel(EFRV156-159GVSdel)) | 71 | 0.055 | 1 | 0.055 | 0 | 0.055 | ||||||
| 22035 | GAGT22035-22038del|(surface_glycoprotein:473-476del(158fs)) | 609 | 0.469 | 1 | 0.469 | 0 | 0.469 | ||||||
| 22048 | T22048A|(surface_glycoprotein:T486A(S162R)) | 723 | 0.378 | 1 | 0.378 | 0 | 0.378 | ||||||
| 22102 | A22102C|(surface_glycoprotein:A540C(E180D)) | 1184 | 0.492 | 1 | 0.492 | 0 | 0.492 | ||||||
| 22103 | G22103A|(surface_glycoprotein:G541A(G181R)) | 1161 | 0.488 | 1 | 0.488 | 0 | 0.488 | ||||||
| 22108 | A22108C|(surface_glycoprotein:A546C(K182N)) | 1208 | 0.497 | 1 | 0.497 | 0 | 0.497 | ||||||
| 22122 | A22122C|(surface_glycoprotein:A560C(K187T)) | 2483 | 0.998 | 1 | 0.998 | 0 | 0.998 | ||||||
| 22161 | A22161G|(surface_glycoprotein:A599G(Y200C)) | 1999 | 0.604 | 1 | 0.604 | 0 | 0.604 | ||||||
| 22206 | A22206G|(surface_glycoprotein:A644G(D215G)) | 2548 | 0.999 | 1 | 0.999 | 0 | 0.999 | ||||||
| 22216 | RATG13 | G22216T|(surface_glycoprotein:G654T(Q218H)) | 1940 | 0.778 | 1 | 0.778 | 0 | 0.778 | |||||
| 22272 | G22272T|(surface_glycoprotein:G710T(R237M)) | 1932 | 0.998 | 1 | 0.998 | 0 | 0.998 | ||||||
| 22285 | ACTTGCTTTACATAG22285-22299del|(surface_glycoprotein:TTACTTGCTTTACATAGA721-738TTAdel(LLALHR241-246Ldel)) | 1376 | 0.917 | 1 | 0.917 | 0 | 0.917 | ||||||
| 22286 | CTTGCTTTAC22286-22295del|(surface_glycoprotein:CTTGCTTTACATAGAAGT724-741ATTdel(LALHRS242-247Idel)) | 121 | 0.081 | 1 | 0.081 | 0 | 0.081 | ||||||
| 22298 | AGAAG22298-22302del|(surface_glycoprotein:CTTGCTTTACATAGAAGT724-741ATTdel(LALHRS242-247Idel)) | 121 | 0.081 | 1 | 0.081 | 0 | 0.081 | ||||||
| 22304 | T22304C|(surface_glycoprotein:T742C(Y248H)) | 2045 | 1.000 | 1 | 1.0 | 0 | 1.0 | ||||||
| 22311 | C22311A|(surface_glycoprotein:C749A(T250N)) | 1 | 0.003 | 2232 | 0.999 | 2 | 0.999 | 0.003 | 1.002 | ||||
| 22335 | G22335T|(surface_glycoprotein:G773T(W258L)) | 209 | 0.076 | 1 | 0.076 | 0 | 0.076 | ||||||
| 22399 | T22399C|(surface_glycoprotein:T837C(Y279Y)) | 208 | 0.079 | 1 | 0.079 | 0 | 0.079 | ||||||
| 22456 | A22456G|(surface_glycoprotein:A894G(E298E)) | 102 | 0.222 | 1 | 0.222 | 0 | 0.222 | ||||||
| 22520 | G22520A|(surface_glycoprotein:G958A(V320I)) | 93 | 0.949 | 1 | 0.949 | 0 | 0.949 | ||||||
| 22596 | C22596G|(surface_glycoprotein:C1034G(T345S)) | 57 | 0.983 | 1 | 0.983 | 0 | 0.983 | ||||||
| 22599 | RATG13 | G22599C|(surface_glycoprotein:G1037C(R346T)) | 58 | 1.000 | 1 | 1.0 | 0 | 1.0 | |||||
| 22622 | A22622G|(surface_glycoprotein:A1060G(N354D)) | 21 | 0.955 | 1 | 0.955 | 0 | 0.955 | ||||||
| 22633 | A22633C|(surface_glycoprotein:A1071C(R357S)) | 21 | 0.955 | 1 | 0.955 | 0 | 0.955 | ||||||
| 22661 | G22661T|(surface_glycoprotein:G1099T(V367F)) | 18 | 0.947 | 1 | 0.947 | 0 | 0.947 | ||||||
| 22676 | G22676T|(surface_glycoprotein:G1114T(A372S)) | 19 | 0.864 | 1 | 0.864 | 0 | 0.864 | ||||||
| 22683 | T22683A|(surface_glycoprotein:T1121A(F374Y)) | 2 | 0.087 | 1 | 0.087 | 0 | 0.087 | ||||||
| 22712 | C22712A|(surface_glycoprotein:C1150A(P384T)) | 2 | 0.111 | 1 | 0.111 | 0 | 0.111 | ||||||
| linkedubiq | 22770 | G22770A|(surface_glycoprotein:G1208A(R403K)) | 9 | 0.900 | 5 | 1.000 | 2 | 1.0 | 0.9 | 1.9 | |||
| 22775 | G22775A|(surface_glycoprotein:GAT1213-1215AGT(D405S)) | 3 | 0.750 | 1 | 0.75 | 0 | 0.75 | ||||||
| 22776 | A22776G|(surface_glycoprotein:GAT1213-1215AGT(D405S)) | 3 | 0.750 | 1 | 0.75 | 0 | 0.75 | ||||||
| 22786 | A22786T|(surface_glycoprotein:A1224T(R408S)) | 5 | 0.357 | 1 | 0.357 | 0 | 0.357 | ||||||
| 22812 | A22812C|(surface_glycoprotein:A1250C(K417T)) | 12 | 0.111 | 1 | 0.111 | 0 | 0.111 | ||||||
| 22879 | C22879A|(surface_glycoprotein:C1317A(N439K)) | 26 | 0.117 | 1 | 0.117 | 0 | 0.117 | ||||||
| 22881 | A22881G|(surface_glycoprotein:A1319G(N440S)) | 26 | 0.121 | 1 | 0.121 | 0 | 0.121 | ||||||
| 22896 | T22896C|(surface_glycoprotein:T1334C(V445A)) | 22 | 0.109 | 1 | 0.109 | 0 | 0.109 | ||||||
| 22899 | G22899A|(surface_glycoprotein:G1337A(G446D)) | 22 | 0.106 | 1 | 0.106 | 0 | 0.106 | ||||||
| 22907 | T22907C|(surface_glycoprotein:TAT1345-1347CGT(Y449R)) | 21 | 0.102 | 1 | 0.102 | 0 | 0.102 | ||||||
| 22908 | A22908G|(surface_glycoprotein:TAT1345-1347CGT(Y449R)) | 21 | 0.104 | 1 | 0.104 | 0 | 0.104 | ||||||
| 22917 | T22917A|(surface_glycoprotein:T1355A(L452Q)) | 18 | 0.087 | 1 | 0.087 | 0 | 0.087 | ||||||
| 22920 | A22920T|(surface_glycoprotein:A1358T(Y453F)) | 25 | 0.114 | 1 | 0.114 | 0 | 0.114 | ||||||
| 22926 | T22926G|(surface_glycoprotein:T1364G(L455W)) | 19 | 0.091 | 1 | 0.091 | 0 | 0.091 | ||||||
| ubiq | 22928 | T22928C|(surface_glycoprotein:T1366C(F456L)) | 257 | 1.000 | 201 | 0.962 | 2 | 0.962 | 1.0 | 1.962 | |||
| linkedubiq | 22942 | T22942A|(surface_glycoprotein:T1380A(N460K)) | 286 | 1.000 | 231 | 0.996 | 2 | 0.996 | 1.0 | 1.996 | |||
| linkedubiq | 22992 | G22992A|(surface_glycoprotein:G1430A(S477N)) | 203 | 1.000 | 91 | 1.000 | 1695 | 0.999 | 3 | 0.999 | 2.0 | 2.999 | |
| 23019 | T23019C|(surface_glycoprotein:T1457C(F486S)) | 2591 | 0.965 | 1 | 0.965 | 0 | 0.965 | ||||||
| 23048 | G23048A|(surface_glycoprotein:GGT1486-1488ACT(G496T)) | 5549 | 0.876 | 1 | 0.876 | 0 | 0.876 | ||||||
| 23049 | G23049C|(surface_glycoprotein:G1487C(G496A)) | 765 | 0.121 | 1 | 0.121 | 0 | 0.121 | ||||||
| 23049 | G23049C|(surface_glycoprotein:GGT1486-1488ACT(G496T)) | 5549 | 0.876 | 1 | 0.876 | 0 | 0.876 | ||||||
| 23054 | RATG13 | C23054T|(surface_glycoprotein:CAA1492-1494TAC(Q498Y)) | 6317 | 0.994 | 1 | 0.994 | 0 | 0.994 | |||||
| 23056 | RATG13 | A23056C|(surface_glycoprotein:CAA1492-1494TAC(Q498Y)) | 6317 | 0.994 | 1 | 0.994 | 0 | 0.994 | |||||
| 23057 | C23057T|(surface_glycoprotein:C1495T(P499S)) | 5547 | 0.866 | 1 | 0.866 | 0 | 0.866 | ||||||
| 23060 | A23060T|(surface_glycoprotein:A1498T(T500S)) | 840 | 0.101 | 1 | 0.101 | 0 | 0.101 | ||||||
| 23064 | A23064C|(surface_glycoprotein:A1502C(N501T)) | 7439 | 0.890 | 1 | 0.89 | 0 | 0.89 | ||||||
| 23073 | G23073A|(surface_glycoprotein:G1511A(G504D)) | 1 | 0.004 | 8217 | 0.999 | 2 | 0.999 | 0.004 | 1.003 | ||||
| linked | 23075 | RATG13 | T23075C|(surface_glycoprotein:T1513C(Y505H)) | 262 | 1.000 | 1445 | 0.999 | 7190 | 0.871 | 3 | 0.871 | 1.999 | 2.87 |
| 23224 | G23224T|(surface_glycoprotein:G1662T(E554D)) | 14824 | 0.906 | 1 | 0.906 | 0 | 0.906 | ||||||
| 23236 | G23236T|(surface_glycoprotein:G1674T(K558N)) | 15090 | 0.905 | 1 | 0.905 | 0 | 0.905 | ||||||
| ubiq | 23403 | Delta | A23403G|(surface_glycoprotein:A1841G(D614G)) | 2240 | 1.000 | 4036 | 0.999 | 2 | 0.999 | 1.0 | 1.999 | ||
| 23452 | T23452A|(surface_glycoprotein:T1890A(T630T)) | 1968 | 0.446 | 1 | 0.446 | 0 | 0.446 | ||||||
| 23502 | C23502T|(surface_glycoprotein:C1940T(A647V)) | 1 | 0.001 | 1358 | 0.408 | 2 | 0.408 | 0.001 | 0.409 | ||||
| 23518 | G23518A|(surface_glycoprotein:G1956A(G652G)) | 1254 | 0.401 | 1 | 0.401 | 0 | 0.401 | ||||||
| linkedubiq | 23525 | C23525T|(surface_glycoprotein:C1963T(H655Y)) | 1525 | 0.995 | 2772 | 0.999 | 2 | 0.999 | 0.995 | 1.994 | |||
| 23593 | G23593C|(surface_glycoprotein:G2031C(Q677H)) | 336 | 0.387 | 1 | 0.387 | 0 | 0.387 | ||||||
| 23594 | A23594C|(surface_glycoprotein:A2032C(T678P)) | 83 | 0.102 | 1 | 0.102 | 0 | 0.102 | ||||||
| linkedubiq | 23604 | Delta | C23604G|(surface_glycoprotein:C2042G(P681R)) | 76 | 1.000 | 50 | 1.000 | 319 | 1.000 | 3 | 1.0 | 2.0 | 3.0 |
| 23607 | G23607-23607del|(surface_glycoprotein:2045-2045del(682fs)) | 39 | 0.114 | 1 | 0.114 | 0 | 0.114 | ||||||
| 23608 | G23608T|(surface_glycoprotein:G2046T(R682R)) | 29 | 0.085 | 1 | 0.085 | 0 | 0.085 | ||||||
| 23610 | G23610A|(surface_glycoprotein:G2048A(R683Q)) | 339 | 0.994 | 1 | 0.994 | 0 | 0.994 | ||||||
| 23946 | A23946C|(surface_glycoprotein:A2384C(K795T)) | 1 | 0.004 | 372 | 0.583 | 2 | 0.583 | 0.004 | 0.587 | ||||
| 23977 | A23977G|(surface_glycoprotein:A2415G(I805M)) | 381 | 0.477 | 1 | 0.477 | 0 | 0.477 | ||||||
| 24002 | A24002C|(surface_glycoprotein:A2440C(K814Q)) | 343 | 0.447 | 1 | 0.447 | 0 | 0.447 | ||||||
| 24032 | A24032G|(surface_glycoprotein:A2470G(N824D)) | 947 | 0.998 | 1 | 0.998 | 0 | 0.998 | ||||||
| 24044 | C24044T|(surface_glycoprotein:C2482T(L828F)) | 911 | 0.998 | 1 | 0.998 | 0 | 0.998 | ||||||
| 24061 | C24061T|(surface_glycoprotein:C2499T(F833F)) | 388 | 0.432 | 1 | 0.432 | 0 | 0.432 | ||||||
| 24068 | C24068G|(surface_glycoprotein:C2506G(Q836E)) | 370 | 0.462 | 1 | 0.462 | 0 | 0.462 | ||||||
| 24090 | A24090G|(surface_glycoprotein:A2528G(D843G)) | 386 | 0.464 | 1 | 0.464 | 0 | 0.464 | ||||||
| 24115 | T24115C|(surface_glycoprotein:T2553C(C851C)) | 260 | 0.261 | 1 | 0.261 | 0 | 0.261 | ||||||
| 24122 | A24122G|(surface_glycoprotein:A2560G(K854E)) | 416 | 0.399 | 1 | 0.399 | 0 | 0.399 | ||||||
| 24194 | T24194C|(surface_glycoprotein:T2632C(L878L)) | 623 | 0.998 | 1 | 0.998 | 0 | 0.998 | ||||||
| 24303 | A24303G|(surface_glycoprotein:A2741G(N914S)) | 495 | 0.853 | 1 | 0.853 | 0 | 0.853 | ||||||
| 24364 | T24364C|(surface_glycoprotein:T2802C(I934I)) | 598 | 1.000 | 1 | 1.0 | 0 | 1.0 | ||||||
| 24486 | G24486A|(surface_glycoprotein:G2924A(S975N)) | 1 | 0.000 | 8100 | 0.871 | 2 | 0.871 | 0.0 | 0.871 | ||||
| 24667 | A24667G|(surface_glycoprotein:A3105G(G1035G)) | 9478 | 0.564 | 1 | 0.564 | 0 | 0.564 | ||||||
| 24694 | A24694C|(surface_glycoprotein:A3132C(G1044G)) | 1 | 0.000 | 1656 | 0.099 | 2 | 0.099 | 0.0 | 0.099 | ||||
| 24721 | T24721G|(surface_glycoprotein:T3159G(P1053P)) | 1 | 0.000 | 3028 | 0.261 | 2 | 0.261 | 0.0 | 0.261 | ||||
| 24860 | A24860T|(surface_glycoprotein:A3298T(T1100S)) | 13653 | 0.768 | 1 | 0.768 | 0 | 0.768 | ||||||
| 24863 | C24863T|(surface_glycoprotein:C3301T(H1101Y)) | 1 | 0.000 | 1869 | 0.102 | 2 | 0.102 | 0.0 | 0.102 | ||||
| 24928 | G24928T|(surface_glycoprotein:G3366T(V1122V)) | 1 | 0.000 | 1735 | 0.110 | 2 | 0.11 | 0.0 | 0.11 | ||||
| 24943 | T24943C|(surface_glycoprotein:T3381C(D1127D)) | 1 | 0.000 | 3486 | 0.206 | 2 | 0.206 | 0.0 | 0.206 | ||||
| 24949 | A24949G|(surface_glycoprotein:A3387G(V1129V)) | 10196 | 0.629 | 1 | 0.629 | 0 | 0.629 | ||||||
| 25000 | C25000A|(surface_glycoprotein:C3438A(D1146E)) | 13032 | 0.877 | 1 | 0.877 | 0 | 0.877 | ||||||
| 25011 | A25011C|(surface_glycoprotein:A3449C(E1150A)) | 2 | 0.000 | 1867 | 0.113 | 2 | 0.113 | 0.0 | 0.113 | ||||
| 25020 | A25020C|(surface_glycoprotein:A3458C(D1153A)) | 1 | 0.000 | 12822 | 0.866 | 2 | 0.866 | 0.0 | 0.866 | ||||
| 25038 | A25038G|(surface_glycoprotein:A3476G(H1159R)) | 897 | 0.068 | 1 | 0.068 | 0 | 0.068 | ||||||
| 25057 | T25057G|(surface_glycoprotein:T3495G(D1165E)) | 4 | 0.001 | 9470 | 0.867 | 2 | 0.867 | 0.001 | 0.868 | ||||
| 25067 | A25067G|(surface_glycoprotein:A3505G(I1169V)) | 938 | 0.095 | 1 | 0.095 | 0 | 0.095 | ||||||
| 25094 | A25094G|(surface_glycoprotein:A3532G(N1178D)) | 3186 | 0.796 | 1 | 0.796 | 0 | 0.796 | ||||||
| 25162 | C25162A|(surface_glycoprotein:C3600A(L1200L)) | 7 | 0.011 | 286 | 0.997 | 2 | 0.997 | 0.011 | 1.008 | ||||
| 25163 | C25163A|(surface_glycoprotein:C3601A(Q1201K)) | 287 | 1.000 | 1 | 1.0 | 0 | 1.0 | ||||||
| 25208 | A25208G|(surface_glycoprotein:ATT3646-3648GCT(I1216A)) | 238 | 1.000 | 1 | 1.0 | 0 | 1.0 | ||||||
| 25209 | T25209C|(surface_glycoprotein:ATT3646-3648GCT(I1216A)) | 238 | 1.000 | 1 | 1.0 | 0 | 1.0 | ||||||
| 25254 | C25254T|(surface_glycoprotein:C3692T(T1231I)) | 323 | 1.000 | 1 | 1.0 | 0 | 1.0 | ||||||
| 25325 | A25325-25325del|(surface_glycoprotein:3763-3763del(1255fs)) | 87 | 0.407 | 1 | 0.407 | 0 | 0.407 | ||||||
| 25410 | A25410C|(ORF3a_protein:A18C(R6S)) | 13 | 0.197 | 1 | 0.197 | 0 | 0.197 | ||||||
| 25420 | RATG13 | A25420C|(ORF3a_protein:A28C(I10L)) | 40 | 0.667 | 1 | 0.667 | 0 | 0.667 | |||||
| 25444 | G25444T|(ORF3a_protein:G52T(G18C)) | 7 | 0.206 | 1 | 0.206 | 0 | 0.206 | ||||||
| 25451 | T25451C|(ORF3a_protein:T59C(I20T)) | 17 | 0.586 | 1 | 0.586 | 0 | 0.586 | ||||||
| 25469 | Delta | C25469T|(ORF3a_protein:C77T(S26L)) | 9 | 0.310 | 1 | 0.31 | 0 | 0.31 | |||||
| 25473 | TTT25473-25475del|(ORF3a_protein:GATTTT79-84GATdel(DF27-28Ddel)) | 9 | 0.346 | 1 | 0.346 | 0 | 0.346 | ||||||
| 25483 | G25483T|(ORF3a_protein:G91T(A31S)) | 12 | 0.429 | 1 | 0.429 | 0 | 0.429 | ||||||
| 25501 | A25501T|(ORF3a_protein:A109T(I37L)) | 19 | 0.432 | 1 | 0.432 | 0 | 0.432 | ||||||
| 25522 | G25522A|(ORF3a_protein:GGA130-132ATA(G44I)) | 22 | 0.478 | 1 | 0.478 | 0 | 0.478 | ||||||
| 25523 | G25523T|(ORF3a_protein:GGA130-132ATA(G44I)) | 22 | 0.489 | 1 | 0.489 | 0 | 0.489 | ||||||
| 25569 | T25569C|(ORF3a_protein:T177C(A59A)) | 12 | 0.182 | 1 | 0.182 | 0 | 0.182 | ||||||
| 25578 | C25578A|(ORF3a_protein:C186A(I62I)) | 36 | 0.529 | 1 | 0.529 | 0 | 0.529 | ||||||
| linked | 25584 | C25584T|(ORF3a_protein:C192T(T64T)) | 81 | 1.000 | 32 | 0.457 | 2 | 0.457 | 1.0 | 1.457 | |||
| 25609 | C25609T|(ORF3a_protein:C217T(L73F)) | 26 | 0.456 | 1 | 0.456 | 0 | 0.456 | ||||||
| 25614 | RATG13 | C25614T|(ORF3a_protein:C222T(S74S)) | 16 | 0.271 | 1 | 0.271 | 0 | 0.271 | |||||
| 25640 | T25640G|(ORF3a_protein:T248G(L83W)) | 24 | 0.471 | 1 | 0.471 | 0 | 0.471 | ||||||
| 25647 | G25647A|(ORF3a_protein:G255A(L85L)) | 14 | 0.280 | 1 | 0.28 | 0 | 0.28 | ||||||
| 25681 | G25681T|(ORF3a_protein:G289T(V97F)) | 17 | 0.340 | 1 | 0.34 | 0 | 0.34 | ||||||
| 25706 | T25706A|(ORF3a_protein:T314A(F105Y)) | 242 | 0.678 | 1 | 0.678 | 0 | 0.678 | ||||||
| 25726 | G25726A|(ORF3a_protein:G334A(V112I)) | 309 | 0.679 | 1 | 0.679 | 0 | 0.679 | ||||||
| 25742 | G25742T|(ORF3a_protein:G350T(S117I)) | 466 | 0.727 | 1 | 0.727 | 0 | 0.727 | ||||||
| 25750 | T25750C|(ORF3a_protein:T358C(F120L)) | 2 | 0.002 | 2 | 0.001 | 495 | 0.732 | 3 | 0.732 | 0.003 | 0.735 | ||
| 25760 | T25760C|(ORF3a_protein:T368C(I123T)) | 1 | 0.001 | 195 | 0.253 | 2 | 0.253 | 0.001 | 0.254 | ||||
| 25888 | T25888A|(ORF3a_protein:T496A(S166T)) | 301 | 0.581 | 1 | 0.581 | 0 | 0.581 | ||||||
| 25913 | G25913A|(ORF3a_protein:G521A(G174D)) | 293 | 0.558 | 1 | 0.558 | 0 | 0.558 | ||||||
| 25928 | T25928C|(ORF3a_protein:T536C(I179T)) | 1 | 0.001 | 213 | 0.525 | 2 | 0.525 | 0.001 | 0.526 | ||||
| 25936 | C25936G|(ORF3a_protein:C544G(H182D)) | 189 | 0.497 | 1 | 0.497 | 0 | 0.497 | ||||||
| 25947 | G25947T|(ORF3a_protein:G555T(Q185H)) | 1 | 0.001 | 190 | 0.496 | 2 | 0.496 | 0.001 | 0.497 | ||||
| 25991 | G25991A|(ORF3a_protein:G599A(C200Y)) | 79 | 0.608 | 1 | 0.608 | 0 | 0.608 | ||||||
| 26036 | A26036C|(ORF3a_protein:A644C(Y215S)) | 153 | 0.797 | 1 | 0.797 | 0 | 0.797 | ||||||
| 26046 | A26046G|(ORF3a_protein:A654G(Q218Q)) | 21 | 0.092 | 1 | 0.092 | 0 | 0.092 | ||||||
| 26054 | C26054A|(ORF3a_protein:C662A(T221K)) | 208 | 0.839 | 1 | 0.839 | 0 | 0.839 | ||||||
| 26057 | A26057G|(ORF3a_protein:A665G(D222G)) | 208 | 0.839 | 1 | 0.839 | 0 | 0.839 | ||||||
| 26066 | T26066G|(ORF3a_protein:T674G(V225G)) | 245 | 0.825 | 1 | 0.825 | 0 | 0.825 | ||||||
| 26115 | A26115C|(ORF3a_protein:A723C(E241D)) | 292 | 0.762 | 1 | 0.762 | 0 | 0.762 | ||||||
| 26150 | C26150T|(ORF3a_protein:C758T(S253F)) | 253 | 0.742 | 1 | 0.742 | 0 | 0.742 | ||||||
| 26159 | TTA26159-26161del|(ORF3a_protein:GTTAAT766-771GATdel(VN256-257Ddel)) | 232 | 0.725 | 1 | 0.725 | 0 | 0.725 | ||||||
| 26187 | T26187G|(ORF3a_protein:T795G(D265E)) | 192 | 0.711 | 1 | 0.711 | 0 | 0.711 | ||||||
| 26198 | C26198A|(ORF3a_protein:C806A(T269K)) | 197 | 0.714 | 1 | 0.714 | 0 | 0.714 | ||||||
| 26216 | T26216C|(ORF3a_protein:T824C(L275S)) | 172 | 0.732 | 1 | 0.732 | 0 | 0.732 | ||||||
| 26406 | T26406C|(envelope_protein:T162C(P54P)) | 2 | 0.000 | 1523 | 0.997 | 2 | 0.997 | 0.0 | 0.997 | ||||
| 26424 | T26424G|(envelope_protein:T180G(S60S)) | 1545 | 0.998 | 1 | 0.998 | 0 | 0.998 | ||||||
| 26479 | T26479C | 1 | 0.000 | 1764 | 1.000 | 2 | 1.0 | 0.0 | 1.0 | ||||
| 26500 | T26500A | 546 | 0.269 | 1 | 0.269 | 0 | 0.269 | ||||||
| 26509 | C26509T | 1891 | 1.000 | 1 | 1.0 | 0 | 1.0 | ||||||
| 26526 | GCA26526-26528del|(membrane_glycoprotein:4-6del(A2del)) | 1290 | 0.998 | 1 | 0.998 | 0 | 0.998 | ||||||
| 26571 | C26571G|(membrane_glycoprotein:C49G(L17V)) | 834 | 0.999 | 1 | 0.999 | 0 | 0.999 | ||||||
| 26618 | T26618C|(membrane_glycoprotein:T96C(I32I)) | 134 | 0.985 | 1 | 0.985 | 0 | 0.985 | ||||||
| 26653 | G26653A|(membrane_glycoprotein:G131A(R44K)) | 131 | 1.000 | 1 | 1.0 | 0 | 1.0 | ||||||
| 26655 | T26655C|(membrane_glycoprotein:T133C(F45L)) | 131 | 1.000 | 1 | 1.0 | 0 | 1.0 | ||||||
| 26677 | T26677C|(membrane_glycoprotein:T155C(I52T)) | 157 | 1.000 | 1 | 1.0 | 0 | 1.0 | ||||||
| 26700 | G26700T|(membrane_glycoprotein:G178T(V60L)) | 194 | 1.000 | 1 | 1.0 | 0 | 1.0 | ||||||
| 26712 | TG26712-26713del|(membrane_glycoprotein:190-191del(64fs)) | 31 | 0.168 | 1 | 0.168 | 0 | 0.168 | ||||||
| 26811 | A26811G|(membrane_glycoprotein:A289G(I97V)) | 158 | 0.994 | 1 | 0.994 | 0 | 0.994 | ||||||
| 26814 | G26814T|(membrane_glycoprotein:G292T(A98S)) | 159 | 1.000 | 1 | 1.0 | 0 | 1.0 | ||||||
| 26931 | G26931-26931del|(membrane_glycoprotein:409-409del(137fs)) | 9 | 0.123 | 1 | 0.123 | 0 | 0.123 | ||||||
| 27039 | T27039G|(membrane_glycoprotein:T517G(S173A)) | 80 | 1.000 | 1 | 1.0 | 0 | 1.0 | ||||||
| 27131 | C27131T|(membrane_glycoprotein:C609T(N203N)) | 79 | 0.975 | 1 | 0.975 | 0 | 0.975 | ||||||
| 27132 | T27132C|(membrane_glycoprotein:T610C(Y204H)) | 79 | 0.975 | 1 | 0.975 | 0 | 0.975 | ||||||
| 27136 | A27136G|(membrane_glycoprotein:A614G(K205R)) | 81 | 1.000 | 1 | 1.0 | 0 | 1.0 | ||||||
| 27138 | T27138C|(membrane_glycoprotein:T616C(L206L)) | 79 | 0.975 | 1 | 0.975 | 0 | 0.975 | ||||||
| 27199 | C27199T | 387 | 0.223 | 1 | 0.223 | 0 | 0.223 | ||||||
| 27300 | A27300T|(ORF6_protein:A99T(I33I)) | 4264 | 0.738 | 1 | 0.738 | 0 | 0.738 | ||||||
| 27318 | T27318G|(ORF6_protein:T117G(N39K)) | 1 | 0.000 | 1189 | 0.215 | 2 | 0.215 | 0.0 | 0.215 | ||||
| 27322 | T27322C|(ORF6_protein:T121C(S41P)) | 1177 | 0.225 | 1 | 0.225 | 0 | 0.225 | ||||||
| 27337 | G27337A|(ORF6_protein:G136A(E46K)) | 1 | 0.000 | 1085 | 0.189 | 2 | 0.189 | 0.0 | 0.189 | ||||
| 27380 | T27380C|(ORF6_protein:T179C(I60T)) | 1 | 0.000 | 449 | 0.087 | 2 | 0.087 | 0.0 | 0.087 | ||||
| 27721 | A27721C|(ORF7a_protein:A328C(I110L)) | 2 | 0.091 | 1 | 0.091 | 0 | 0.091 | ||||||
| ubiq | 27807 | C27807T|(ORF7b:C52T(L18L)) | 90 | 1.000 | 5121 | 0.997 | 24734 | 0.998 | 3 | 0.998 | 1.9969999999999999 | 2.995 | |
| ubiq | 27810 | T27810C|(ORF7b:T55C(F19L)) | 90 | 1.000 | 5129 | 0.999 | 24766 | 0.999 | 3 | 0.999 | 1.999 | 2.998 | |
| 28079 | G28079T|(ORF8_protein:G186T(V62V)) | 3 | 0.073 | 1 | 0.073 | 0 | 0.073 | ||||||
| 28269 | C28269-28269del | 317 | 0.274 | 1 | 0.274 | 0 | 0.274 | ||||||
| 28271 | Delta | A28271-28271del | 838 | 0.726 | 1 | 0.726 | 0 | 0.726 | |||||
| linked | 28271 | A28271T | 8067 | 1.000 | 6681 | 1.000 | 317 | 0.274 | 3 | 0.274 | 2.0 | 2.274 | |
| 28291 | C28291T|(nucleocapsid_phosphoprotein:C18T(P6P)) | 1483 | 0.999 | 1 | 0.999 | 0 | 0.999 | ||||||
| 28300 | RATG13 | G28300A|(nucleocapsid_phosphoprotein:G27A(Q9Q)) | 3 | 0.000 | 1763 | 1.000 | 2 | 1.0 | 0.0 | 1.0 | |||
| 28373 | G28373-28373del|(nucleocapsid_phosphoprotein:100-100del(34fs)) | 1 | 0.000 | 624 | 0.284 | 2 | 0.284 | 0.0 | 0.284 | ||||
| 28435 | C28435A|(nucleocapsid_phosphoprotein:C162A(T54T)) | 1 | 0.000 | 2242 | 1.000 | 2 | 1.0 | 0.0 | 1.0 | ||||
| 28513 | A28513C|(nucleocapsid_phosphoprotein:A240C(P80P)) | 4 | 0.000 | 1018 | 0.990 | 2 | 0.99 | 0.0 | 0.99 | ||||
| 28522 | A28522T|(nucleocapsid_phosphoprotein:A249T(Q83H)) | 834 | 0.937 | 1 | 0.937 | 0 | 0.937 | ||||||
| 28693 | T28693C|(nucleocapsid_phosphoprotein:T420C(N140N)) | 1 | 0.000 | 45631 | 0.875 | 2 | 0.875 | 0.0 | 0.875 | ||||
| 28791 | C28791T|(nucleocapsid_phosphoprotein:C518T(A173V)) | 1 | 0.000 | 43546 | 0.844 | 2 | 0.844 | 0.0 | 0.844 | ||||
| 28906 | T28906G|(nucleocapsid_phosphoprotein:T633G(A211A)) | 1 | 0.000 | 4186 | 0.803 | 2 | 0.803 | 0.0 | 0.803 | ||||
| 28916 | G28916T|(nucleocapsid_phosphoprotein:G643T(G215C)) | 8220 | 0.728 | 1 | 0.728 | 0 | 0.728 | ||||||
| 28996 | A28996T|(nucleocapsid_phosphoprotein:A723T(Q241H)) | 1676 | 0.112 | 1 | 0.112 | 0 | 0.112 | ||||||
| 29026 | T29026C|(nucleocapsid_phosphoprotein:T753C(A251A)) | 1 | 0.000 | 10230 | 0.788 | 2 | 0.788 | 0.0 | 0.788 | ||||
| 29035 | T29035G|(nucleocapsid_phosphoprotein:T762G(A254A)) | 6 | 0.001 | 10357 | 0.791 | 2 | 0.791 | 0.001 | 0.792 | ||||
| 29084 | A29084G|(nucleocapsid_phosphoprotein:ACA811-813GTA(T271V)) | 5781 | 0.767 | 1 | 0.767 | 0 | 0.767 | ||||||
| 29085 | C29085T|(nucleocapsid_phosphoprotein:ACA811-813GTA(T271V)) | 5781 | 0.767 | 1 | 0.767 | 0 | 0.767 | ||||||
| 29171 | C29171A|(nucleocapsid_phosphoprotein:C898A(H300N)) | 3327 | 0.801 | 1 | 0.801 | 0 | 0.801 | ||||||
| linked | 29181 | A29181C|(nucleocapsid_phosphoprotein:A908C(Q303P)) | 2 | 0.001 | 1 | 0.001 | 0 | 0.001 | |||||
| linked | 29185 | T29185C|(nucleocapsid_phosphoprotein:T912C(I304I)) | 2 | 0.002 | 1 | 0.002 | 0 | 0.002 | |||||
| linked | 29188 | A29188C|(nucleocapsid_phosphoprotein:A915C(A305A)) | 2 | 0.001 | 2 | 0.001 | 1 | 0.001 | 3 | 0.001 | 0.002 | 0.003 | |
| linked | 29192 | T29192G|(nucleocapsid_phosphoprotein:T919G(F307V)) | 1 | 0.000 | 1 | 0.029 | 2 | 0.029 | 0.0 | 0.029 | |||
| 29196 | C29196G|(nucleocapsid_phosphoprotein:C923G(A308G)) | 1 | 0.143 | 1 | 0.143 | 0 | 0.143 | ||||||
| 29457 | T29457C|(nucleocapsid_phosphoprotein:T1184C(L395P)) | 1 | 0.000 | 1 | 1.000 | 2 | 1.0 | 0.0 | 1.0 | ||||
| 29460 | C29460G|(nucleocapsid_phosphoprotein:C1187G(P396R)) | 1 | 0.333 | 1 | 0.333 | 0 | 0.333 | ||||||
| 29483 | T29483G|(nucleocapsid_phosphoprotein:T1210G(S404A)) | 1 | 0.001 | 3 | 0.001 | 1 | 0.111 | 3 | 0.111 | 0.002 | 0.113 | ||
| 29484 | C29484A|(nucleocapsid_phosphoprotein:C1211A(S404Y)) | 2 | 0.001 | 4 | 0.001 | 2 | 0.222 | 3 | 0.222 | 0.002 | 0.224 | ||
| 29515 | T29515C|(nucleocapsid_phosphoprotein:T1242C(A414A)) | 493 | 0.768 | 1 | 0.768 | 0 | 0.768 | ||||||
| 29515 | T29515G|(nucleocapsid_phosphoprotein:T1242G(A414A)) | 48 | 0.075 | 1 | 0.075 | 0 | 0.075 | ||||||
| 29516 | G29516A|(nucleocapsid_phosphoprotein:G1243A(D415N)) | 458 | 0.713 | 1 | 0.713 | 0 | 0.713 | ||||||
| 29516 | G29516A|(nucleocapsid_phosphoprotein:GAC1243-1245AAT(D415N)) | 74 | 0.115 | 1 | 0.115 | 0 | 0.115 | ||||||
| 29518 | RATG13 | C29518T|(nucleocapsid_phosphoprotein:GAC1243-1245AAT(D415N)) | 74 | 0.082 | 1 | 0.082 | 0 | 0.082 | |||||
| 29545 | C29545T | 603 | 0.229 | 1 | 0.229 | 0 | 0.229 | ||||||
| 29581 | 29581-insertT|(ORF10_protein:24insertT(8fs)) | 3596 | 0.710 | 1 | 0.71 | 0 | 0.71 | ||||||
| 29581 | TT29581-29582del|(ORF10_protein:24-25del(8fs)) | 1019 | 0.202 | 1 | 0.202 | 0 | 0.202 | ||||||
| 29663 | A29663G|(ORF10_protein:A106G(N36D)) | 4766 | 0.802 | 1 | 0.802 | 0 | 0.802 | ||||||
| 29700 | A29700G | 5485 | 1.000 | 1 | 1.0 | 0 | 1.0 | ||||||
| 29742 | Delta | G29742T | 4303 | 0.999 | 1 | 0.999 | 0 | 0.999 | |||||
| 29743 | C29743T | 4301 | 0.998 | 1 | 0.998 | 0 | 0.998 | ||||||
| 29746 | AGT29746-29748del | 4306 | 1.000 | 1 | 1.0 | 0 | 1.0 | ||||||
| 29756 | AGTGTAC29756-29762del | 3159 | 0.937 | 1 | 0.937 | 0 | 0.937 | ||||||
| 29760 | T29760A | 207 | 0.061 | 1 | 0.061 | 0 | 0.061 | ||||||
| 29804 | T29804C | 2267 | 0.999 | 1 | 0.999 | 0 | 0.999 |