This table shows the complete data from the mutations.tsv file exactly as it appears in the source. Scroll horizontally to see all columns.
| SRR32355749(2317723) | SRR35903923(9072650) | SRR35903932(7212033) | SRR35903981(11320501) | SRR35953078(5397287) | SRR35953111(5057171) | SRR36005449(8126442) | SRR36005473(6908759) | SRR36112043(6739597) | SRR36112046(8186042) | SRR36668494(5656521) | |||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| "('2025-02-05', '240000')" | "('2025-10-22', '120000')" | "('2025-10-22', '240000')" | "('2025-10-20', '120000')" | "('2025-10-29', '120000')" | "('2025-10-27', '120000')" | "('2025-11-05', '120000')" | "('2025-11-03', '120000')" | "('2025-11-12', '120000')" | "('2025-11-12', '240000')" | "('2025-12-19', '240000')" | |||||||||||||||||||
| Sequences | Count | Abundance | Count | Abundance | Count | Abundance | Count | Abundance | Count | Abundance | Count | Abundance | Count | Abundance | Count | Abundance | Count | Abundance | Count | Abundance | Count | Abundance | Total samples | Positives Sum | Negatives Sum | Total Sum | |||
| 84 | C84A | 25 | 0.002 | 7 | 1.000 | 176 | 0.003 | 43 | 0.001 | 22 | 0.001 | 20 | 0.001 | 6 | 1.002 | 0.006 | 1.008 | ||||||||||||
| 88 | G88A | 4 | 0.001 | 2 | 0.000 | 7 | 1.000 | 11 | 0.000 | 1 | 0.000 | 2 | 0.000 | 6 | 1.001 | 0.0 | 1.001 | ||||||||||||
| 91 | RATG13 | G91A | 3 | 0.000 | 7 | 1.000 | 5 | 0.000 | 1 | 0.000 | 3 | 0.000 | 5 | 1.0 | 0.0 | 1.0 | |||||||||||||
| 100 | C100A | 1 | 0.000 | 6 | 0.000 | 7 | 1.000 | 41 | 0.001 | 8 | 0.000 | 9 | 0.000 | 7 | 0.000 | 7 | 1.0 | 0.001 | 1.001 | ||||||||||
| 111 | T111C | 7 | 0.001 | 1 | 0.000 | 3 | 0.000 | 23543 | 0.999 | 4 | 1.0 | 0.0 | 1.0 | ||||||||||||||||
| 123 | C123T | 5 | 0.001 | 7 | 1.000 | 1 | 0.000 | 4 | 0.000 | 1 | 0.000 | 1 | 0.000 | 6 | 1.001 | 0.0 | 1.001 | ||||||||||||
| 168 | T168C | 5 | 0.000 | 1 | 0.000 | 8 | 1.000 | 4 | 0.000 | 1 | 0.000 | 5 | 0.000 | 10 | 0.000 | 7 | 1.0 | 0.0 | 1.0 | ||||||||||
| 178 | A178G | 13 | 0.000 | 2 | 0.000 | 8 | 1.000 | 16 | 0.000 | 1 | 0.000 | 23606 | 0.804 | 17 | 0.001 | 7 | 1.8050000000000000 | 0.0 | 1.8050000000000000 | ||||||||||
| 190 | RATG13 | C190T | 9 | 0.000 | 7 | 0.875 | 4135 | 0.141 | 3 | 1.016 | 0 | 1.016 | |||||||||||||||||
| 192 | GC192-193del | 40158 | 0.829 | 1781 | 0.060 | 15 | 0.000 | 3 | 0.889 | 0 | 0.889 | ||||||||||||||||||
| 195 | 195-insertA | 40161 | 0.829 | 131 | 0.004 | 15 | 0.000 | 3 | 0.833 | 0 | 0.833 | ||||||||||||||||||
| 195 | T195C | 40128 | 0.829 | 1 | 0.000 | 6 | 0.000 | 4 | 0.000 | 133 | 0.004 | 18 | 0.001 | 6 | 0.834 | 0.0 | 0.834 | ||||||||||||
| 212 | T212C | 23076 | 0.476 | 2 | 0.000 | 6 | 0.000 | 6 | 0.000 | 227162 | 0.882 | 12 | 0.000 | 6 | 1.358 | 0.0 | 1.358 | ||||||||||||
| 222 | C222A | 5 | 0.000 | 28 | 0.002 | 193 | 0.003 | 40 | 0.001 | 87105 | 0.338 | 163 | 0.005 | 6 | 0.343 | 0.006 | 0.34900000000000000 | ||||||||||||
| 229 | A229G | 39 | 0.001 | 7 | 0.000 | 8 | 1.000 | 30 | 0.000 | 8 | 0.000 | 75 | 0.000 | 9 | 0.000 | 7 | 1.001 | 0.0 | 1.001 | ||||||||||
| 263 | A263G | 20 | 0.000 | 6 | 0.000 | 34 | 0.000 | 5 | 0.000 | 166122 | 0.649 | 13 | 0.000 | 6 | 0.649 | 0.0 | 0.649 | ||||||||||||
| 291 | A291T|(ORF1ab_polyprotein:A26T(N9I))|(ORF1a_polyprotein:A26T(N9I)) | 1 | 0.000 | 25 | 0.002 | 1 | 1.000 | 176 | 0.002 | 24 | 0.001 | 18 | 0.001 | 12 | 0.000 | 7 | 1.001 | 0.005 | 1.0060000000000000 | ||||||||||
| 316 | T316C|(ORF1ab_polyprotein:T51C(S17S))|(ORF1a_polyprotein:T51C(S17S)) | 3 | 0.000 | 1 | 1.000 | 19 | 0.000 | 4 | 0.000 | 2 | 0.000 | 7 | 0.000 | 6 | 1.0 | 0.0 | 1.0 | ||||||||||||
| 344 | C344T|(ORF1ab_polyprotein:C79T(L27F))|(ORF1a_polyprotein:C79T(L27F)) | 1 | 0.000 | 3 | 0.000 | 3 | 0.000 | 11614 | 0.502 | 1 | 0.000 | 5 | 0.502 | 0.0 | 0.502 | ||||||||||||||
| 347 | G347A|(ORF1ab_polyprotein:G82A(V28I))|(ORF1a_polyprotein:G82A(V28I)) | 2 | 0.000 | 3 | 0.000 | 1 | 0.000 | 11573 | 0.500 | 1 | 0.000 | 5 | 0.5 | 0.0 | 0.5 | ||||||||||||||
| 378 | RATG13 | T378C|(ORF1ab_polyprotein:T113C(V38A))|(ORF1a_polyprotein:T113C(V38A)) | 6 | 0.001 | 2 | 0.000 | 14 | 0.000 | 6 | 0.000 | 23078 | 0.994 | 11 | 0.000 | 6 | 0.995 | 0.0 | 0.995 | |||||||||||
| 425 | GTAGAAGTTGAAAAAGGCGTTTTGCCTCAACTT425-457del|(ORF1ab_polyprotein:160-192del(VEVEKGVLPQL54-64del))|(ORF1a_polyprotein:160-192del(VEVEKGVLPQL54-64del)) | 2272 | 0.936 | 1885 | 0.957 | 21466 | 0.987 | 19 | 0.184 | 4 | 3.064 | 0 | 3.064 | ||||||||||||||||
| 451 | T451G|(ORF1ab_polyprotein:T186G(P62P))|(ORF1a_polyprotein:T186G(P62P)) | 30226 | 0.792 | 1 | 0.004 | 1824 | 0.068 | 3 | 0.8600000000000000 | 0.004 | 0.8640000000000000 | ||||||||||||||||||
| 465 | C465A|(ORF1ab_polyprotein:C200A(P67H))|(ORF1a_polyprotein:C200A(P67H)) | 1840 | 0.047 | 2 | 0.009 | 1609 | 0.817 | 2 | 0.008 | 1419 | 0.049 | 19 | 0.181 | 6 | 1.0940000000000000 | 0.017 | 1.1110000000000000 | ||||||||||||
| 474 | T474C|(ORF1ab_polyprotein:T209C(F70S))|(ORF1a_polyprotein:T209C(F70S)) | 3 | 0.000 | 273 | 0.139 | 21026 | 0.725 | 19 | 0.181 | 4 | 1.045 | 0 | 1.045 | ||||||||||||||||
| 475 | C475A|(ORF1ab_polyprotein:C210A(F70L))|(ORF1a_polyprotein:C210A(F70L)) | 20538 | 0.530 | 2 | 0.001 | 4790 | 0.165 | 1 | 0.010 | 4 | 0.7060000000000000 | 0 | 0.7060000000000000 | ||||||||||||||||
| 479 | AAA479-481del|(ORF1ab_polyprotein:214-216del(K72del))|(ORF1a_polyprotein:214-216del(K72del)) | 275 | 0.140 | 20368 | 0.703 | 19 | 0.181 | 3 | 1.024 | 0 | 1.024 | ||||||||||||||||||
| 480 | AAC480-482del|(ORF1ab_polyprotein:AAACGT214-219AGTdel(KR72-73Sdel))|(ORF1a_polyprotein:AAACGT214-219AGTdel(KR72-73Sdel)) | 1606 | 0.815 | 693 | 0.024 | 2 | 0.839 | 0 | 0.839 | ||||||||||||||||||||
| 486 | C486T|(ORF1ab_polyprotein:C221T(S74L))|(ORF1a_polyprotein:C221T(S74L)) | 856 | 0.022 | 1880 | 0.954 | 21531 | 0.743 | 19 | 0.181 | 4 | 1.9 | 0 | 1.9 | ||||||||||||||||
| 488 | G488A|(ORF1ab_polyprotein:G223A(D75N))|(ORF1a_polyprotein:G223A(D75N)) | 1878 | 0.953 | 21508 | 0.742 | 19 | 0.181 | 3 | 1.876 | 0 | 1.876 | ||||||||||||||||||
| 508 | TGGTCATGTT508-517del|(ORF1ab_polyprotein:CATGGTCATGTTATGGTT241-258CAAdel(HGHVMV81-86Qdel))|(ORF1a_polyprotein:CATGGTCATGTTATGGTT241-258CAAdel(HGHVMV81-86Qdel)) | 250 | 0.127 | 15325 | 0.702 | 19 | 0.184 | 3 | 1.013 | 0 | 1.013 | ||||||||||||||||||
| 508 | TGGTCATGTTATGGT508-522del|(ORF1ab_polyprotein:CATGGTCATGTTATGGTT241-258CATdel(HGHVMV81-86Hdel))|(ORF1a_polyprotein:CATGGTCATGTTATGGTT241-258CATdel(HGHVMV81-86Hdel)) | 2213 | 0.938 | 1620 | 0.822 | 6179 | 0.283 | 3 | 2.043 | 0 | 2.043 | ||||||||||||||||||
| 519 | TGGTT519-523del|(ORF1ab_polyprotein:CATGGTCATGTTATGGTT241-258CAAdel(HGHVMV81-86Qdel))|(ORF1a_polyprotein:CATGGTCATGTTATGGTT241-258CAAdel(HGHVMV81-86Qdel)) | 250 | 0.127 | 15325 | 0.702 | 19 | 0.183 | 3 | 1.012 | 0 | 1.012 | ||||||||||||||||||
| 537 | A537C|(ORF1ab_polyprotein:A272C(E91A))|(ORF1a_polyprotein:A272C(E91A)) | 1886 | 0.956 | 1 | 0.001 | 20842 | 0.948 | 20 | 0.192 | 4 | 2.096 | 0.001 | 2.097 | ||||||||||||||||
| 560 | C560A|(ORF1ab_polyprotein:C295A(R99S))|(ORF1a_polyprotein:C295A(R99S)) | 2300 | 0.975 | 1857 | 0.941 | 2 | 0.008 | 20878 | 0.950 | 19 | 0.183 | 5 | 3.049 | 0.008 | 3.057 | ||||||||||||||
| 593 | RATG13 | C593T|(ORF1ab_polyprotein:CAT328-330TAC(H110Y))|(ORF1a_polyprotein:CAT328-330TAC(H110Y)) | 1681 | 0.712 | 1832 | 0.929 | 4450 | 0.203 | 19 | 0.184 | 4 | 2.028 | 0 | 2.028 | |||||||||||||||
| 595 | T595C|(ORF1ab_polyprotein:CAT328-330TAC(H110Y))|(ORF1a_polyprotein:CAT328-330TAC(H110Y)) | 1681 | 0.712 | 1832 | 0.929 | 4450 | 0.203 | 19 | 0.184 | 4 | 2.028 | 0 | 2.028 | ||||||||||||||||
| 595 | T595C|(ORF1ab_polyprotein:T330C(H110H))|(ORF1a_polyprotein:T330C(H110H)) | 593 | 0.251 | 23 | 0.012 | 8419 | 0.383 | 3 | 0.646 | 0 | 0.646 | ||||||||||||||||||
| 632 | C632T|(ORF1ab_polyprotein:C367T(L123F))|(ORF1a_polyprotein:C367T(L123F)) | 2219 | 0.941 | 770 | 0.905 | 14866 | 0.981 | 19 | 0.184 | 4 | 3.011 | 0 | 3.011 | ||||||||||||||||
| 637 | T637C|(ORF1ab_polyprotein:T372C(R124R))|(ORF1a_polyprotein:T372C(R124R)) | 25 | 0.011 | 691 | 0.812 | 7929 | 0.523 | 18 | 0.175 | 4 | 1.521 | 0 | 1.521 | ||||||||||||||||
| 649 | T649A|(ORF1ab_polyprotein:T384A(N128K))|(ORF1a_polyprotein:T384A(N128K)) | 2283 | 0.968 | 768 | 0.896 | 1 | 0.011 | 14519 | 0.960 | 19 | 0.143 | 5 | 2.967 | 0.011 | 2.978 | ||||||||||||||
| 670 | T670A|(ORF1ab_polyprotein:T405A(S135R))|(ORF1a_polyprotein:T405A(S135R)) | 1215 | 0.985 | 766 | 0.747 | 15041 | 0.990 | 19 | 0.078 | 4 | 2.8 | 0 | 2.8 | ||||||||||||||||
| linked | 684 | T684C|(ORF1ab_polyprotein:T419C(L140P))|(ORF1a_polyprotein:T419C(L140P)) | 685 | 0.043 | 39 | 0.000 | 973 | 0.010 | 18 | 0.000 | 79 | 0.000 | 13478 | 0.057 | 28 | 0.000 | 7 | 0.11 | 0.0 | 0.11 | |||||||||
| linked | 897 | C897A|(ORF1ab_polyprotein:C632A(A211D))|(ORF1a_polyprotein:C632A(A211D)) | 14844 | 0.997 | 276519 | 0.545 | 97131 | 0.992 | 259174 | 0.993 | 1 | 0.250 | 1 | 0.500 | 1155897 | 0.994 | 1 | 1.000 | 58531 | 0.265 | 105933 | 0.996 | 10 | 3.25 | 4.282 | 7.532 | |||
| 932 | G932T|(ORF1ab_polyprotein:G667T(D223Y))|(ORF1a_polyprotein:G667T(D223Y)) | 2 | 0.000 | 461 | 0.001 | 96931 | 0.990 | 189 | 0.001 | 777 | 0.001 | 95 | 0.000 | 51 | 0.000 | 7 | 0.99 | 0.003 | 0.993 | ||||||||||
| 1168 | A1168G|(ORF1ab_polyprotein:A903G(R301R))|(ORF1a_polyprotein:A903G(R301R)) | 464 | 0.397 | 25 | 0.000 | 1 | 0.000 | 23 | 0.000 | 5 | 0.000 | 21634 | 0.943 | 6 | 1.3400000000000000 | 0.0 | 1.3400000000000000 | ||||||||||||
| 1758 | C1758T|(ORF1ab_polyprotein:C1493T(A498V))|(ORF1a_polyprotein:C1493T(A498V)) | 10592 | 0.512 | 7 | 0.000 | 102 | 0.000 | 9 | 0.000 | 21 | 0.000 | 13 | 0.000 | 6 | 0.512 | 0.0 | 0.512 | ||||||||||||
| 2060 | G2060A|(ORF1ab_polyprotein:G1795A(A599T))|(ORF1a_polyprotein:G1795A(A599T)) | 36221 | 0.726 | 23 | 0.000 | 23 | 0.000 | 25 | 0.000 | 9 | 0.000 | 12 | 0.000 | 13 | 0.000 | 7 | 0.726 | 0.0 | 0.726 | ||||||||||
| 2095 | RATG13 | G2095A|(ORF1ab_polyprotein:G1830A(S610S))|(ORF1a_polyprotein:G1830A(S610S)) | 16 | 0.000 | 6 | 0.000 | 10 | 0.000 | 22 | 0.000 | 10 | 0.000 | 4164 | 0.030 | 40434 | 0.394 | 7 | 0.42400000000000000 | 0.0 | 0.42400000000000000 | |||||||||
| 2509 | RATG13 | C2509T|(ORF1ab_polyprotein:C2244T(P748P))|(ORF1a_polyprotein:C2244T(P748P)) | 2 | 0.000 | 1 | 0.000 | 30 | 0.000 | 27562 | 0.861 | 8 | 0.000 | 5 | 0.861 | 0.0 | 0.861 | |||||||||||||
| 2586 | T2586C|(ORF1ab_polyprotein:T2321C(V774A))|(ORF1a_polyprotein:T2321C(V774A)) | 7562 | 0.423 | 10 | 0.000 | 3 | 0.000 | 62 | 0.000 | 2 | 0.000 | 6 | 0.000 | 11 | 0.000 | 7 | 0.423 | 0.0 | 0.423 | ||||||||||
| 2731 | G2731T|(ORF1ab_polyprotein:G2466T(K822N))|(ORF1a_polyprotein:G2466T(K822N)) | 1 | 0.062 | 271 | 0.002 | 19 | 0.003 | 1542 | 0.004 | 56 | 0.002 | 3916 | 0.342 | 6 | 0.40700000000000000 | 0.008 | 0.41500000000000000 | ||||||||||||
| 2756 | A2756G|(ORF1ab_polyprotein:A2491G(I831V))|(ORF1a_polyprotein:A2491G(I831V)) | 12 | 0.000 | 1 | 0.000 | 25 | 0.000 | 8 | 0.000 | 9595 | 0.858 | 5 | 0.858 | 0.0 | 0.858 | ||||||||||||||
| linkedubiq | 3037 | "RATG13,Delta" | C3037T|(ORF1ab_polyprotein:C2772T(F924F))|(ORF1a_polyprotein:C2772T(F924F)) | 3827 | 0.999 | 1 | 1.000 | 22125 | 0.984 | 14283 | 0.979 | 13062 | 0.991 | 27029 | 0.983 | 6 | 3.9570000000000000 | 1.979 | 5.936 | ||||||||||
| 3096 | C3096T|(ORF1ab_polyprotein:C2831T(S944L))|(ORF1a_polyprotein:C2831T(S944L)) | 11230 | 0.870 | 1 | 0.000 | 2 | 0.87 | 0 | 0.87 | ||||||||||||||||||||
| 3156 | C3156T|(ORF1ab_polyprotein:C2891T(A964V))|(ORF1a_polyprotein:C2891T(A964V)) | 21722 | 0.996 | 1 | 0.000 | 3 | 0.000 | 7 | 0.000 | 4 | 0.996 | 0.0 | 0.996 | ||||||||||||||||
| 3170 | C3170T|(ORF1ab_polyprotein:C2905T(L969F))|(ORF1a_polyprotein:C2905T(L969F)) | 11230 | 0.870 | 6 | 0.000 | 2 | 0.87 | 0 | 0.87 | ||||||||||||||||||||
| linked | 3565 | T3565C|(ORF1ab_polyprotein:T3300C(G1100G))|(ORF1a_polyprotein:T3300C(G1100G)) | 9848 | 0.997 | 40733 | 0.995 | 82250 | 0.997 | 1 | 1.000 | 211526 | 0.998 | 29251 | 0.997 | 42593 | 0.711 | 7 | 2.703 | 3.992 | 6.695 | |||||||||
| 3743 | C3743T|(ORF1ab_polyprotein:C3478T(H1160Y))|(ORF1a_polyprotein:C3478T(H1160Y)) | 5 | 0.001 | 1 | 0.000 | 1 | 0.000 | 20 | 0.000 | 15990 | 0.990 | 5 | 0.000 | 6 | 0.991 | 0.0 | 0.991 | ||||||||||||
| 3874 | RATG13 | C3874T|(ORF1ab_polyprotein:C3609T(I1203I))|(ORF1a_polyprotein:C3609T(I1203I)) | 9748 | 0.660 | 3 | 0.000 | 4 | 0.000 | 6 | 0.000 | 7 | 0.000 | 1 | 0.000 | 5 | 0.000 | 7 | 0.66 | 0.0 | 0.66 | |||||||||
| 4047 | G4047A|(ORF1ab_polyprotein:G3782A(G1261D))|(ORF1a_polyprotein:G3782A(G1261D)) | 4171 | 0.825 | 4 | 0.000 | 8 | 0.000 | 2 | 0.000 | 5 | 0.000 | 5 | 0.825 | 0.0 | 0.825 | ||||||||||||||
| 4067 | G4067A|(ORF1ab_polyprotein:G3802A(A1268T))|(ORF1a_polyprotein:G3802A(A1268T)) | 3 | 0.000 | 42369 | 0.480 | 2 | 0.000 | 16180 | 0.793 | 2 | 0.000 | 5 | 1.2730000000000000 | 0.0 | 1.2730000000000000 | ||||||||||||||
| 4160 | G4160T|(ORF1ab_polyprotein:G3895T(V1299L))|(ORF1a_polyprotein:G3895T(V1299L)) | 3 | 0.000 | 38 | 0.000 | 62 | 0.000 | 92 | 0.000 | 9 | 0.000 | 33359 | 0.995 | 6 | 0.995 | 0.0 | 0.995 | ||||||||||||
| 4181 | G4181A|(ORF1ab_polyprotein:G3916A(A1306T))|(ORF1a_polyprotein:G3916A(A1306T)) | 36 | 0.002 | 4 | 0.000 | 2 | 0.000 | 17 | 0.000 | 21007 | 0.652 | 2 | 0.000 | 6 | 0.654 | 0.0 | 0.654 | ||||||||||||
| linked | 4184 | G4184A|(ORF1ab_polyprotein:G3919A(G1307S))|(ORF1a_polyprotein:G3919A(G1307S)) | 22333 | 0.998 | 1 | 1.000 | 100496 | 0.997 | 154233 | 0.996 | 4 | 1.000 | 258073 | 0.998 | 11146 | 0.346 | 33563 | 0.998 | 8 | 3.3390000000000000 | 3.9940000000000000 | 7.333000000000000 | |||||||
| 4206 | C4206T|(ORF1ab_polyprotein:C3941T(A1314V))|(ORF1a_polyprotein:C3941T(A1314V)) | 22335 | 0.998 | 3 | 0.000 | 7 | 0.000 | 8 | 0.000 | 2 | 0.000 | 5 | 0.998 | 0.0 | 0.998 | ||||||||||||||
| 4207 | G4207A|(ORF1ab_polyprotein:G3942A(A1314A))|(ORF1a_polyprotein:G3942A(A1314A)) | 4 | 0.000 | 9 | 0.000 | 11 | 0.000 | 11151 | 0.346 | 2 | 0.000 | 5 | 0.346 | 0.0 | 0.346 | ||||||||||||||
| linked | 4214 | T4214C|(ORF1ab_polyprotein:T3949C(L1317L))|(ORF1a_polyprotein:T3949C(L1317L)) | 5 | 0.000 | 100472 | 0.996 | 154224 | 0.996 | 2 | 0.500 | 257833 | 0.997 | 11149 | 0.346 | 33287 | 0.990 | 7 | 2.332 | 2.493 | 4.825000000000000 | |||||||||
| linked | 4321 | C4321T|(ORF1ab_polyprotein:C4056T(A1352A))|(ORF1a_polyprotein:C4056T(A1352A)) | 22625 | 0.998 | 2 | 1.000 | 99512 | 0.990 | 152526 | 0.990 | 3 | 0.600 | 253675 | 0.993 | 11112 | 0.345 | 33422 | 0.995 | 8 | 3.3280000000000000 | 3.5830000000000000 | 6.911 | |||||||
| 4331 | C4331T|(ORF1ab_polyprotein:C4066T(L1356L))|(ORF1a_polyprotein:C4066T(L1356L)) | 10 | 0.000 | 5 | 0.000 | 5 | 0.000 | 4 | 0.000 | 11329 | 0.352 | 2 | 0.000 | 6 | 0.352 | 0.0 | 0.352 | ||||||||||||
| 4442 | RATG13 | G4442A|(ORF1ab_polyprotein:G4177A(V1393M))|(ORF1a_polyprotein:G4177A(V1393M)) | 2 | 0.000 | 12 | 0.000 | 5 | 0.000 | 16 | 0.000 | 28 | 0.000 | 43 | 0.000 | 40253 | 0.350 | 7 | 0.000 | 8 | 0.35 | 0.0 | 0.35 | |||||||
| 4485 | A4485C|(ORF1ab_polyprotein:A4220C(K1407T))|(ORF1a_polyprotein:A4220C(K1407T)) | 1 | 0.000 | 49 | 0.000 | 149 | 0.001 | 118 | 0.000 | 217 | 0.000 | 44670 | 0.509 | 6 | 0.001 | 7 | 0.51 | 0.001 | 0.511 | ||||||||||
| 4508 | G4508T|(ORF1ab_polyprotein:G4243T(V1415L))|(ORF1a_polyprotein:G4243T(V1415L)) | 48273 | 0.339 | 395 | 0.001 | 291 | 0.001 | 480 | 0.001 | 28 | 0.000 | 3 | 0.000 | 6 | 0.339 | 0.003 | 0.342 | ||||||||||||
| 4780 | C4780T|(ORF1ab_polyprotein:C4515T(I1505I))|(ORF1a_polyprotein:C4515T(I1505I)) | 25 | 0.000 | 93404 | 0.330 | 1 | 0.000 | 25 | 0.000 | 3 | 0.000 | 4 | 0.000 | 6 | 0.33 | 0.0 | 0.33 | ||||||||||||
| 4851 | A4851G|(ORF1ab_polyprotein:A4586G(K1529R))|(ORF1a_polyprotein:A4586G(K1529R)) | 28918 | 0.474 | 77 | 0.000 | 56 | 0.000 | 307 | 0.000 | 169135 | 0.830 | 46229 | 0.237 | 6 | 1.541 | 0.0 | 1.541 | ||||||||||||
| 4865 | A4865T|(ORF1ab_polyprotein:A4600T(S1534C))|(ORF1a_polyprotein:A4600T(S1534C)) | 29538 | 0.481 | 88 | 0.000 | 47 | 0.000 | 354 | 0.000 | 169292 | 0.831 | 46294 | 0.238 | 6 | 1.5500000000000000 | 0.0 | 1.5500000000000000 | ||||||||||||
| 4991 | A4991T|(ORF1ab_polyprotein:A4726T(N1576Y))|(ORF1a_polyprotein:A4726T(N1576Y)) | 255 | 0.001 | 117 | 0.001 | 902 | 0.001 | 136309 | 0.668 | 73 | 0.000 | 5 | 0.669 | 0.002 | 0.671 | ||||||||||||||
| 5028 | T5028A|(ORF1ab_polyprotein:T4763A(M1588K))|(ORF1a_polyprotein:T4763A(M1588K)) | 29067 | 0.479 | 24 | 0.000 | 12 | 0.000 | 87 | 0.000 | 104728 | 0.513 | 36 | 0.000 | 6 | 0.992 | 0.0 | 0.992 | ||||||||||||
| 5192 | C5192T|(ORF1ab_polyprotein:C4927T(L1643L))|(ORF1a_polyprotein:C4927T(L1643L)) | 3 | 0.001 | 2 | 0.000 | 4 | 0.000 | 35950 | 0.853 | 2 | 0.000 | 5 | 0.854 | 0.0 | 0.854 | ||||||||||||||
| 5212 | A5212G|(ORF1ab_polyprotein:A4947G(A1649A))|(ORF1a_polyprotein:A4947G(A1649A)) | 10 | 0.000 | 25 | 0.000 | 36651 | 0.851 | 6 | 0.000 | 4 | 0.851 | 0.0 | 0.851 | ||||||||||||||||
| 5259 | C5259T|(ORF1ab_polyprotein:C4994T(T1665I))|(ORF1a_polyprotein:C4994T(T1665I)) | 2 | 0.001 | 2 | 0.000 | 9 | 0.000 | 35937 | 0.852 | 2 | 0.000 | 5 | 0.853 | 0.0 | 0.853 | ||||||||||||||
| 5309 | A5309G|(ORF1ab_polyprotein:A5044G(T1682A))|(ORF1a_polyprotein:A5044G(T1682A)) | 2 | 0.000 | 15 | 0.000 | 20617 | 0.489 | 4 | 0.000 | 4 | 0.489 | 0.0 | 0.489 | ||||||||||||||||
| 5395 | T5395A|(ORF1ab_polyprotein:T5130A(F1710L))|(ORF1a_polyprotein:T5130A(F1710L)) | 11128 | 0.832 | 43 | 0.000 | 122 | 0.000 | 113366 | 0.799 | 16302 | 0.143 | 5 | 1.774 | 0.0 | 1.774 | ||||||||||||||
| 5497 | C5497T|(ORF1ab_polyprotein:C5232T(C1744C))|(ORF1a_polyprotein:C5232T(C1744C)) | 2 | 0.000 | 2 | 0.000 | 11 | 0.000 | 66058 | 0.653 | 7 | 0.000 | 5 | 0.653 | 0.0 | 0.653 | ||||||||||||||
| 5512 | RATG13 | C5512T|(ORF1ab_polyprotein:C5247T(N1749N))|(ORF1a_polyprotein:C5247T(N1749N)) | 7 | 0.001 | 45508 | 0.990 | 16 | 0.000 | 6 | 0.000 | 4 | 0.991 | 0.0 | 0.991 | |||||||||||||||
| 5648 | RATG13 | A5648C|(ORF1ab_polyprotein:A5383C(K1795Q))|(ORF1a_polyprotein:A5383C(K1795Q)) | 11147 | 0.998 | 19 | 0.000 | 58 | 0.000 | 79241 | 0.783 | 16484 | 0.177 | 5 | 1.958 | 0.0 | 1.958 | |||||||||||||
| 6074 | RATG13 | T6074C|(ORF1ab_polyprotein:T5809C(F1937L))|(ORF1a_polyprotein:T5809C(F1937L)) | 1004 | 0.907 | 9 | 0.000 | 305 | 0.003 | 34 | 0.000 | 4 | 0.91 | 0 | 0.91 | |||||||||||||||
| 6104 | T6104C|(ORF1ab_polyprotein:T5839C(Y1947H))|(ORF1a_polyprotein:T5839C(Y1947H)) | 402 | 0.362 | 939 | 0.006 | 6614 | 0.055 | 29 | 0.000 | 4 | 0.423 | 0 | 0.423 | ||||||||||||||||
| 6114 | C6114T|(ORF1ab_polyprotein:C5849T(P1950L))|(ORF1a_polyprotein:C5849T(P1950L)) | 1071 | 0.966 | 1087 | 0.007 | 6940 | 0.059 | 9 | 0.000 | 4 | 1.032 | 0 | 1.032 | ||||||||||||||||
| 6130 | TA6130-6131del|(ORF1ab_polyprotein:5865-5866del(1955fs))|(ORF1a_polyprotein:5865-5866del(1955fs)) | 1098 | 0.990 | 193 | 0.001 | 87 | 0.001 | 3 | 0.992 | 0 | 0.992 | ||||||||||||||||||
| 6138 | C6138A|(ORF1ab_polyprotein:C5873A(T1958K))|(ORF1a_polyprotein:C5873A(T1958K)) | 602 | 0.543 | 1385 | 0.009 | 7057 | 0.060 | 85 | 0.000 | 4 | 0.612 | 0 | 0.612 | ||||||||||||||||
| 6138 | C6138T|(ORF1ab_polyprotein:C5873T(T1958I))|(ORF1a_polyprotein:C5873T(T1958I)) | 405 | 0.365 | 15 | 0.000 | 182 | 0.002 | 19 | 0.000 | 4 | 0.367 | 0 | 0.367 | ||||||||||||||||
| 6187 | C6187A|(ORF1ab_polyprotein:C5922A(H1974Q))|(ORF1a_polyprotein:C5922A(H1974Q)) | 775 | 0.699 | 1562 | 0.010 | 7178 | 0.061 | 163 | 0.001 | 4 | 0.7710000000000000 | 0 | 0.7710000000000000 | ||||||||||||||||
| 6188 | T6188C|(ORF1ab_polyprotein:T5923C(Y1975H))|(ORF1a_polyprotein:T5923C(Y1975H)) | 784 | 0.708 | 1135 | 0.007 | 7049 | 0.060 | 27 | 0.000 | 4 | 0.7750000000000000 | 0 | 0.7750000000000000 | ||||||||||||||||
| linked | 6212 | G6212T|(ORF1ab_polyprotein:G5947T(A1983S))|(ORF1a_polyprotein:G5947T(A1983S)) | 779 | 0.704 | 1412 | 0.009 | 2 | 0.400 | 7348 | 0.063 | 87 | 0.000 | 5 | 0.7760000000000000 | 0.4 | 1.176 | |||||||||||||
| 6229 | A6229G|(ORF1ab_polyprotein:A5964G(K1988K))|(ORF1a_polyprotein:A5964G(K1988K)) | 993 | 0.912 | 1130 | 0.007 | 5619 | 0.049 | 23 | 0.000 | 4 | 0.9680000000000000 | 0 | 0.9680000000000000 | ||||||||||||||||
| 6286 | RATG13 | C6286T|(ORF1ab_polyprotein:C6021T(T2007T))|(ORF1a_polyprotein:C6021T(T2007T)) | 7 | 0.000 | 5 | 0.000 | 53732 | 0.638 | 3 | 0.638 | 0 | 0.638 | |||||||||||||||||
| 6313 | A6313T|(ORF1ab_polyprotein:A6048T(T2016T))|(ORF1a_polyprotein:A6048T(T2016T)) | 20428 | 0.496 | 33 | 0.000 | 21 | 0.000 | 12 | 0.000 | 4 | 0.496 | 0 | 0.496 | ||||||||||||||||
| 6450 | T6450C|(ORF1ab_polyprotein:T6185C(L2062P))|(ORF1a_polyprotein:T6185C(L2062P)) | 15 | 0.000 | 28 | 0.000 | 15 | 0.000 | 34041 | 0.403 | 4 | 0.403 | 0 | 0.403 | ||||||||||||||||
| 6510 | A6510G|(ORF1ab_polyprotein:A6245G(N2082S))|(ORF1a_polyprotein:A6245G(N2082S)) | 20426 | 0.495 | 10 | 0.000 | 72691 | 0.991 | 7 | 0.000 | 4 | 1.486 | 0 | 1.486 | ||||||||||||||||
| 6633 | RATG13 | C6633T|(ORF1ab_polyprotein:C6368T(A2123V))|(ORF1a_polyprotein:C6368T(A2123V)) | 2403 | 0.995 | 1 | 0.000 | 12815 | 0.864 | 3 | 1.859 | 0.0 | 1.859 | |||||||||||||||||
| 6648 | C6648A|(ORF1ab_polyprotein:C6383A(A2128D))|(ORF1a_polyprotein:C6383A(A2128D)) | 2 | 0.001 | 78 | 0.003 | 7268 | 0.490 | 2 | 0.000 | 4 | 0.491 | 0.003 | 0.494 | ||||||||||||||||
| 6651 | C6651T|(ORF1ab_polyprotein:C6386T(A2129V))|(ORF1a_polyprotein:C6386T(A2129V)) | 2430 | 0.998 | 7279 | 0.491 | 2 | 1.4890000000000000 | 0 | 1.4890000000000000 | ||||||||||||||||||||
| 7281 | A7281T|(ORF1ab_polyprotein:A7016T(Y2339F))|(ORF1a_polyprotein:A7016T(Y2339F)) | 27 | 0.004 | 20 | 0.004 | 49 | 0.003 | 6 | 0.002 | 27 | 0.001 | 3777 | 0.324 | 2 | 0.000 | 7 | 0.328 | 0.010000000000000000 | 0.338 | ||||||||||
| 7367 | A7367G|(ORF1ab_polyprotein:A7102G(I2368V))|(ORF1a_polyprotein:A7102G(I2368V)) | 1807 | 0.996 | 1 | 0.000 | 1 | 0.000 | 1 | 0.000 | 2 | 0.000 | 9936 | 0.825 | 6 | 1.821 | 0.0 | 1.821 | ||||||||||||
| 7480 | T7480G|(ORF1ab_polyprotein:T7215G(N2405K))|(ORF1a_polyprotein:T7215G(N2405K)) | 1791 | 0.999 | 5 | 0.001 | 3 | 0.001 | 11 | 0.001 | 1 | 0.000 | 8 | 0.000 | 9925 | 0.847 | 4 | 0.001 | 8 | 1.8480000000000000 | 0.002 | 1.8500000000000000 | ||||||||
| 7764 | C7764T|(ORF1ab_polyprotein:C7499T(S2500F))|(ORF1a_polyprotein:C7499T(S2500F)) | 1 | 0.250 | 406 | 0.998 | 2 | 1.248 | 0 | 1.248 | ||||||||||||||||||||
| 7829 | G7829T|(ORF1ab_polyprotein:G7564T(V2522F))|(ORF1a_polyprotein:G7564T(V2522F)) | 3 | 0.000 | 1123 | 0.001 | 256 | 0.001 | 535 | 0.001 | 392 | 0.002 | 43673 | 0.351 | 31 | 0.000 | 7 | 0.352 | 0.004 | 0.356 | ||||||||||
| 8039 | G8039A|(ORF1ab_polyprotein:G7774A(D2592N))|(ORF1a_polyprotein:G7774A(D2592N)) | 36183 | 0.999 | 57 | 0.000 | 119 | 0.001 | 37 | 0.000 | 22 | 0.000 | 123777 | 0.995 | 3 | 0.000 | 7 | 1.995 | 0.0 | 1.995 | ||||||||||
| 8080 | A8080T|(ORF1ab_polyprotein:A7815T(P2605P))|(ORF1a_polyprotein:A7815T(P2605P)) | 35963 | 0.993 | 1133 | 0.002 | 299 | 0.002 | 591 | 0.001 | 509 | 0.002 | 123976 | 0.997 | 54 | 0.001 | 7 | 1.9930000000000000 | 0.005 | 1.9980000000000000 | ||||||||||
| 8090 | C8090T|(ORF1ab_polyprotein:C7825T(L2609F))|(ORF1a_polyprotein:C7825T(L2609F)) | 16884 | 0.466 | 12 | 0.000 | 2 | 0.000 | 4 | 0.000 | 6 | 0.000 | 4 | 0.000 | 2 | 0.000 | 7 | 0.466 | 0.0 | 0.466 | ||||||||||
| 8205 | A8205G|(ORF1ab_polyprotein:A7940G(E2647G))|(ORF1a_polyprotein:A7940G(E2647G)) | 795 | 0.997 | 60 | 0.000 | 167 | 0.003 | 55 | 0.000 | 4 | 1.0 | 0 | 1.0 | ||||||||||||||||
| linked | 8299 | C8299T|(ORF1ab_polyprotein:C8034T(N2678N))|(ORF1a_polyprotein:C8034T(N2678N)) | 26 | 0.000 | 1 | 0.250 | 2 | 0.200 | 54000 | 0.984 | 59352 | 0.218 | 5 | 1.202 | 0.45 | 1.652 | |||||||||||||
| 8344 | C8344T|(ORF1ab_polyprotein:C8079T(D2693D))|(ORF1a_polyprotein:C8079T(D2693D)) | 21 | 0.000 | 53382 | 0.993 | 58939 | 0.221 | 3 | 1.214 | 0 | 1.214 | ||||||||||||||||||
| linked | 8390 | A8390G|(ORF1ab_polyprotein:A8125G(I2709V))|(ORF1a_polyprotein:A8125G(I2709V)) | 27 | 0.000 | 1 | 0.333 | 2 | 0.667 | 53450 | 0.994 | 59063 | 0.221 | 5 | 1.215 | 1.0 | 2.215 | |||||||||||||
| 8471 | A8471C|(ORF1ab_polyprotein:A8206C(N2736H))|(ORF1a_polyprotein:A8206C(N2736H)) | 5 | 0.002 | 1 | 0.000 | 2 | 0.000 | 17141 | 0.998 | 4 | 1.0 | 0.0 | 1.0 | ||||||||||||||||
| 8502 | C8502T|(ORF1ab_polyprotein:C8237T(T2746I))|(ORF1a_polyprotein:C8237T(T2746I)) | 2 | 0.001 | 4 | 0.000 | 1 | 0.000 | 1 | 0.000 | 7238 | 0.419 | 2 | 0.000 | 6 | 0.42 | 0.0 | 0.42 | ||||||||||||
| 8590 | A8590G|(ORF1ab_polyprotein:A8325G(K2775K))|(ORF1a_polyprotein:A8325G(K2775K)) | 2639 | 0.995 | 4 | 0.000 | 5 | 0.000 | 12 | 0.000 | 4548 | 0.259 | 2 | 0.000 | 6 | 1.254 | 0.0 | 1.254 | ||||||||||||
| 8880 | C8880T|(ORF1ab_polyprotein:C8615T(T2872M))|(ORF1a_polyprotein:C8615T(T2872M)) | 5670 | 0.996 | 4 | 0.000 | 34814 | 0.742 | 4 | 0.000 | 4 | 1.738 | 0 | 1.738 | ||||||||||||||||
| 8917 | C8917T|(ORF1ab_polyprotein:C8652T(F2884F))|(ORF1a_polyprotein:C8652T(F2884F)) | 5679 | 0.998 | 2 | 0.000 | 35402 | 0.740 | 3 | 1.738 | 0 | 1.738 | ||||||||||||||||||
| 9042 | C9042T|(ORF1ab_polyprotein:C8777T(S2926F))|(ORF1a_polyprotein:C8777T(S2926F)) | 5586 | 0.997 | 1 | 0.000 | 34923 | 0.743 | 1 | 0.000 | 4 | 1.74 | 0 | 1.74 | ||||||||||||||||
| 9205 | T9205C|(ORF1ab_polyprotein:T8940C(D2980D))|(ORF1a_polyprotein:T8940C(D2980D)) | 16 | 0.000 | 3 | 0.000 | 18 | 0.000 | 9 | 1.000 | 16 | 0.001 | 5 | 1.001 | 0.0 | 1.001 | ||||||||||||||
| 9434 | G9434T|(ORF1ab_polyprotein:G9169T(V3057L))|(ORF1a_polyprotein:G9169T(V3057L)) | 19480 | 0.799 | 71 | 0.002 | 48820 | 0.836 | 48 | 0.001 | 4 | 1.638 | 0 | 1.638 | ||||||||||||||||
| 9440 | T9440A|(ORF1ab_polyprotein:T9175A(C3059S))|(ORF1a_polyprotein:T9175A(C3059S)) | 19697 | 0.798 | 54 | 0.002 | 57875 | 0.991 | 47 | 0.001 | 4 | 1.792 | 0 | 1.792 | ||||||||||||||||
| 9711 | C9711T|(ORF1ab_polyprotein:C9446T(S3149F))|(ORF1a_polyprotein:C9446T(S3149F)) | 11 | 0.000 | 3 | 0.000 | 9 | 0.000 | 1 | 0.000 | 2 | 0.000 | 57916 | 0.629 | 1 | 0.000 | 7 | 0.629 | 0.0 | 0.629 | ||||||||||
| 9867 | T9867C|(ORF1ab_polyprotein:T9602C(L3201P))|(ORF1a_polyprotein:T9602C(L3201P)) | 32 | 0.000 | 9 | 0.000 | 35 | 0.000 | 20 | 0.000 | 16 | 0.000 | 33942 | 0.367 | 7 | 0.000 | 7 | 0.367 | 0.0 | 0.367 | ||||||||||
| 9996 | C9996T|(ORF1ab_polyprotein:C9731T(S3244L))|(ORF1a_polyprotein:C9731T(S3244L)) | 3091 | 0.676 | 14009 | 0.906 | 2 | 1.582 | 0 | 1.582 | ||||||||||||||||||||
| 10138 | RATG13 | C10138T|(ORF1ab_polyprotein:C9873T(N3291N))|(ORF1a_polyprotein:C9873T(N3291N)) | 3122 | 0.676 | 14098 | 0.905 | 2 | 1.581 | 0 | 1.581 | |||||||||||||||||||
| 10353 | A10353G|(ORF1ab_polyprotein:A10088G(K3363R))|(ORF1a_polyprotein:A10088G(K3363R)) | 21989 | 0.683 | 51 | 0.000 | 19 | 0.000 | 40 | 0.000 | 55 | 0.001 | 63564 | 0.766 | 60 | 0.001 | 7 | 1.4500000000000000 | 0.001 | 1.451 | ||||||||||
| 10474 | C10474T|(ORF1ab_polyprotein:C10209T(F3403F))|(ORF1a_polyprotein:C10209T(F3403F)) | 8767 | 0.272 | 9 | 0.000 | 2 | 0.000 | 10 | 0.000 | 8 | 0.000 | 12484 | 0.151 | 9 | 0.000 | 7 | 0.42300000000000000 | 0.0 | 0.42300000000000000 | ||||||||||
| 10747 | C10747T|(ORF1ab_polyprotein:C10482T(N3494N))|(ORF1a_polyprotein:C10482T(N3494N)) | 1 | 0.000 | 10 | 0.000 | 82042 | 0.446 | 1 | 0.000 | 4 | 0.446 | 0.0 | 0.446 | ||||||||||||||||
| 11451 | A11451G|(ORF1ab_polyprotein:A11186G(Q3729R))|(ORF1a_polyprotein:A11186G(Q3729R)) | 1 | 0.000 | 49 | 0.001 | 3 | 0.000 | 62923 | 0.821 | 4 | 0.000 | 5 | 0.821 | 0.001 | 0.822 | ||||||||||||||
| 11514 | C11514T|(ORF1ab_polyprotein:C11249T(T3750I))|(ORF1a_polyprotein:C11249T(T3750I)) | 25 | 0.028 | 5286 | 0.970 | 2 | 0.998 | 0 | 0.998 | ||||||||||||||||||||
| 12439 | RATG13 | C12439A|(ORF1ab_polyprotein:C12174A(P4058P))|(ORF1a_polyprotein:C12174A(P4058P)) | 24 | 0.002 | 22 | 0.001 | 32389 | 0.906 | 8 | 0.000 | 4 | 0.908 | 0.001 | 0.909 | |||||||||||||||
| 12789 | C12789T|(ORF1ab_polyprotein:C12524T(T4175I))|(ORF1a_polyprotein:C12524T(T4175I)) | 4809 | 0.999 | 2278 | 0.154 | 4379 | 0.709 | 3 | 1.862 | 0 | 1.862 | ||||||||||||||||||
| 12797 | G12797A|(ORF1ab_polyprotein:G12532A(G4178S))|(ORF1a_polyprotein:G12532A(G4178S)) | 2 | 0.000 | 8443 | 0.616 | 2 | 0.616 | 0 | 0.616 | ||||||||||||||||||||
| linked | 12815 | RATG13 | C12815T|(ORF1ab_polyprotein:C12550T(L4184L))|(ORF1a_polyprotein:C12550T(L4184L)) | 4767 | 0.988 | 1 | 1.000 | 2283 | 0.167 | 4360 | 0.990 | 4 | 2.145 | 1.0 | 3.145 | ||||||||||||||
| linked | 12880 | C12880T|(ORF1ab_polyprotein:C12615T(I4205I))|(ORF1a_polyprotein:C12615T(I4205I)) | 4818 | 0.998 | 3 | 1.000 | 2276 | 0.166 | 4364 | 0.992 | 4 | 2.1560000000000000 | 1.0 | 3.1560000000000000 | |||||||||||||||
| 13264 | C13264T|(ORF1ab_polyprotein:C12999T(H4333H))|(ORF1a_polyprotein:C12999T(H4333H)) | 2 | 0.000 | 26 | 0.000 | 3285 | 0.994 | 13 | 0.000 | 1 | 0.000 | 5 | 0.994 | 0.0 | 0.994 | ||||||||||||||
| 13289 | T13289C|(ORF1ab_polyprotein:T13024C(F4342L))|(ORF1a_polyprotein:T13024C(F4342L)) | 53 | 0.000 | 54 | 0.000 | 28613 | 0.651 | 1 | 0.000 | 4 | 0.651 | 0.0 | 0.651 | ||||||||||||||||
| 13290 | T13290C|(ORF1ab_polyprotein:T13025C(F4342S))|(ORF1a_polyprotein:T13025C(F4342S)) | 3495 | 0.524 | 70 | 0.000 | 1 | 0.000 | 69 | 0.000 | 2 | 0.000 | 3 | 0.000 | 6 | 0.524 | 0.0 | 0.524 | ||||||||||||
| linked | 13339 | T13339C|(ORF1ab_polyprotein:T13074C(N4358N))|(ORF1a_polyprotein:T13074C(N4358N)) | 3126 | 0.469 | 393948 | 0.983 | 3141 | 0.985 | 1 | 1.000 | 214859 | 0.981 | 1 | 1.000 | 1 | 1.000 | 14689 | 0.341 | 3131 | 0.470 | 9 | 2.2650000000000000 | 4.964 | 7.229 | |||||
| 13680 | C13680T|(ORF1ab_polyprotein:C13416T(Y4472Y)) | 14 | 0.000 | 23 | 0.000 | 4 | 0.000 | 15 | 0.000 | 87461 | 0.425 | 7 | 0.000 | 6 | 0.425 | 0.0 | 0.425 | ||||||||||||
| 13711 | A13711G|(ORF1ab_polyprotein:A13447G(K4483E)) | 49266 | 0.667 | 76 | 0.000 | 9 | 0.000 | 34 | 0.000 | 18 | 0.000 | 16 | 0.000 | 6 | 0.667 | 0.0 | 0.667 | ||||||||||||
| 14126 | G14126A|(ORF1ab_polyprotein:G13862A(S4621N)) | 13 | 0.000 | 30 | 0.000 | 20 | 0.000 | 11 | 0.000 | 4 | 0.000 | 103733 | 0.820 | 4 | 0.000 | 7 | 0.82 | 0.0 | 0.82 | ||||||||||
| linked | 14135 | C14135A|(ORF1ab_polyprotein:C13871A(P4624H)) | 13 | 0.000 | 614 | 0.002 | 1 | 0.042 | 959 | 0.001 | 679 | 0.001 | 253 | 0.001 | 116 | 0.001 | 36 | 0.001 | 8 | 0.044000000000000000 | 0.005 | 0.049 | |||||||
| 14150 | A14150G|(ORF1ab_polyprotein:A13886G(Y4629C)) | 30 | 0.000 | 1 | 0.333 | 60 | 0.000 | 33 | 0.000 | 15 | 0.000 | 4 | 0.000 | 11 | 0.000 | 7 | 0.333 | 0.0 | 0.333 | ||||||||||
| 14156 | C14156A|(ORF1ab_polyprotein:C13892A(S4631*)) | 824 | 0.002 | 1 | 0.500 | 1347 | 0.002 | 868 | 0.001 | 317 | 0.001 | 140 | 0.001 | 18 | 0.000 | 7 | 0.501 | 0.006 | 0.507 | ||||||||||
| 14256 | A14256T|(ORF1ab_polyprotein:A13992T(K4664N)) | 1 | 0.000 | 336 | 0.001 | 1 | 0.333 | 579 | 0.001 | 670 | 0.001 | 270 | 0.001 | 96 | 0.001 | 57 | 0.001 | 8 | 0.335 | 0.004 | 0.339 | ||||||||
| linked | 14258 | A14258C|(ORF1ab_polyprotein:A13994C(Y4665S)) | 15 | 0.000 | 1608 | 0.004 | 1 | 0.333 | 2572 | 0.004 | 1 | 0.167 | 1871 | 0.003 | 660 | 0.003 | 313 | 0.002 | 293 | 0.004 | 9 | 0.339 | 0.18100000000000000 | 0.52 | |||||
| 14269 | G14269C|(ORF1ab_polyprotein:G14005C(E4669Q)) | 262 | 0.001 | 1 | 0.333 | 488 | 0.001 | 491 | 0.001 | 177 | 0.001 | 58 | 0.000 | 35 | 0.001 | 7 | 0.334 | 0.004 | 0.338 | ||||||||||
| linked | 14276 | G14276T|(ORF1ab_polyprotein:G14012T(R4671M)) | 3 | 0.000 | 1293 | 0.003 | 1 | 0.333 | 2193 | 0.003 | 1 | 0.143 | 1549 | 0.002 | 580 | 0.002 | 242 | 0.002 | 58 | 0.001 | 9 | 0.336 | 0.153 | 0.489 | |||||
| 14290 | G14290T|(ORF1ab_polyprotein:G14026T(D4676Y)) | 17 | 0.000 | 949 | 0.003 | 1569 | 0.002 | 948 | 0.001 | 328 | 0.001 | 136 | 0.001 | 32677 | 0.490 | 7 | 0.491 | 0.007 | 0.498 | ||||||||||
| 14290 | G14290T|(ORF1ab_polyprotein:GAC14026-14028TAG(D4676*)) | 6 | 0.000 | 1 | 0.333 | 11 | 0.000 | 7 | 0.000 | 3 | 0.000 | 2 | 0.000 | 6 | 0.333 | 0.0 | 0.333 | ||||||||||||
| 14292 | C14292G|(ORF1ab_polyprotein:GAC14026-14028TAG(D4676*)) | 6 | 0.000 | 1 | 0.333 | 11 | 0.000 | 7 | 0.000 | 3 | 0.000 | 2 | 0.000 | 6 | 0.333 | 0.0 | 0.333 | ||||||||||||
| 14299 | T14299A|(ORF1ab_polyprotein:T14035A(F4679I)) | 317 | 0.001 | 1 | 0.333 | 488 | 0.001 | 576 | 0.001 | 179 | 0.001 | 57 | 0.000 | 65 | 0.001 | 7 | 0.334 | 0.004 | 0.338 | ||||||||||
| 14302 | A14302C|(ORF1ab_polyprotein:AAA14038-14040CAC(K4680H)) | 3 | 0.000 | 37 | 0.000 | 1 | 0.333 | 55 | 0.000 | 47 | 0.000 | 21 | 0.000 | 5 | 0.000 | 4 | 0.000 | 8 | 0.333 | 0.0 | 0.333 | ||||||||
| 14304 | A14304C|(ORF1ab_polyprotein:AAA14038-14040CAC(K4680H)) | 3 | 0.000 | 37 | 0.000 | 1 | 0.333 | 55 | 0.000 | 47 | 0.000 | 21 | 0.000 | 5 | 0.000 | 4 | 0.000 | 8 | 0.333 | 0.0 | 0.333 | ||||||||
| 14306 | A14306C|(ORF1ab_polyprotein:A14042C(Y4681S)) | 20 | 0.001 | 381 | 0.001 | 1 | 0.333 | 577 | 0.001 | 429 | 0.001 | 157 | 0.001 | 61 | 0.000 | 56 | 0.001 | 8 | 0.335 | 0.004 | 0.339 | ||||||||
| 14328 | A14328T|(ORF1ab_polyprotein:A14064T(P4688P)) | 386 | 0.001 | 1 | 0.333 | 616 | 0.001 | 450 | 0.001 | 164 | 0.001 | 77 | 0.001 | 33 | 0.001 | 7 | 0.335 | 0.004 | 0.339 | ||||||||||
| 14330 | A14330C|(ORF1ab_polyprotein:A14066C(N4689T)) | 16 | 0.000 | 1006 | 0.003 | 1 | 0.333 | 1664 | 0.003 | 608 | 0.001 | 234 | 0.001 | 106 | 0.001 | 147 | 0.002 | 8 | 0.336 | 0.008 | 0.34400000000000000 | ||||||||
| 14343 | T14343C|(ORF1ab_polyprotein:T14079C(C4693C)) | 4 | 0.000 | 45 | 0.000 | 92 | 0.000 | 78 | 0.000 | 229 | 0.001 | 104835 | 0.821 | 13 | 0.000 | 7 | 0.821 | 0.001 | 0.822 | ||||||||||
| 14367 | T14367G|(ORF1ab_polyprotein:T14103G(H4701Q)) | 8 | 0.000 | 279 | 0.001 | 1 | 0.333 | 483 | 0.001 | 189 | 0.000 | 62 | 0.000 | 51 | 0.000 | 35 | 0.001 | 8 | 0.334 | 0.002 | 0.336 | ||||||||
| 14380 | A14380C|(ORF1ab_polyprotein:A14116C(N4706H)) | 579 | 0.002 | 1 | 0.333 | 920 | 0.001 | 406 | 0.001 | 139 | 0.001 | 84 | 0.001 | 77 | 0.001 | 7 | 0.335 | 0.005 | 0.34 | ||||||||||
| linkedubiq | 14408 | Delta | C14408T|(ORF1ab_polyprotein:C14144T(P4715L)) | 37250 | 0.997 | 362777 | 0.997 | 12238 | 0.999 | 653661 | 0.998 | 13277 | 0.999 | 6362 | 0.999 | 657489 | 0.999 | 255464 | 0.999 | 4540 | 0.999 | 142448 | 0.998 | 71441 | 0.998 | 11 | 3.992 | 6.990000000000000 | 10.982 |
| 14694 | C14694T|(ORF1ab_polyprotein:C14430T(D4810D)) | 4 | 0.001 | 1 | 0.000 | 13774 | 0.766 | 1 | 0.000 | 4 | 0.767 | 0.0 | 0.767 | ||||||||||||||||
| 14724 | C14724T|(ORF1ab_polyprotein:C14460T(F4820F)) | 2838 | 0.595 | 1 | 0.000 | 1 | 0.000 | 1 | 0.000 | 1 | 0.000 | 1 | 0.000 | 1 | 0.000 | 7 | 0.595 | 0.0 | 0.595 | ||||||||||
| 14801 | A14801G|(ORF1ab_polyprotein:A14537G(D4846G)) | 1 | 0.000 | 3 | 0.000 | 1 | 0.000 | 5 | 0.000 | 15 | 0.000 | 16908 | 0.845 | 3 | 0.000 | 7 | 0.845 | 0.0 | 0.845 | ||||||||||
| 15007 | G15007A|(ORF1ab_polyprotein:G14743A(D4915N)) | 1422 | 0.463 | 2 | 0.000 | 2 | 0.000 | 1 | 0.000 | 4 | 0.463 | 0.0 | 0.463 | ||||||||||||||||
| 15201 | A15201G|(ORF1ab_polyprotein:A14937G(V4979V)) | 11993 | 0.349 | 12 | 0.000 | 2 | 0.000 | 30 | 0.001 | 19 | 0.000 | 43 | 0.000 | 21 | 0.000 | 7 | 0.349 | 0.001 | 0.35 | ||||||||||
| 15372 | G15372T|(ORF1ab_polyprotein:G15108T(T5036T)) | 13110 | 0.387 | 44 | 0.001 | 5 | 0.001 | 71 | 0.000 | 1 | 0.000 | 1 | 0.000 | 22 | 0.000 | 56 | 0.000 | 12 | 0.000 | 9 | 0.388 | 0.001 | 0.389 | ||||||
| 15480 | C15480A|(ORF1ab_polyprotein:C15216A(T5072T)) | 1234 | 0.087 | 430 | 0.003 | 132 | 0.003 | 748 | 0.002 | 381 | 0.004 | 848 | 0.002 | 681 | 0.001 | 48615 | 0.818 | 17 | 0.001 | 9 | 0.9090000000000000 | 0.012 | 0.9210000000000000 | ||||||
| linked | 15540 | RATG13 | C15540T|(ORF1ab_polyprotein:C15276T(V5092V)) | 1235 | 0.087 | 4 | 0.000 | 2 | 0.000 | 9 | 0.000 | 1 | 0.167 | 10 | 0.000 | 20 | 0.000 | 15 | 0.000 | 49589 | 0.815 | 2 | 0.000 | 10 | 0.9020000000000000 | 0.167 | 1.069 | ||
| 15737 | T15737A|(ORF1ab_polyprotein:T15473A(F5158Y)) | 28 | 0.001 | 17 | 0.001 | 19 | 0.001 | 65 | 0.000 | 42418 | 0.866 | 14 | 0.000 | 6 | 0.867 | 0.002 | 0.869 | ||||||||||||
| 16182 | G16182T|(ORF1ab_polyprotein:G15918T(R5306S)) | 42 | 0.001 | 536 | 0.002 | 203 | 0.002 | 1133 | 0.002 | 497 | 0.003 | 1562 | 0.001 | 227 | 0.001 | 40228 | 0.487 | 8 | 0.491 | 0.008 | 0.499 | ||||||||
| linked | 16224 | T16224C|(ORF1ab_polyprotein:T15960C(H5320H)) | 10 | 0.000 | 66 | 0.000 | 25 | 0.000 | 170 | 0.000 | 2 | 0.500 | 70 | 0.000 | 524 | 0.000 | 76391 | 0.334 | 82377 | 0.996 | 9 | 1.33 | 0.5 | 1.83 | |||||
| 16225 | A16225G|(ORF1ab_polyprotein:A15961G(T5321A)) | 28568 | 0.494 | 21 | 0.000 | 15 | 0.000 | 59 | 0.000 | 11 | 0.000 | 111 | 0.000 | 17 | 0.000 | 11 | 0.000 | 8 | 0.494 | 0.0 | 0.494 | ||||||||
| 16957 | G16957A|(ORF1ab_polyprotein:G16693A(V5565M)) | 26447 | 0.439 | 1 | 0.000 | 4 | 0.000 | 2 | 0.000 | 2 | 0.000 | 143879 | 0.857 | 3 | 0.000 | 7 | 1.296 | 0.0 | 1.296 | ||||||||||
| 17088 | T17088A|(ORF1ab_polyprotein:T16824A(P5608P)) | 96 | 0.001 | 184 | 0.002 | 127 | 0.002 | 215 | 0.002 | 267 | 0.002 | 526 | 0.001 | 52 | 0.001 | 69 | 0.001 | 63200 | 0.419 | 62 | 0.001 | 10 | 0.422 | 0.010000000000000000 | 0.432 | ||||
| 17205 | A17205G|(ORF1ab_polyprotein:A16941G(K5647K)) | 4 | 0.001 | 3 | 0.000 | 7 | 0.000 | 11 | 0.000 | 4 | 0.000 | 5 | 0.000 | 29 | 0.000 | 2 | 0.000 | 2 | 0.000 | 129561 | 0.861 | 7 | 0.000 | 11 | 0.862 | 0.0 | 0.862 | ||
| linked | 18163 | A18163G|(ORF1ab_polyprotein:A17899G(I5967V)) | 7234 | 0.478 | 42611 | 0.998 | 34600 | 0.997 | 51898 | 0.996 | 50839 | 0.997 | 25072 | 0.996 | 1 | 1.000 | 23543 | 0.999 | 10251 | 0.159 | 50246 | 0.999 | 10 | 2.633 | 5.986 | 8.619 | |||
| 18258 | T18258C|(ORF1ab_polyprotein:T17994C(F5998F)) | 7 | 0.000 | 6730 | 0.311 | 8 | 0.000 | 92 | 0.004 | 1 | 0.000 | 5 | 0.315 | 0.0 | 0.315 | ||||||||||||||
| 18395 | C18395T|(ORF1ab_polyprotein:C18131T(A6044V)) | 4280 | 0.597 | 2 | 0.000 | 1 | 0.000 | 4 | 0.000 | 4 | 0.597 | 0.0 | 0.597 | ||||||||||||||||
| 18424 | A18424G|(ORF1ab_polyprotein:A18160G(N6054D)) | 4873 | 0.679 | 7 | 0.000 | 5 | 0.000 | 10 | 0.000 | 16381 | 0.754 | 1 | 0.000 | 6 | 1.433 | 0.0 | 1.433 | ||||||||||||
| 18555 | RATG13 | C18555T|(ORF1ab_polyprotein:C18291T(D6097D)) | 20295 | 0.307 | 19 | 0.000 | 17 | 0.000 | 6 | 0.000 | 7 | 0.000 | 9 | 0.000 | 6 | 0.307 | 0.0 | 0.307 | |||||||||||
| 18747 | C18747T|(ORF1ab_polyprotein:C18483T(V6161V)) | 24656 | 0.374 | 19 | 0.000 | 24 | 0.000 | 15 | 0.000 | 14 | 0.000 | 16 | 0.000 | 6 | 0.374 | 0.0 | 0.374 | ||||||||||||
| linked | 18894 | C18894T|(ORF1ab_polyprotein:C18630T(C6210C)) | 1159 | 0.460 | 1 | 1.000 | 1 | 0.500 | 5 | 1.000 | 1 | 1.000 | 1 | 1.000 | 1 | 1.000 | 202636 | 0.996 | 3 | 0.000 | 3085 | 0.993 | 10 | 2.453 | 5.496 | 7.949 | |||
| 19061 | T19061G|(ORF1ab_polyprotein:T18797G(V6266G)) | 1 | 1.000 | 237 | 0.001 | 66 | 0.001 | 14 | 0.005 | 4 | 1.006 | 0.001 | 1.007 | ||||||||||||||||
| 19454 | C19454T|(ORF1ab_polyprotein:C19190T(T6397M)) | 38021 | 0.375 | 4 | 0.000 | 5 | 0.000 | 8 | 0.000 | 7 | 0.000 | 11 | 0.000 | 15 | 0.000 | 7 | 0.375 | 0.0 | 0.375 | ||||||||||
| 19613 | G19613A|(ORF1ab_polyprotein:G19349A(R6450K)) | 19 | 0.000 | 41 | 0.000 | 53 | 0.000 | 122 | 0.000 | 51 | 0.000 | 176311 | 0.885 | 15 | 0.000 | 7 | 0.885 | 0.0 | 0.885 | ||||||||||
| 19706 | A19706G|(ORF1ab_polyprotein:A19442G(N6481S)) | 1 | 0.000 | 13 | 0.000 | 10 | 0.000 | 32 | 0.000 | 10 | 0.000 | 149824 | 0.769 | 15 | 0.000 | 7 | 0.769 | 0.0 | 0.769 | ||||||||||
| 19824 | G19824A|(ORF1ab_polyprotein:G19560A(E6520E)) | 1 | 0.000 | 8376 | 0.993 | 3 | 0.000 | 16486 | 0.167 | 1 | 0.000 | 5 | 1.16 | 0.0 | 1.16 | ||||||||||||||
| 20302 | G20302A|(ORF1ab_polyprotein:G20038A(E6680K)) | 1997 | 0.477 | 4 | 0.000 | 31222 | 0.994 | 3 | 1.471 | 0.0 | 1.471 | ||||||||||||||||||
| 20407 | RATG13 | T20407C|(ORF1ab_polyprotein:T20143C(F6715L)) | 1384 | 0.242 | 1600 | 0.184 | 35 | 0.000 | 31656 | 0.983 | 1 | 0.000 | 5 | 1.409 | 0.0 | 1.409 | |||||||||||||
| 20745 | T20745C|(ORF1ab_polyprotein:T20481C(N6827N)) | 17712 | 0.594 | 36 | 0.000 | 10 | 0.000 | 158644 | 0.998 | 15 | 0.000 | 5 | 1.592 | 0.0 | 1.592 | ||||||||||||||
| 20990 | 20990-insertGCA|(ORF1ab_polyprotein:TTG20725-20727TGCATGinsert(L6909CM)) | 3 | 0.750 | 1 | 0.000 | 2 | 0.75 | 0 | 0.75 | ||||||||||||||||||||
| 21137 | A21137G|(ORF1ab_polyprotein:A20873G(K6958R)) | 10 | 0.000 | 310 | 0.001 | 36 | 0.000 | 101904 | 0.811 | 43 | 0.000 | 5 | 0.812 | 0.0 | 0.812 | ||||||||||||||
| 21268 | G21268-21268del|(ORF1ab_polyprotein:21004-21004del(7002fs)) | 1 | 0.000 | 34798 | 0.330 | 2 | 0.33 | 0 | 0.33 | ||||||||||||||||||||
| 21327 | C21327T|(ORF1ab_polyprotein:C21063T(V7021V)) | 18119 | 0.546 | 35 | 0.000 | 8 | 0.000 | 4 | 0.000 | 18 | 0.000 | 5 | 0.546 | 0.0 | 0.546 | ||||||||||||||
| 21604 | G21604T|(surface_glycoprotein:G42T(Q14H)) | 5680 | 0.830 | 9 | 0.000 | 2 | 0.83 | 0 | 0.83 | ||||||||||||||||||||
| 21617 | ACA21617-21619del|(surface_glycoprotein:55-57del(T19del)) | 14096 | 0.668 | 61736 | 0.887 | 108259 | 0.998 | 1 | 0.000 | 4 | 2.553 | 0 | 2.553 | ||||||||||||||||
| 21633 | T21633C|(surface_glycoprotein:T71C(L24S)) | 20416 | 0.943 | 62716 | 0.888 | 109680 | 0.998 | 1 | 0.000 | 4 | 2.829 | 0 | 2.829 | ||||||||||||||||
| 21635 | C21635T|(surface_glycoprotein:C73T(P25S)) | 14798 | 0.684 | 62695 | 0.888 | 109656 | 0.998 | 3 | 2.5700000000000000 | 0 | 2.5700000000000000 | ||||||||||||||||||
| 21642 | C21642A|(surface_glycoprotein:C80A(A27E)) | 20297 | 0.938 | 62787 | 0.887 | 109734 | 0.999 | 3 | 2.824 | 0 | 2.824 | ||||||||||||||||||
| 21657 | RATG13 | T21657C|(surface_glycoprotein:T95C(F32S)) | 20398 | 0.945 | 62640 | 0.885 | 109611 | 0.998 | 3 | 0.000 | 4 | 2.828 | 0 | 2.828 | |||||||||||||||
| 21707 | C21707T|(surface_glycoprotein:C145T(H49Y)) | 15150 | 0.997 | 62648 | 0.884 | 108656 | 0.997 | 3 | 2.878 | 0 | 2.878 | ||||||||||||||||||
| 21761 | G21761T|(surface_glycoprotein:G199T(A67S)) | 15135 | 0.995 | 1150 | 0.016 | 242 | 0.002 | 1 | 0.000 | 4 | 1.013 | 0 | 1.013 | ||||||||||||||||
| 21761 | GCTATACATGTCTCTGGGACCAATGG21761-21786del|(surface_glycoprotein:GCTATACATGTCTCTGGGACCAATGGTACT199-228TCTdel(AIHVSGTNGT67-76Sdel)) | 62258 | 0.851 | 28501 | 0.255 | 2 | 1.1060000000000000 | 0 | 1.1060000000000000 | ||||||||||||||||||||
| linked | 21765 | TACATG21765-21770del|(surface_glycoprotein:ATACATGTC202-210ATCdel(IHV68-70Idel)) | 15161 | 0.997 | 8034 | 0.110 | 9 | 0.900 | 8 | 0.000 | 2943 | 0.972 | 5 | 2.079 | 0.9 | 2.979 | |||||||||||||
| 21768 | A21768-21768del|(surface_glycoprotein:206-206del(69fs)) | 2 | 0.000 | 80917 | 0.724 | 2 | 0.724 | 0 | 0.724 | ||||||||||||||||||||
| 21780 | C21780A|(surface_glycoprotein:C218A(T73N)) | 15088 | 0.992 | 22 | 0.000 | 82842 | 0.736 | 1 | 0.000 | 4 | 1.728 | 0 | 1.728 | ||||||||||||||||
| 21782 | A21782T|(surface_glycoprotein:A220T(N74Y)) | 10 | 0.000 | 46326 | 0.412 | 3 | 0.001 | 3 | 0.413 | 0 | 0.413 | ||||||||||||||||||
| 21788 | A21788-21788del|(surface_glycoprotein:GCTATACATGTCTCTGGGACCAATGGTACT199-228TCTdel(AIHVSGTNGT67-76Sdel)) | 62258 | 0.850 | 28501 | 0.253 | 2 | 1.103 | 0 | 1.103 | ||||||||||||||||||||
| 21789 | RATG13 | C21789T|(surface_glycoprotein:C227T(T76I)) | 15150 | 0.996 | 1 | 0.000 | 82842 | 0.735 | 3 | 1.7310000000000000 | 0 | 1.7310000000000000 | |||||||||||||||||
| 21793 | G21793C|(surface_glycoprotein:G231C(K77N)) | 15185 | 0.998 | 63787 | 0.868 | 28796 | 0.255 | 3 | 2.121 | 0 | 2.121 | ||||||||||||||||||
| 21811 | C21811A|(surface_glycoprotein:C249A(V83V)) | 15140 | 0.995 | 65000 | 0.886 | 108658 | 0.996 | 1 | 0.000 | 4 | 2.8770000000000000 | 0 | 2.8770000000000000 | ||||||||||||||||
| 21823 | T21823A|(surface_glycoprotein:T261A(N87K)) | 15186 | 0.998 | 64317 | 0.877 | 108311 | 0.993 | 3 | 0.001 | 4 | 2.8690000000000000 | 0 | 2.8690000000000000 | ||||||||||||||||
| 21973 | T21973A|(surface_glycoprotein:T411A(N137K)) | 90 | 0.001 | 333 | 0.001 | 264 | 0.002 | 324 | 0.001 | 72932 | 0.693 | 57 | 0.000 | 6 | 0.694 | 0.004 | 0.698 | ||||||||||||
| 21992 | T21992C|(surface_glycoprotein:T430C(Y144H)) | 57710 | 0.700 | 1 | 0.000 | 1 | 0.000 | 1 | 0.000 | 1 | 0.000 | 13 | 0.000 | 1 | 0.000 | 7 | 0.7 | 0.0 | 0.7 | ||||||||||
| 21995 | T21995C|(surface_glycoprotein:T433C(Y145H)) | 57425 | 0.695 | 18 | 0.000 | 41 | 0.000 | 30 | 0.000 | 60 | 0.000 | 72537 | 0.689 | 40 | 0.000 | 7 | 1.384 | 0.0 | 1.384 | ||||||||||
| 22012 | A22012T|(surface_glycoprotein:A450T(K150N)) | 58981 | 0.701 | 61 | 0.001 | 197 | 0.001 | 193 | 0.001 | 189 | 0.000 | 83637 | 0.795 | 15023 | 0.095 | 7 | 1.592 | 0.002 | 1.594 | ||||||||||
| linked | 22054 | T22054G|(surface_glycoprotein:T492G(N164K)) | 67 | 0.001 | 55 | 0.001 | 164 | 0.001 | 1 | 0.111 | 130 | 0.001 | 173 | 0.000 | 86050 | 0.797 | 15322 | 0.095 | 8 | 0.894 | 0.113 | 1.0070000000000000 | |||||||
| 22079 | C22079A|(surface_glycoprotein:C517A(Q173K)) | 59102 | 0.702 | 215 | 0.003 | 698 | 0.003 | 610 | 0.004 | 639 | 0.001 | 74193 | 0.687 | 60 | 0.000 | 7 | 1.392 | 0.008 | 1.4 | ||||||||||
| 22088 | C22088T|(surface_glycoprotein:C526T(L176F)) | 52522 | 0.624 | 12 | 0.000 | 11 | 0.000 | 4 | 0.000 | 14 | 0.000 | 11848 | 0.111 | 15169 | 0.094 | 7 | 0.829 | 0.0 | 0.829 | ||||||||||
| 22088 | C22088T|(surface_glycoprotein:CTT526-528TCT(L176S)) | 12 | 0.000 | 72344 | 0.679 | 2 | 0.679 | 0 | 0.679 | ||||||||||||||||||||
| 22089 | T22089C|(surface_glycoprotein:CTT526-528TCT(L176S)) | 12 | 0.000 | 72344 | 0.679 | 2 | 0.679 | 0 | 0.679 | ||||||||||||||||||||
| 22094 | G22094A|(surface_glycoprotein:G532A(D178N)) | 39067 | 0.464 | 5 | 0.000 | 12 | 0.000 | 14 | 0.000 | 15 | 0.000 | 42429 | 0.400 | 21 | 0.000 | 7 | 0.8640000000000000 | 0.0 | 0.8640000000000000 | ||||||||||
| linked | 22101 | A22101C|(surface_glycoprotein:A539C(E180A)) | 38 | 0.000 | 52 | 0.001 | 155 | 0.001 | 1 | 0.111 | 233 | 0.001 | 262 | 0.001 | 72997 | 0.688 | 140 | 0.001 | 8 | 0.69 | 0.114 | 0.8040000000000000 | |||||||
| 22104 | G22104T|(surface_glycoprotein:G542T(G181V)) | 59078 | 0.702 | 115 | 0.002 | 355 | 0.001 | 284 | 0.002 | 262 | 0.001 | 84945 | 0.801 | 15256 | 0.096 | 7 | 1.601 | 0.004 | 1.605 | ||||||||||
| 22108 | A22108C|(surface_glycoprotein:A546C(K182N)) | 58886 | 0.700 | 7 | 0.000 | 84514 | 0.798 | 14978 | 0.095 | 4 | 1.593 | 0 | 1.593 | ||||||||||||||||
| 22115 | A22115C|(surface_glycoprotein:A553C(N185H)) | 38 | 0.000 | 16 | 0.000 | 41 | 0.000 | 48 | 0.000 | 68 | 0.000 | 73128 | 0.691 | 32 | 0.000 | 7 | 0.691 | 0.0 | 0.691 | ||||||||||
| 22119 | T22119A|(surface_glycoprotein:T557A(F186Y)) | 39081 | 0.465 | 61 | 0.001 | 227 | 0.001 | 233 | 0.001 | 207 | 0.000 | 129 | 0.001 | 139 | 0.001 | 7 | 0.468 | 0.002 | 0.47000000000000000 | ||||||||||
| linked | 22122 | A22122C|(surface_glycoprotein:A560C(K187T)) | 39116 | 0.465 | 98 | 0.001 | 316 | 0.001 | 1 | 0.111 | 373 | 0.002 | 397 | 0.001 | 112 | 0.001 | 199 | 0.001 | 8 | 0.468 | 0.115 | 0.5830000000000000 | |||||||
| 22181 | C22181T|(surface_glycoprotein:C619T(H207Y)) | 57694 | 0.700 | 6 | 0.000 | 10 | 0.000 | 4 | 0.000 | 12 | 0.000 | 84812 | 0.802 | 14933 | 0.094 | 7 | 1.596 | 0.0 | 1.596 | ||||||||||
| 22193 | A22193G|(surface_glycoprotein:A631G(N211D)) | 29 | 0.000 | 1 | 0.000 | 1 | 0.000 | 73424 | 0.657 | 4 | 0.000 | 5 | 0.657 | 0.0 | 0.657 | ||||||||||||||
| 22199 | G22199T|(surface_glycoprotein:G637T(V213L)) | 57633 | 0.661 | 8 | 0.000 | 3 | 0.000 | 2 | 0.000 | 9 | 0.000 | 1 | 0.000 | 85061 | 0.761 | 2 | 0.000 | 8 | 1.4220000000000000 | 0.0 | 1.4220000000000000 | ||||||||
| 22206 | A22206G|(surface_glycoprotein:A644G(D215G)) | 57678 | 0.661 | 38 | 0.000 | 26 | 0.000 | 11 | 0.000 | 24 | 0.000 | 28 | 0.000 | 16 | 0.000 | 34 | 0.000 | 8 | 0.661 | 0.0 | 0.661 | ||||||||
| 22206 | A22206G|(surface_glycoprotein:GAT643-645GGG(D215G)) | 10 | 0.000 | 73396 | 0.657 | 2 | 0.657 | 0 | 0.657 | ||||||||||||||||||||
| 22207 | T22207G|(surface_glycoprotein:GAT643-645GGG(D215G)) | 10 | 0.000 | 73396 | 0.657 | 2 | 0.657 | 0 | 0.657 | ||||||||||||||||||||
| 22566 | T22566C|(surface_glycoprotein:T1004C(L335S)) | 1 | 0.000 | 10 | 0.000 | 1 | 0.000 | 17 | 0.000 | 5 | 0.000 | 11548 | 0.600 | 6 | 0.6 | 0.0 | 0.6 | ||||||||||||
| 22578 | G22578A|(surface_glycoprotein:G1016A(G339D)) | 2800 | 0.686 | 42 | 0.000 | 1 | 0.000 | 43 | 0.000 | 14 | 0.000 | 3868 | 0.201 | 893 | 0.102 | 7 | 0.9890000000000000 | 0.0 | 0.9890000000000000 | ||||||||||
| 22582 | A22582C|(surface_glycoprotein:A1020C(E340D)) | 2 | 0.000 | 146 | 0.001 | 8 | 0.001 | 82 | 0.000 | 51 | 0.000 | 5175 | 0.269 | 891 | 0.102 | 7 | 0.372 | 0.001 | 0.373 | ||||||||||
| 22593 | C22593T|(surface_glycoprotein:C1031T(A344V)) | 2793 | 0.685 | 7 | 0.000 | 4 | 0.000 | 1 | 0.000 | 12392 | 0.644 | 5 | 1.3290000000000000 | 0.0 | 1.3290000000000000 | ||||||||||||||
| 22598 | A22598G|(surface_glycoprotein:AGA1036-1038GAA(R346E)) | 2805 | 0.686 | 1 | 0.000 | 17490 | 0.908 | 881 | 0.101 | 4 | 1.6950000000000000 | 0.0 | 1.6950000000000000 | ||||||||||||||||
| 22599 | G22599A|(surface_glycoprotein:AGA1036-1038GAA(R346E)) | 2805 | 0.685 | 1 | 0.000 | 17490 | 0.908 | 881 | 0.101 | 4 | 1.6940000000000000 | 0.0 | 1.6940000000000000 | ||||||||||||||||
| 22632 | G22632A|(surface_glycoprotein:G1070A(R357K)) | 717 | 0.174 | 7 | 0.000 | 7 | 0.000 | 7 | 0.000 | 17591 | 0.914 | 885 | 0.101 | 6 | 1.189 | 0.0 | 1.189 | ||||||||||||
| 22672 | T22672A|(surface_glycoprotein:T1110A(N370K)) | 2129 | 0.516 | 234 | 0.001 | 7 | 0.001 | 212 | 0.001 | 83 | 0.001 | 25 | 0.001 | 4 | 0.000 | 7 | 0.518 | 0.003 | 0.521 | ||||||||||
| 22674 | C22674A|(surface_glycoprotein:C1112A(S371Y)) | 708 | 0.172 | 195 | 0.001 | 11 | 0.001 | 175 | 0.001 | 61 | 0.001 | 17787 | 0.904 | 908 | 0.102 | 7 | 1.1790000000000000 | 0.003 | 1.1820000000000000 | ||||||||||
| 22696 | G22696T|(surface_glycoprotein:G1134T(K378N)) | 2 | 0.000 | 164 | 0.001 | 13 | 0.001 | 151 | 0.001 | 46 | 0.000 | 17478 | 0.909 | 890 | 0.101 | 7 | 1.011 | 0.002 | 1.013 | ||||||||||
| 22712 | C22712T|(surface_glycoprotein:C1150T(P384S)) | 2836 | 0.688 | 6 | 0.000 | 15 | 0.000 | 9 | 0.000 | 19136 | 0.996 | 1850 | 0.211 | 6 | 1.895 | 0.0 | 1.895 | ||||||||||||
| linkedubiq | 22770 | G22770A|(surface_glycoprotein:G1208A(R403K)) | 4054 | 0.999 | 195967 | 0.994 | 11356 | 0.993 | 206778 | 0.994 | 4 | 1.000 | 1 | 1.000 | 111666 | 0.997 | 19146 | 0.997 | 8701 | 0.997 | 9 | 3.986 | 4.985 | 8.971 | |||||
| 22799 | G22799A|(surface_glycoprotein:GGG1237-1239AAG(G413K)) | 11423 | 0.898 | 18237 | 0.813 | 915 | 0.044 | 3 | 1.755 | 0 | 1.755 | ||||||||||||||||||
| 22800 | G22800A|(surface_glycoprotein:GGG1237-1239AAG(G413K)) | 11423 | 0.898 | 18237 | 0.813 | 915 | 0.044 | 3 | 1.755 | 0 | 1.755 | ||||||||||||||||||
| 22812 | A22812C|(surface_glycoprotein:A1250C(K417T)) | 11415 | 0.897 | 1 | 0.000 | 2 | 0.897 | 0 | 0.897 | ||||||||||||||||||||
| 22812 | A22812G|(surface_glycoprotein:A1250G(K417R)) | 18247 | 0.813 | 918 | 0.044 | 2 | 0.857 | 0 | 0.857 | ||||||||||||||||||||
| 22893 | AGGTTG22893-22898del|(surface_glycoprotein:AAGGTTGGT1330-1338AGTdel(KVG444-446Sdel)) | 7771 | 0.885 | 4 | 0.001 | 19 | 0.002 | 3 | 0.888 | 0 | 0.888 | ||||||||||||||||||
| 22901 | G22901C|(surface_glycoprotein:GGTAATTAT1339-1347CGTdel(GNY447-449Rdel)) | 7824 | 0.891 | 6 | 0.002 | 19 | 0.002 | 3 | 0.895 | 0 | 0.895 | ||||||||||||||||||
| 22903 | TAATTA22903-22908del|(surface_glycoprotein:GGTAATTAT1339-1347CGTdel(GNY447-449Rdel)) | 7824 | 0.891 | 6 | 0.002 | 19 | 0.002 | 3 | 0.895 | 0 | 0.895 | ||||||||||||||||||
| 22917 | T22917A|(surface_glycoprotein:T1355A(L452Q)) | 8774 | 0.998 | 734 | 0.220 | 19 | 0.002 | 3 | 1.22 | 0 | 1.22 | ||||||||||||||||||
| 22925 | T22925G|(surface_glycoprotein:TTG1363-1365GCG(L455A)) | 8764 | 0.997 | 8 | 0.001 | 1 | 0.000 | 725 | 0.216 | 25 | 0.002 | 5 | 1.216 | 0.0 | 1.216 | ||||||||||||||
| 22926 | T22926C|(surface_glycoprotein:TTG1363-1365GCG(L455A)) | 8764 | 0.997 | 8 | 0.001 | 1 | 0.000 | 725 | 0.216 | 25 | 0.002 | 5 | 1.216 | 0.0 | 1.216 | ||||||||||||||
| 22936 | G22936T|(surface_glycoprotein:G1374T(K458N)) | 8772 | 0.998 | 12 | 0.001 | 1 | 0.001 | 1 | 0.000 | 584 | 0.174 | 24 | 0.002 | 6 | 1.175 | 0.001 | 1.176 | ||||||||||||
| 22942 | T22942G|(surface_glycoprotein:T1380G(N460K)) | 8751 | 0.995 | 729 | 0.217 | 25 | 0.002 | 3 | 1.214 | 0 | 1.214 | ||||||||||||||||||
| 22979 | T22979C|(surface_glycoprotein:T1417C(Y473H)) | 8704 | 0.990 | 2 | 0.000 | 724 | 0.218 | 20 | 0.002 | 4 | 1.21 | 0 | 1.21 | ||||||||||||||||
| 22991 | A22991G|(surface_glycoprotein:AGC1429-1431GAC(S477D)) | 7820 | 0.891 | 3 | 0.000 | 2 | 0.001 | 724 | 0.218 | 22 | 0.002 | 5 | 1.111 | 0.001 | 1.1120000000000000 | ||||||||||||||
| 22992 | G22992A|(surface_glycoprotein:AGC1429-1431GAC(S477D)) | 7820 | 0.891 | 3 | 0.000 | 2 | 0.001 | 724 | 0.218 | 22 | 0.002 | 5 | 1.111 | 0.001 | 1.1120000000000000 | ||||||||||||||
| 22997 | C22997T|(surface_glycoprotein:CCT1435-1437TTT(P479F)) | 7756 | 0.884 | 143 | 0.043 | 2 | 0.927 | 0 | 0.927 | ||||||||||||||||||||
| 22998 | C22998T|(surface_glycoprotein:CCT1435-1437TTT(P479F)) | 7756 | 0.884 | 143 | 0.043 | 2 | 0.927 | 0 | 0.927 | ||||||||||||||||||||
| 23006 | G23006A|(surface_glycoprotein:G1444A(G482S)) | 7762 | 0.887 | 576 | 0.173 | 19 | 0.002 | 3 | 1.062 | 0 | 1.062 | ||||||||||||||||||
| 23010 | T23010G|(surface_glycoprotein:T1448G(V483G)) | 7743 | 0.887 | 3 | 0.000 | 1 | 0.000 | 3 | 0.887 | 0 | 0.887 | ||||||||||||||||||
| 23015 | G23015A|(surface_glycoprotein:G1453A(G485S)) | 7740 | 0.887 | 16 | 0.001 | 1 | 0.001 | 1 | 0.000 | 2 | 0.001 | 10 | 0.001 | 6 | 0.89 | 0.001 | 0.891 | ||||||||||||
| 23019 | T23019C|(surface_glycoprotein:T1457C(F486S)) | 7739 | 0.887 | 1 | 0.000 | 724 | 0.218 | 20 | 0.002 | 4 | 1.107 | 0 | 1.107 | ||||||||||||||||
| 23027 | 23027-insertA|(surface_glycoprotein:TAC1465-1467ATCCCAACGCAAGCTCTCinsert(Y489IPTQALinsert)) | 7613 | 0.881 | 151 | 0.046 | 2 | 0.927 | 0 | 0.927 | ||||||||||||||||||||
| 23028 | 23028-insertCCCAACGCA|(surface_glycoprotein:TAC1465-1467ATCCCAACGCAAGCTCTCinsert(Y489IPTQALinsert)) | 7613 | 0.881 | 151 | 0.046 | 2 | 0.927 | 0 | 0.927 | ||||||||||||||||||||
| 23029 | 23029-insertGCTCT|(surface_glycoprotein:TAC1465-1467ATCCCAACGCAAGCTCTCinsert(Y489IPTQALinsert)) | 7613 | 0.881 | 151 | 0.046 | 2 | 0.927 | 0 | 0.927 | ||||||||||||||||||||
| 23031 | T23031C|(surface_glycoprotein:T1469C(F490S)) | 8567 | 0.992 | 3 | 0.000 | 714 | 0.216 | 8 | 0.001 | 4 | 1.209 | 0 | 1.209 | ||||||||||||||||
| 23048 | G23048A|(surface_glycoprotein:G1486A(G496S)) | 8584 | 0.994 | 567 | 0.171 | 2 | 1.165 | 0 | 1.165 | ||||||||||||||||||||
| 23054 | RATG13 | C23054T|(surface_glycoprotein:CAA1492-1494TGT(Q498C)) | 8565 | 0.991 | 151 | 0.046 | 19 | 0.002 | 3 | 1.039 | 0 | 1.039 | |||||||||||||||||
| 23055 | A23055G|(surface_glycoprotein:CAA1492-1494TGT(Q498C)) | 8565 | 0.991 | 151 | 0.046 | 19 | 0.002 | 3 | 1.039 | 0 | 1.039 | ||||||||||||||||||
| 23056 | A23056T|(surface_glycoprotein:CAA1492-1494TGT(Q498C)) | 8565 | 0.991 | 151 | 0.046 | 19 | 0.002 | 3 | 1.039 | 0 | 1.039 | ||||||||||||||||||
| 23076 | A23076G|(surface_glycoprotein:A1514G(Y505C)) | 8510 | 0.985 | 714 | 0.216 | 19 | 0.002 | 3 | 1.203 | 0 | 1.203 | ||||||||||||||||||
| 23084 | T23084C|(surface_glycoprotein:TAC1522-1524CAT(Y508H)) | 8614 | 0.997 | 715 | 0.216 | 19 | 0.002 | 3 | 1.215 | 0 | 1.215 | ||||||||||||||||||
| 23086 | RATG13 | C23086T|(surface_glycoprotein:TAC1522-1524CAT(Y508H)) | 8614 | 0.997 | 715 | 0.216 | 19 | 0.002 | 3 | 1.215 | 0 | 1.215 | |||||||||||||||||
| 23185 | C23185T|(surface_glycoprotein:C1623T(F541F)) | 26302 | 0.656 | 4 | 0.000 | 8 | 0.000 | 5 | 0.000 | 4 | 0.000 | 3 | 0.000 | 6 | 0.656 | 0.0 | 0.656 | ||||||||||||
| linked | 23222 | G23222A|(surface_glycoprotein:G1660A(E554K)) | 38929 | 0.959 | 8 | 1.000 | 225218 | 0.992 | 434619 | 0.993 | 5 | 0.833 | 2 | 1.000 | 235571 | 0.995 | 1 | 1.000 | 159218 | 0.995 | 21662 | 0.752 | 165321 | 0.997 | 11 | 3.7 | 6.816 | 10.516 | |
| linked | 23271 | C23271T|(surface_glycoprotein:C1709T(A570V)) | 40404 | 0.837 | 61154 | 0.995 | 247716 | 0.990 | 444990 | 0.990 | 12 | 0.923 | 2 | 1.000 | 239710 | 0.992 | 254305 | 0.997 | 206197 | 0.995 | 32195 | 0.406 | 173638 | 0.963 | 11 | 3.1960000000000000 | 6.892 | 10.088000000000000 | |
| linked | 23277 | C23277T|(surface_glycoprotein:C1715T(T572I)) | 7712 | 0.160 | 10 | 0.000 | 247527 | 0.989 | 444217 | 0.989 | 11 | 0.846 | 2 | 1.000 | 239448 | 0.990 | 254581 | 0.997 | 205899 | 0.993 | 78774 | 0.993 | 155933 | 0.864 | 11 | 3.0060000000000000 | 5.815 | 8.821000000000000 | |
| 23280 | C23280T|(surface_glycoprotein:C1718T(T573I)) | 2747 | 0.057 | 9 | 0.000 | 15 | 0.000 | 3 | 0.000 | 4 | 0.000 | 7 | 0.000 | 46710 | 0.589 | 5359 | 0.030 | 8 | 0.676 | 0.0 | 0.676 | ||||||||
| 23336 | T23336G|(surface_glycoprotein:T1774G(F592V)) | 7737 | 0.160 | 881 | 0.014 | 230 | 0.001 | 50 | 0.000 | 35 | 0.000 | 2387 | 0.009 | 436 | 0.002 | 46582 | 0.593 | 5463 | 0.031 | 9 | 0.785 | 0.025 | 0.81 | ||||||
| linkedubiq | 23403 | Delta | A23403G|(surface_glycoprotein:A1841G(D614G)) | 47856 | 0.998 | 60982 | 0.991 | 243219 | 0.996 | 436468 | 0.996 | 7 | 1.000 | 2 | 1.000 | 236365 | 0.998 | 253868 | 0.995 | 203676 | 0.998 | 78525 | 0.996 | 176958 | 0.998 | 11 | 3.9880000000000000 | 6.978000000000000 | 10.966000000000000 |
| linked | 23423 | C23423T|(surface_glycoprotein:C1861T(P621S)) | 40013 | 0.834 | 111590 | 0.996 | 256737 | 0.998 | 437223 | 0.998 | 8 | 1.000 | 2 | 1.000 | 236584 | 0.999 | 469191 | 0.996 | 241581 | 0.998 | 36715 | 0.332 | 176305 | 0.947 | 11 | 3.111 | 6.987000000000000 | 10.098000000000000 | |
| 23427 | T23427A|(surface_glycoprotein:GTT1864-1866GAC(V622D)) | 7825 | 0.163 | 5 | 0.000 | 73261 | 0.662 | 9690 | 0.052 | 4 | 0.8770000000000000 | 0.0 | 0.8770000000000000 | ||||||||||||||||
| 23428 | T23428C|(surface_glycoprotein:GTT1864-1866GAC(V622D)) | 7825 | 0.163 | 5 | 0.000 | 73261 | 0.662 | 9690 | 0.052 | 4 | 0.8770000000000000 | 0.0 | 0.8770000000000000 | ||||||||||||||||
| 23429 | G23429A|(surface_glycoprotein:G1867A(A623T)) | 7844 | 0.164 | 11 | 0.000 | 19 | 0.000 | 20 | 0.000 | 14 | 0.000 | 11 | 0.000 | 9 | 0.000 | 73391 | 0.663 | 9691 | 0.052 | 9 | 0.8790000000000000 | 0.0 | 0.8790000000000000 | ||||||
| 23487 | T23487G|(surface_glycoprotein:T1925G(V642G)) | 6346 | 0.805 | 14 | 0.000 | 6 | 0.000 | 37 | 0.000 | 9 | 0.000 | 39560 | 0.785 | 5422 | 0.475 | 7 | 2.065 | 0.0 | 2.065 | ||||||||||
| linkedubiq | 23525 | C23525T|(surface_glycoprotein:C1963T(H655Y)) | 7772 | 0.998 | 61360 | 0.998 | 17305 | 0.998 | 2 | 1.000 | 255787 | 0.999 | 44473 | 0.998 | 50002 | 0.992 | 11385 | 0.997 | 8 | 3.9850000000000000 | 3.995 | 7.98 | |||||||
| 23534 | A23534G|(surface_glycoprotein:A1972G(N658D)) | 7 | 0.000 | 2 | 0.000 | 20 | 0.000 | 1 | 0.000 | 25615 | 0.508 | 5 | 0.508 | 0.0 | 0.508 | ||||||||||||||
| 23592 | A23592T|(surface_glycoprotein:A2030T(Q677L)) | 6139 | 0.810 | 36 | 0.001 | 23 | 0.001 | 109 | 0.000 | 21 | 0.000 | 37818 | 0.793 | 5244 | 0.473 | 7 | 2.077 | 0.001 | 2.078 | ||||||||||
| linked | 23690 | A23690C|(surface_glycoprotein:A2128C(N710H)) | 16663 | 0.450 | 1 | 0.200 | 151897 | 0.724 | 43 | 0.000 | 60 | 0.000 | 101949 | 0.824 | 25 | 0.000 | 7 | 1.998 | 0.2 | 2.198 | |||||||||
| 23781 | T23781G|(surface_glycoprotein:T2219G(M740R)) | 11 | 0.000 | 78 | 0.000 | 92 | 0.000 | 343 | 0.001 | 102653 | 0.818 | 67 | 0.001 | 6 | 0.819 | 0.001 | 0.82 | ||||||||||||
| linked | 23843 | A23843G|(surface_glycoprotein:A2281G(T761A)) | 16452 | 0.448 | 1 | 0.200 | 150295 | 0.719 | 38 | 0.000 | 66 | 0.000 | 100682 | 0.821 | 12 | 0.000 | 7 | 1.988 | 0.2 | 2.188 | |||||||||
| 23945 | A23945G|(surface_glycoprotein:A2383G(K795E)) | 20525 | 0.385 | 22 | 0.000 | 44 | 0.000 | 57812 | 0.724 | 4 | 1.109 | 0.0 | 1.109 | ||||||||||||||||
| 24044 | C24044G|(surface_glycoprotein:C2482G(L828V)) | 30589 | 0.563 | 109 | 0.001 | 122 | 0.001 | 58120 | 0.713 | 4 | 1.277 | 0.001 | 1.2780000000000000 | ||||||||||||||||
| 24079 | T24079G|(surface_glycoprotein:T2517G(D839E)) | 30702 | 0.565 | 289 | 0.004 | 1084 | 0.005 | 58375 | 0.722 | 4 | 1.291 | 0.005 | 1.2960000000000000 | ||||||||||||||||
| 24090 | A24090G|(surface_glycoprotein:A2528G(D843G)) | 30284 | 0.562 | 3 | 0.000 | 16 | 0.000 | 58239 | 0.720 | 4 | 1.282 | 0.0 | 1.282 | ||||||||||||||||
| 24111 | T24111C|(surface_glycoprotein:T2549C(I850T)) | 30167 | 0.564 | 20 | 0.000 | 79 | 0.000 | 58120 | 0.718 | 4 | 1.282 | 0.0 | 1.282 | ||||||||||||||||
| 24433 | A24433C|(surface_glycoprotein:A2871C(Q957H)) | 615 | 0.476 | 2 | 0.002 | 2474 | 0.518 | 13 | 0.002 | 3 | 0.001 | 1573 | 0.719 | 5 | 0.002 | 7 | 1.7150000000000000 | 0.005 | 1.7200000000000000 | ||||||||||
| 24436 | T24436G|(surface_glycoprotein:T2874G(A958A)) | 612 | 0.473 | 2470 | 0.517 | 1572 | 0.718 | 3 | 1.7080000000000000 | 0 | 1.7080000000000000 | ||||||||||||||||||
| 24703 | T24703C|(surface_glycoprotein:T3141C(Y1047Y)) | 5 | 0.000 | 4 | 0.000 | 23 | 0.000 | 39 | 0.000 | 16 | 0.000 | 25003 | 0.454 | 6 | 0.454 | 0.0 | 0.454 | ||||||||||||
| 24712 | G24712A|(surface_glycoprotein:G3150A(M1050I)) | 22345 | 0.703 | 4 | 0.000 | 7 | 0.000 | 17 | 0.000 | 54246 | 0.547 | 12 | 0.000 | 6 | 1.25 | 0.0 | 1.25 | ||||||||||||
| 24796 | T24796A|(surface_glycoprotein:T3234A(A1078A)) | 750 | 0.001 | 143135 | 0.703 | 1424 | 0.001 | 181 | 0.001 | 249 | 0.001 | 47 | 0.000 | 143 | 0.001 | 26 | 0.000 | 21 | 0.000 | 9 | 0.703 | 0.005 | 0.708 | ||||||
| 24812 | G24812A|(surface_glycoprotein:G3250A(D1084N)) | 24 | 0.000 | 5 | 0.000 | 8 | 0.000 | 16 | 0.000 | 7 | 0.000 | 17023 | 0.717 | 1 | 0.000 | 7 | 0.717 | 0.0 | 0.717 | ||||||||||
| 24872 | G24872T|(surface_glycoprotein:G3310T(V1104L)) | 3703 | 0.495 | 569 | 0.001 | 83 | 0.001 | 1597 | 0.001 | 224 | 0.001 | 278 | 0.001 | 131 | 0.000 | 6 | 0.000 | 10 | 0.000 | 9 | 0.496 | 0.004 | 0.5 | ||||||
| 24964 | C24964T|(surface_glycoprotein:C3402T(N1134N)) | 36 | 0.000 | 7 | 0.000 | 68 | 0.000 | 5 | 0.000 | 15 | 0.000 | 12 | 0.000 | 24568 | 0.994 | 1 | 0.000 | 8 | 0.994 | 0.0 | 0.994 | ||||||||
| 24966 | A24966T|(surface_glycoprotein:A3404T(N1135I)) | 3806 | 0.500 | 566 | 0.001 | 74 | 0.001 | 1708 | 0.001 | 213 | 0.001 | 263 | 0.001 | 122 | 0.000 | 24558 | 0.993 | 19 | 0.000 | 9 | 1.494 | 0.004 | 1.498 | ||||||
| linked | 24990 | C24990T|(surface_glycoprotein:C3428T(P1143L)) | 3751 | 0.493 | 799846 | 0.991 | 98550 | 0.991 | 1 | 1.000 | 1303619 | 0.988 | 161102 | 0.988 | 474325 | 0.993 | 1 | 1.000 | 284283 | 0.995 | 1 | 0.000 | 40082 | 0.994 | 11 | 2.4780000000000000 | 6.955 | 9.433 | |
| 25000 | C25000A|(surface_glycoprotein:C3438A(D1146E)) | 3818 | 0.502 | 151 | 0.000 | 13 | 0.000 | 272 | 0.000 | 34 | 0.000 | 81 | 0.000 | 49 | 0.000 | 5 | 0.000 | 5 | 0.000 | 9 | 0.502 | 0.0 | 0.502 | ||||||
| linked | 25000 | RATG13 | C25000T|(surface_glycoprotein:C3438T(D1146D)) | 3766 | 0.495 | 797417 | 0.988 | 98205 | 0.988 | 1 | 1.000 | 1302226 | 0.987 | 160768 | 0.986 | 473659 | 0.991 | 1 | 1.000 | 283951 | 0.994 | 2 | 0.000 | 39928 | 0.990 | 11 | 2.473 | 6.946 | 9.419 |
| 25020 | A25020C|(surface_glycoprotein:A3458C(D1153A)) | 3755 | 0.499 | 283 | 0.000 | 40 | 0.000 | 1080 | 0.001 | 137 | 0.001 | 116 | 0.000 | 83 | 0.000 | 6732 | 0.278 | 17 | 0.000 | 9 | 0.777 | 0.002 | 0.779 | ||||||
| 25067 | A25067T|(surface_glycoprotein:A3505T(I1169F)) | 583 | 0.001 | 82 | 0.001 | 1420 | 0.001 | 167 | 0.001 | 198 | 0.000 | 96 | 0.000 | 24152 | 0.997 | 25 | 0.001 | 8 | 0.999 | 0.003 | 1.002 | ||||||||
| 25168 | A25168C|(surface_glycoprotein:A3606C(E1202D)) | 1 | 0.000 | 7 | 0.000 | 6 | 0.001 | 1 | 0.333 | 4 | 0.334 | 0.0 | 0.334 | ||||||||||||||||
| 25169 | C25169T|(surface_glycoprotein:C3607T(L1203F)) | 3302 | 0.797 | 5393 | 0.611 | 2 | 1.408 | 0 | 1.408 | ||||||||||||||||||||
| linked | 25207 | C25207T|(surface_glycoprotein:C3645T(Y1215Y)) | 849 | 0.199 | 3629 | 0.986 | 1 | 1.000 | 51296 | 0.992 | 3368 | 0.381 | 3 | 1.000 | 6 | 2.566 | 1.992 | 4.558 | |||||||||||
| 25216 | A25216G|(surface_glycoprotein:A3654G(L1218L)) | 3390 | 0.795 | 1 | 0.000 | 7 | 0.000 | 5388 | 0.610 | 4 | 1.405 | 0.0 | 1.405 | ||||||||||||||||
| 25223 | A25223G|(surface_glycoprotein:A3661G(I1221V)) | 5 | 0.001 | 1 | 0.000 | 7 | 0.000 | 3 | 1.000 | 4 | 1.001 | 0.0 | 1.001 | ||||||||||||||||
| 25254 | C25254T|(surface_glycoprotein:C3692T(T1231I)) | 3392 | 0.795 | 3 | 0.001 | 7 | 0.000 | 5690 | 0.607 | 4 | 1.403 | 0.0 | 1.403 | ||||||||||||||||
| 25273 | G25273T|(surface_glycoprotein:G3711T(M1237I)) | 1 | 0.000 | 17 | 0.004 | 136 | 0.002 | 27 | 0.003 | 1 | 0.333 | 5 | 0.34 | 0.002 | 0.342 | ||||||||||||||
| 25276 | C25276T|(surface_glycoprotein:C3714T(T1238T)) | 3379 | 0.792 | 1 | 0.000 | 9 | 0.000 | 5382 | 0.608 | 4 | 1.4 | 0.0 | 1.4 | ||||||||||||||||
| 25305 | G25305T|(surface_glycoprotein:G3743T(C1248F)) | 101 | 0.027 | 554 | 0.011 | 107 | 0.012 | 1 | 0.333 | 4 | 0.37200000000000000 | 0.011 | 0.38300000000000000 | ||||||||||||||||
| 25310 | T25310A|(surface_glycoprotein:T3748A(C1250S)) | 3 | 0.001 | 3 | 0.000 | 1 | 0.000 | 1 | 0.333 | 4 | 0.334 | 0.0 | 0.334 | ||||||||||||||||
| 25352 | G25352T|(surface_glycoprotein:G3790T(V1264L)) | 3328 | 0.798 | 3 | 0.001 | 40 | 0.001 | 1969 | 0.223 | 4 | 1.022 | 0.001 | 1.023 | ||||||||||||||||
| 25360 | A25360C|(surface_glycoprotein:A3798C(K1266N)) | 3323 | 0.797 | 4 | 0.001 | 25 | 0.000 | 5426 | 0.614 | 4 | 1.412 | 0.0 | 1.412 | ||||||||||||||||
| 25392 | T25392G | 3328 | 0.794 | 1 | 0.015 | 2 | 0.001 | 1 | 0.010 | 33 | 0.001 | 5432 | 0.616 | 1 | 0.014 | 7 | 1.425 | 0.026000000000000000 | 1.451 | ||||||||||
| 25420 | A25420T|(ORF3a_protein:A28T(I10F)) | 4224 | 0.083 | 33 | 0.000 | 8 | 0.000 | 28 | 0.000 | 29 | 0.000 | 6 | 0.000 | 13 | 0.000 | 8 | 0.000 | 29213 | 0.704 | 17 | 0.000 | 10 | 0.7870000000000000 | 0.0 | 0.7870000000000000 | ||||
| 25546 | RATG13 | C25546T|(ORF3a_protein:C154T(L52F)) | 4275 | 0.085 | 8 | 0.000 | 6 | 0.000 | 4 | 0.000 | 6 | 0.000 | 5 | 0.000 | 24002 | 0.725 | 8 | 0.000 | 8 | 0.8100000000000000 | 0.0 | 0.8100000000000000 | |||||||
| 25563 | G25563T|(ORF3a_protein:G171T(Q57H)) | 4261 | 0.085 | 430 | 0.001 | 217 | 0.001 | 371 | 0.001 | 587 | 0.002 | 275 | 0.001 | 137 | 0.001 | 24482 | 0.727 | 62 | 0.000 | 9 | 0.813 | 0.006 | 0.819 | ||||||
| 25613 | C25613T|(ORF3a_protein:C221T(S74F)) | 4245 | 0.084 | 21 | 0.000 | 12 | 0.000 | 14 | 0.000 | 22 | 0.000 | 15 | 0.000 | 7 | 0.000 | 24105 | 0.730 | 22698 | 0.144 | 9 | 0.958 | 0.0 | 0.958 | ||||||
| 25688 | C25688T|(ORF3a_protein:C296T(A99V)) | 20 | 0.000 | 6 | 0.000 | 7 | 0.000 | 6 | 0.000 | 31 | 0.000 | 7 | 0.000 | 14 | 0.000 | 23740 | 0.656 | 4 | 0.000 | 9 | 0.656 | 0.0 | 0.656 | ||||||
| 25703 | C25703T|(ORF3a_protein:C311T(P104L)) | 4378 | 0.084 | 24 | 0.000 | 1050 | 0.006 | 24 | 0.000 | 15 | 0.000 | 9 | 0.000 | 9 | 0.000 | 24126 | 0.670 | 7 | 0.000 | 9 | 0.76 | 0.0 | 0.76 | ||||||
| 25855 | G25855T|(ORF3a_protein:G463T(D155Y)) | 2 | 0.001 | 53 | 0.004 | 61 | 0.003 | 1303 | 0.351 | 4 | 0.356 | 0.003 | 0.359 | ||||||||||||||||
| 25907 | G25907T|(ORF3a_protein:G515T(G172V)) | 213 | 0.096 | 1078 | 0.094 | 19 | 0.001 | 424 | 0.118 | 4 | 0.308 | 0.001 | 0.309 | ||||||||||||||||
| 26056 | G26056A|(ORF3a_protein:G664A(D222N)) | 9204 | 0.651 | 7 | 0.000 | 4 | 0.000 | 3 | 0.000 | 1 | 0.000 | 40606 | 0.956 | 1 | 0.000 | 7 | 1.607 | 0.0 | 1.607 | ||||||||||
| 26149 | T26149C|(ORF3a_protein:T757C(S253P)) | 4369 | 0.306 | 1 | 0.000 | 18 | 0.000 | 3 | 0.000 | 13 | 0.000 | 2 | 0.000 | 40560 | 0.952 | 10 | 0.000 | 8 | 1.258 | 0.0 | 1.258 | ||||||||
| 26149 | T26149C|(ORF3a_protein:TCC757-759CCT(S253P)) | 4930 | 0.345 | 4 | 0.000 | 2 | 0.345 | 0 | 0.345 | ||||||||||||||||||||
| 26151 | C26151T|(ORF3a_protein:TCC757-759CCT(S253P)) | 4930 | 0.345 | 4 | 0.000 | 2 | 0.345 | 0 | 0.345 | ||||||||||||||||||||
| 26379 | T26379C|(envelope_protein:T135C(N45N)) | 53533 | 0.465 | 191 | 0.017 | 15 | 0.000 | 1 | 0.000 | 3 | 0.000 | 12 | 0.000 | 8 | 0.000 | 1 | 0.000 | 188035 | 0.747 | 332 | 0.003 | 10 | 1.232 | 0.0 | 1.232 | ||||
| 26417 | T26417G|(envelope_protein:T173G(V58G)) | 4 | 0.000 | 1 | 0.333 | 187 | 0.002 | 20 | 0.002 | 141 | 0.001 | 74 | 0.000 | 82 | 0.002 | 7 | 0.335 | 0.005 | 0.34 | ||||||||||
| 26440 | A26440T|(envelope_protein:A196T(N66Y)) | 88936 | 0.869 | 9 | 0.000 | 3 | 0.000 | 18 | 0.000 | 200713 | 0.989 | 18 | 0.000 | 6 | 1.858 | 0.0 | 1.858 | ||||||||||||
| 26443 | T26443C|(envelope_protein:T199C(S67P)) | 54929 | 0.537 | 4 | 0.000 | 14 | 0.000 | 179789 | 0.886 | 10 | 0.000 | 5 | 1.423 | 0.0 | 1.423 | ||||||||||||||
| 26457 | T26457A|(envelope_protein:T213A(P71P)) | 54997 | 0.538 | 53 | 0.001 | 5 | 0.001 | 75 | 0.001 | 179938 | 0.887 | 20 | 0.000 | 6 | 1.425 | 0.003 | 1.428 | ||||||||||||
| 26475 | G26475A | 55043 | 0.538 | 5 | 0.000 | 9 | 0.000 | 180500 | 0.890 | 11 | 0.000 | 5 | 1.428 | 0.0 | 1.428 | ||||||||||||||
| 26520 | G26520A | 27342 | 0.264 | 3 | 0.000 | 1 | 0.000 | 11 | 0.000 | 180212 | 0.889 | 4 | 0.000 | 6 | 1.153 | 0.0 | 1.153 | ||||||||||||
| 26527 | C26527T|(membrane_glycoprotein:C5T(A2V)) | 92217 | 0.892 | 10 | 0.000 | 2 | 0.000 | 4 | 0.000 | 199699 | 0.985 | 3 | 0.000 | 6 | 1.877 | 0.0 | 1.877 | ||||||||||||
| linked | 26529 | G26529C|(membrane_glycoprotein:G7C(D3H)) | 10574 | 0.102 | 3 | 1.000 | 85411 | 0.985 | 8509 | 0.985 | 3 | 1.000 | 76 | 0.962 | 144121 | 0.991 | 1635 | 0.008 | 42339 | 0.990 | 9 | 2.1 | 4.923000000000000 | 7.023 | |||||
| 26531 | T26531G|(membrane_glycoprotein:T9G(D3E)) | 92363 | 0.893 | 1 | 0.000 | 3 | 0.000 | 200342 | 0.988 | 4 | 0.000 | 5 | 1.881 | 0.0 | 1.881 | ||||||||||||||
| 26552 | T26552G|(membrane_glycoprotein:T30G(V10V)) | 71 | 0.001 | 257 | 0.003 | 43 | 0.005 | 1 | 0.011 | 377 | 0.002 | 177254 | 0.852 | 139 | 0.003 | 7 | 0.856 | 0.021000000000000000 | 0.877 | ||||||||||
| linked | 26577 | C26577G|(membrane_glycoprotein:C55G(Q19E)) | 30705 | 0.297 | 3 | 1.000 | 85564 | 0.987 | 8471 | 0.983 | 2 | 1.000 | 80 | 0.941 | 144238 | 0.991 | 180613 | 0.891 | 42027 | 0.991 | 9 | 3.1790000000000000 | 4.902000000000000 | 8.081 | |||||
| 26585 | RATG13 | C26585T|(membrane_glycoprotein:C63T(N21N)) | 35829 | 0.347 | 2 | 0.000 | 2 | 0.000 | 3 | 0.000 | 2503 | 0.012 | 2 | 0.000 | 6 | 0.359 | 0.0 | 0.359 | |||||||||||
| 26586 | C26586T|(membrane_glycoprotein:C64T(L22L)) | 34334 | 0.332 | 2 | 0.000 | 1 | 0.000 | 1 | 0.000 | 5 | 0.000 | 5 | 0.332 | 0.0 | 0.332 | ||||||||||||||
| 26607 | C26607T|(membrane_glycoprotein:C85T(L29F)) | 92275 | 0.894 | 2 | 0.000 | 4 | 0.000 | 200379 | 0.989 | 2 | 0.000 | 5 | 1.883 | 0.0 | 1.883 | ||||||||||||||
| 26673 | T26673C|(membrane_glycoprotein:T151C(L51L)) | 40476 | 0.339 | 1752 | 0.027 | 11 | 0.000 | 2 | 0.000 | 10 | 0.000 | 10 | 0.000 | 2 | 0.000 | 217039 | 0.889 | 1685 | 0.010 | 9 | 1.2650000000000000 | 0.0 | 1.2650000000000000 | ||||||
| linked | 26681 | C26681T|(membrane_glycoprotein:C159T(F53F)) | 23194 | 0.194 | 62630 | 0.969 | 110306 | 0.997 | 8784 | 0.998 | 40035 | 0.994 | 171691 | 0.998 | 145348 | 0.999 | 17313 | 0.997 | 16398 | 0.067 | 169981 | 0.987 | 10 | 2.217 | 5.983 | 8.2 | |||
| 26688 | C26688T|(membrane_glycoprotein:C166T(L56L)) | 117 | 0.001 | 3 | 0.000 | 3 | 0.000 | 2 | 0.000 | 5 | 0.000 | 108176 | 0.443 | 1659 | 0.010 | 7 | 0.454 | 0.0 | 0.454 | ||||||||||
| linked | 26709 | G26709A|(membrane_glycoprotein:G187A(A63T)) | 23322 | 0.195 | 62009 | 0.959 | 110026 | 0.995 | 8772 | 0.996 | 39420 | 0.979 | 170517 | 0.991 | 145285 | 0.998 | 17254 | 0.993 | 1544 | 0.006 | 169445 | 0.983 | 10 | 2.143 | 5.952000000000000 | 8.095 | |||
| 26714 | RATG13 | T26714C|(membrane_glycoprotein:T192C(C64C)) | 19 | 0.000 | 1166 | 0.018 | 13 | 0.000 | 3 | 0.000 | 8 | 0.000 | 16 | 0.000 | 2 | 0.000 | 112089 | 0.458 | 1696 | 0.010 | 9 | 0.48600000000000000 | 0.0 | 0.48600000000000000 | |||||
| 26753 | RATG13 | C26753T|(membrane_glycoprotein:C231T(T77T)) | 149 | 0.008 | 1741 | 0.027 | 1 | 0.000 | 2 | 0.000 | 3 | 0.000 | 2 | 0.000 | 12185 | 0.289 | 4 | 0.000 | 8 | 0.324 | 0.0 | 0.324 | |||||||
| 26767 | Delta | T26767C|(membrane_glycoprotein:T245C(I82T)) | 5305 | 0.285 | 1744 | 0.027 | 3 | 0.000 | 1 | 0.000 | 14 | 0.000 | 42028 | 0.997 | 1666 | 0.013 | 7 | 1.3220000000000000 | 0.0 | 1.3220000000000000 | |||||||||
| 26792 | G26792A|(membrane_glycoprotein:G270A(L90L)) | 713 | 0.038 | 596 | 0.009 | 3 | 0.000 | 3 | 0.000 | 7 | 0.000 | 1 | 0.000 | 14898 | 0.339 | 1695 | 0.013 | 8 | 0.399 | 0.0 | 0.399 | ||||||||
| 26824 | G26824A|(membrane_glycoprotein:G302A(R101K)) | 595 | 0.032 | 1725 | 0.027 | 1 | 0.000 | 7 | 0.000 | 30164 | 0.700 | 7 | 0.000 | 6 | 0.759 | 0.0 | 0.759 | ||||||||||||
| linked | 26833 | C26833T|(membrane_glycoprotein:C311T(A104V)) | 13315 | 0.714 | 62689 | 0.970 | 23906 | 0.997 | 189 | 0.995 | 40019 | 0.996 | 171741 | 0.997 | 17329 | 0.998 | 5 | 0.000 | 116977 | 0.893 | 9 | 2.577 | 4.983 | 7.56 | |||||
| 26847 | A26847T|(membrane_glycoprotein:A325T(M109L)) | 665 | 0.010 | 25 | 0.001 | 66 | 0.002 | 131 | 0.001 | 10 | 0.001 | 22682 | 0.526 | 78 | 0.001 | 7 | 0.537 | 0.005 | 0.542 | ||||||||||
| 26853 | T26853G|(membrane_glycoprotein:T331G(S111A)) | 2553 | 0.137 | 1169 | 0.018 | 1 | 0.000 | 6 | 0.000 | 18 | 0.000 | 1 | 0.000 | 24171 | 0.561 | 1602 | 0.012 | 8 | 0.7280000000000000 | 0.0 | 0.7280000000000000 | ||||||||
| linked | 26858 | C26858T|(membrane_glycoprotein:C336T(F112F)) | 13288 | 0.713 | 62758 | 0.971 | 23913 | 0.998 | 190 | 1.000 | 40038 | 0.996 | 171797 | 0.997 | 17342 | 0.999 | 128849 | 0.984 | 8 | 2.668 | 4.990000000000000 | 7.6580000000000000 | |||||||
| 26895 | C26895T|(membrane_glycoprotein:C373T(H125Y)) | 844 | 0.046 | 64199 | 0.993 | 1 | 0.000 | 2 | 0.000 | 5 | 0.000 | 36561 | 0.849 | 1585 | 0.012 | 7 | 1.9000000000000000 | 0.0 | 1.9000000000000000 | ||||||||||
| 26905 | T26905C|(membrane_glycoprotein:T383C(I128T)) | 1172 | 0.018 | 1 | 0.000 | 2 | 0.000 | 21 | 0.000 | 2 | 0.000 | 36676 | 0.852 | 1590 | 0.012 | 7 | 0.882 | 0.0 | 0.882 | ||||||||||
| 26921 | T26921C|(membrane_glycoprotein:T399C(L133L)) | 2401 | 0.130 | 1174 | 0.018 | 3 | 0.000 | 4 | 0.000 | 25 | 0.000 | 2 | 0.000 | 25991 | 0.604 | 1597 | 0.012 | 8 | 0.764 | 0.0 | 0.764 | ||||||||
| 26927 | RATG13 | A26927G|(membrane_glycoprotein:A405G(E135E)) | 1681 | 0.091 | 1170 | 0.018 | 6 | 0.000 | 4 | 0.000 | 23 | 0.000 | 1 | 0.000 | 15150 | 0.352 | 1607 | 0.012 | 8 | 0.473 | 0.0 | 0.473 | |||||||
| 26934 | C26934A|(membrane_glycoprotein:C412A(L138I)) | 2514 | 0.136 | 1768 | 0.027 | 11 | 0.000 | 30 | 0.001 | 63 | 0.000 | 4 | 0.000 | 36692 | 0.852 | 1624 | 0.012 | 8 | 1.0270000000000000 | 0.001 | 1.028 | ||||||||
| 26969 | T26969C|(membrane_glycoprotein:T447C(L149L)) | 2 | 0.000 | 1178 | 0.018 | 5 | 0.000 | 8 | 0.000 | 29 | 0.000 | 1 | 0.000 | 23357 | 0.551 | 1660 | 0.013 | 8 | 0.5820000000000000 | 0.0 | 0.5820000000000000 | ||||||||
| 26972 | T26972C|(membrane_glycoprotein:T450C(R150R)) | 2 | 0.000 | 62267 | 0.969 | 2 | 0.000 | 2 | 0.000 | 7 | 0.000 | 2 | 0.000 | 3 | 0.000 | 12 | 0.000 | 8 | 0.969 | 0.0 | 0.969 | ||||||||
| 27005 | C27005T|(membrane_glycoprotein:C483T(I161I)) | 72544 | 0.637 | 21027 | 0.259 | 6 | 0.000 | 7 | 0.000 | 6 | 0.000 | 324124 | 0.950 | 15567 | 0.315 | 7 | 2.161 | 0.0 | 2.161 | ||||||||||
| linked | 27008 | G27008T|(membrane_glycoprotein:G486T(K162N)) | 72525 | 0.637 | 21149 | 0.260 | 247 | 0.003 | 1 | 0.333 | 371 | 0.004 | 103 | 0.001 | 325059 | 0.953 | 15600 | 0.315 | 8 | 2.165 | 0.341 | 2.5060000000000000 | |||||||
| 27056 | T27056C|(membrane_glycoprotein:T534C(Y178Y)) | 72584 | 0.636 | 21027 | 0.259 | 6 | 0.000 | 10 | 0.000 | 7 | 0.000 | 316731 | 0.928 | 15675 | 0.314 | 7 | 2.137 | 0.0 | 2.137 | ||||||||||
| 27061 | A27061G|(membrane_glycoprotein:A539G(K180R)) | 31 | 0.000 | 21033 | 0.259 | 14 | 0.000 | 31 | 0.000 | 12 | 0.000 | 76994 | 0.226 | 15654 | 0.314 | 7 | 0.799 | 0.0 | 0.799 | ||||||||||
| 27112 | G27112C|(membrane_glycoprotein:G590C(S197T)) | 73482 | 0.638 | 21020 | 0.259 | 26 | 0.000 | 36 | 0.000 | 8 | 0.000 | 324613 | 0.951 | 15660 | 0.314 | 7 | 2.162 | 0.0 | 2.162 | ||||||||||
| 27143 | C27143T|(membrane_glycoprotein:C621T(N207N)) | 15 | 0.000 | 2 | 0.000 | 7 | 0.000 | 5 | 0.000 | 3 | 0.000 | 120192 | 0.351 | 2 | 0.000 | 7 | 0.351 | 0.0 | 0.351 | ||||||||||
| 27147 | G27147A|(membrane_glycoprotein:G625A(D209N)) | 73499 | 0.637 | 20855 | 0.257 | 51 | 0.001 | 74 | 0.001 | 25 | 0.000 | 324151 | 0.946 | 15726 | 0.314 | 7 | 2.154 | 0.002 | 2.1560000000000000 | ||||||||||
| 27192 | GTGACAACAGATGTTTCATCTCGTTGACTTTCAGGTT27192-27228del|(ORF6_protein:Start_disrupted) | 2 | 0.000 | 84594 | 0.254 | 15422 | 0.312 | 3 | 0.5660000000000000 | 0 | 0.5660000000000000 | ||||||||||||||||||
| 27230 | C27230-27230del|(ORF6_protein:29-29del(10fs)) | 2 | 0.000 | 1 | 0.000 | 84645 | 0.233 | 15421 | 0.153 | 4 | 0.386 | 0.0 | 0.386 | ||||||||||||||||
| 27230 | C27230A|(ORF6_protein:C29A(T10N)) | 72086 | 0.637 | 21380 | 0.204 | 663 | 0.002 | 1 | 0.000 | 868 | 0.003 | 338 | 0.002 | 226299 | 0.623 | 78 | 0.001 | 8 | 1.4650000000000000 | 0.007 | 1.4720000000000000 | ||||||||
| 27233 | T27233C|(ORF6_protein:T32C(I11T)) | 72049 | 0.509 | 20895 | 0.199 | 41 | 0.000 | 5 | 0.000 | 39 | 0.000 | 27 | 0.000 | 17 | 0.000 | 312989 | 0.860 | 15456 | 0.152 | 9 | 1.7200000000000000 | 0.0 | 1.7200000000000000 | ||||||
| 27242 | T27242C|(ORF6_protein:T41C(I14T)) | 115824 | 0.624 | 20929 | 0.199 | 34 | 0.000 | 8 | 0.000 | 41 | 0.000 | 28 | 0.000 | 11 | 0.000 | 552988 | 0.921 | 15507 | 0.152 | 9 | 1.896 | 0.0 | 1.896 | ||||||
| 27262 | A27262G|(ORF6_protein:A61G(T21A)) | 115463 | 0.622 | 20773 | 0.197 | 23 | 0.000 | 16 | 0.000 | 32 | 0.000 | 42 | 0.000 | 18 | 0.000 | 427561 | 0.712 | 10 | 0.000 | 9 | 1.5310000000000000 | 0.0 | 1.5310000000000000 | ||||||
| 27267 | RATG13 | T27267C|(ORF6_protein:T66C(F22F)) | 70 | 0.000 | 20 | 0.000 | 34 | 0.000 | 12 | 0.000 | 31 | 0.000 | 44 | 0.000 | 22 | 0.000 | 194067 | 0.323 | 15506 | 0.152 | 9 | 0.475 | 0.0 | 0.475 | |||||
| 27285 | RATG13 | T27285C|(ORF6_protein:T84C(N28N)) | 6166 | 0.033 | 8 | 0.000 | 25 | 0.000 | 4 | 0.000 | 26 | 0.000 | 39 | 0.000 | 6 | 0.000 | 431046 | 0.718 | 15511 | 0.152 | 9 | 0.903 | 0.0 | 0.903 | |||||
| 27290 | A27290G|(ORF6_protein:A89G(D30G)) | 112593 | 0.607 | 21023 | 0.200 | 31 | 0.000 | 23 | 0.000 | 41 | 0.000 | 58 | 0.000 | 17 | 0.000 | 551408 | 0.918 | 15523 | 0.152 | 9 | 1.877 | 0.0 | 1.877 | ||||||
| 27292 | T27292C|(ORF6_protein:T91C(Y31H)) | 108711 | 0.586 | 21015 | 0.200 | 61 | 0.000 | 16 | 0.000 | 45 | 0.000 | 55 | 0.000 | 28 | 0.000 | 366744 | 0.608 | 15539 | 0.153 | 9 | 1.5470000000000000 | 0.0 | 1.5470000000000000 | ||||||
| 27318 | T27318C|(ORF6_protein:T117C(N39N)) | 6866 | 0.037 | 20974 | 0.199 | 9 | 0.000 | 5 | 0.000 | 17 | 0.000 | 35 | 0.000 | 13 | 0.000 | 293333 | 0.486 | 15493 | 0.152 | 9 | 0.874 | 0.0 | 0.874 | ||||||
| 27340 | A27340G|(ORF6_protein:A139G(N47D)) | 80338 | 0.432 | 17038 | 0.162 | 37 | 0.000 | 19 | 0.000 | 46 | 0.000 | 73 | 0.000 | 21 | 0.000 | 359862 | 0.597 | 15456 | 0.152 | 9 | 1.343 | 0.0 | 1.343 | ||||||
| 27442 | C27442G|(ORF7a_protein:C49G(L17V)) | 20170 | 0.692 | 3 | 0.000 | 27 | 0.000 | 31 | 0.000 | 75 | 0.000 | 65 | 0.000 | 15 | 0.000 | 33536 | 0.952 | 3 | 0.000 | 9 | 1.644 | 0.0 | 1.644 | ||||||
| 27522 | T27522G|(ORF7a_protein:T129G(N43K)) | 19932 | 0.692 | 35 | 0.001 | 346 | 0.002 | 223 | 0.002 | 543 | 0.002 | 347 | 0.001 | 100 | 0.001 | 33694 | 0.957 | 60 | 0.001 | 9 | 1.6510000000000000 | 0.008 | 1.6590000000000000 | ||||||
| 27634 | T27634C|(ORF7a_protein:T241C(S81P)) | 19608 | 0.387 | 21 | 0.000 | 3 | 0.000 | 7 | 0.000 | 5 | 0.000 | 4 | 0.000 | 80478 | 0.754 | 10 | 0.000 | 8 | 1.141 | 0.0 | 1.141 | ||||||||
| 27684 | C27684T|(ORF7a_protein:C291T(Y97Y)) | 19597 | 0.384 | 11 | 0.000 | 2 | 0.000 | 3 | 0.000 | 2 | 0.000 | 1 | 0.000 | 80052 | 0.750 | 5 | 0.000 | 8 | 1.134 | 0.0 | 1.134 | ||||||||
| 27711 | A27711G|(ORF7a_protein:A318G(A106A)) | 19 | 0.000 | 127 | 0.001 | 25 | 0.000 | 75 | 0.001 | 48 | 0.001 | 24 | 0.000 | 79849 | 0.748 | 49 | 0.001 | 8 | 0.75 | 0.002 | 0.752 | ||||||||
| 27739 | C27739A|(ORF7a_protein:C346A(L116I)) | 2 | 0.000 | 666 | 0.003 | 161 | 0.003 | 365 | 0.003 | 256 | 0.003 | 89 | 0.001 | 78523 | 0.732 | 55 | 0.001 | 8 | 0.736 | 0.010000000000000000 | 0.746 | ||||||||
| 27739 | C27739T|(ORF7a_protein:C346T(L116F)) | 19623 | 0.384 | 7 | 0.000 | 2 | 0.000 | 7 | 0.000 | 3 | 0.000 | 1 | 0.000 | 57 | 0.001 | 9 | 0.000 | 8 | 0.385 | 0.0 | 0.385 | ||||||||
| 27792 | T27792-27792del|(ORF7b:37-37del(13fs)) | 18332 | 0.359 | 34 | 0.000 | 8 | 0.000 | 4 | 0.000 | 6 | 0.000 | 1818 | 0.064 | 5 | 0.000 | 7 | 0.423 | 0.0 | 0.423 | ||||||||||
| linkedubiq | 27807 | C27807T|(ORF7b:C52T(L18L)) | 30922 | 0.981 | 1 | 1.000 | 228910 | 0.994 | 57530 | 0.994 | 106550 | 0.991 | 70800 | 0.990 | 1 | 1.000 | 73635 | 0.995 | 26349 | 0.913 | 90115 | 0.994 | 10 | 3.8820000000000000 | 5.97 | 9.852 | |||
| linkedubiq | 27810 | T27810C|(ORF7b:T55C(F19L)) | 30943 | 0.982 | 1 | 1.000 | 228634 | 0.993 | 57454 | 0.993 | 106552 | 0.991 | 70819 | 0.990 | 1 | 1.000 | 73696 | 0.996 | 26323 | 0.913 | 90373 | 0.997 | 10 | 3.885 | 5.970000000000000 | 9.855 | |||
| 27900 | RATG13 | T27900C|(ORF8_protein:T7C(F3L)) | 10 | 0.000 | 23 | 0.000 | 20 | 0.000 | 13 | 0.000 | 9 | 0.000 | 11 | 0.000 | 12 | 0.000 | 14020 | 0.327 | 11 | 0.000 | 9 | 0.327 | 0.0 | 0.327 | |||||
| linked | 28271 | A28271T | 49834 | 0.720 | 6 | 0.857 | 291380 | 0.995 | 28572 | 0.996 | 1046781 | 0.994 | 215962 | 0.994 | 1 | 1.000 | 7 | 1.000 | 386086 | 0.998 | 86554 | 0.978 | 158085 | 0.997 | 11 | 3.6900000000000000 | 6.839 | 10.529 | |
| 28289 | C28289A|(nucleocapsid_phosphoprotein:C16A(P6T)) | 19274 | 0.278 | 293 | 0.001 | 21 | 0.001 | 1219 | 0.001 | 241 | 0.001 | 242 | 0.001 | 2498 | 0.028 | 35 | 0.000 | 8 | 0.30700000000000000 | 0.004 | 0.31100000000000000 | ||||||||
| 28291 | C28291A|(nucleocapsid_phosphoprotein:C18A(P6P)) | 25478 | 0.367 | 571 | 0.002 | 46 | 0.002 | 2510 | 0.002 | 518 | 0.002 | 313 | 0.001 | 76 | 0.001 | 48 | 0.000 | 8 | 0.37 | 0.007 | 0.377 | ||||||||
| linked | 28311 | C28311T|(nucleocapsid_phosphoprotein:C38T(P13L)) | 49774 | 0.717 | 7 | 1.000 | 291374 | 0.995 | 28591 | 0.996 | 1046935 | 0.994 | 216024 | 0.994 | 1 | 1.000 | 7 | 1.000 | 385800 | 0.997 | 85113 | 0.942 | 158216 | 0.998 | 11 | 3.652 | 6.981 | 10.633 | |
| 28339 | T28339C|(nucleocapsid_phosphoprotein:T66C(D22D)) | 16 | 0.000 | 86 | 0.000 | 4 | 0.000 | 373 | 0.000 | 90 | 0.000 | 70 | 0.000 | 80087 | 0.479 | 58 | 0.000 | 8 | 0.479 | 0.0 | 0.479 | ||||||||
| 28362 | G28362A|(nucleocapsid_phosphoprotein:G89A(G30E)) | 19325 | 0.278 | 79709 | 0.482 | 2 | 0.76 | 0 | 0.76 | ||||||||||||||||||||
| linked | 28362 | GAGAACGCA28362-28370del|(nucleocapsid_phosphoprotein:GGAGAACGCAGT88-99GGTdel(GERS30-33Gdel)) | 49650 | 0.715 | 6 | 1.000 | 291243 | 0.996 | 28599 | 0.997 | 1049748 | 0.995 | 216095 | 0.994 | 1 | 1.000 | 8 | 1.000 | 385542 | 0.997 | 84161 | 0.509 | 157334 | 0.997 | 11 | 3.2170000000000000 | 6.983 | 10.2 | |
| 28365 | A28365G|(nucleocapsid_phosphoprotein:A92G(E31G)) | 19512 | 0.281 | 80484 | 0.486 | 2 | 0.767 | 0 | 0.767 | ||||||||||||||||||||
| 28383 | C28383T|(nucleocapsid_phosphoprotein:C110T(S37L)) | 19442 | 0.280 | 16 | 0.000 | 2 | 0.000 | 36 | 0.000 | 15 | 0.000 | 22 | 0.000 | 80658 | 0.487 | 13 | 0.000 | 8 | 0.767 | 0.0 | 0.767 | ||||||||
| 28426 | T28426C|(nucleocapsid_phosphoprotein:T153C(S51S)) | 19526 | 0.284 | 36 | 0.000 | 4 | 0.000 | 97 | 0.000 | 26 | 0.000 | 30 | 0.000 | 82518 | 0.499 | 27 | 0.000 | 8 | 0.7830000000000000 | 0.0 | 0.7830000000000000 | ||||||||
| linked | 28472 | C28472T|(nucleocapsid_phosphoprotein:C199T(P67S)) | 19126 | 0.278 | 14 | 0.000 | 41 | 0.000 | 9 | 0.000 | 4 | 0.800 | 14 | 0.000 | 82771 | 0.501 | 8 | 0.000 | 8 | 0.779 | 0.8 | 1.5790000000000000 | |||||||
| 28500 | C28500T|(nucleocapsid_phosphoprotein:C227T(T76I)) | 46 | 0.001 | 10 | 0.000 | 1 | 0.000 | 43 | 0.000 | 8 | 0.000 | 2 | 0.002 | 12 | 0.000 | 81167 | 0.501 | 11 | 0.000 | 9 | 0.502 | 0.002 | 0.504 | ||||||
| linked | 28550 | C28550A|(nucleocapsid_phosphoprotein:C277A(R93R)) | 951 | 0.056 | 38 | 0.000 | 163 | 0.001 | 1 | 0.077 | 80 | 0.001 | 199 | 0.000 | 51 | 0.000 | 74535 | 0.808 | 26 | 0.000 | 9 | 0.8640000000000000 | 0.079 | 0.9430000000000000 | |||||
| 28657 | C28657T|(nucleocapsid_phosphoprotein:C384T(D128D)) | 2954 | 0.166 | 6 | 0.000 | 13 | 0.000 | 6 | 0.000 | 29 | 0.000 | 6 | 0.000 | 77354 | 0.821 | 8 | 0.000 | 8 | 0.987 | 0.0 | 0.987 | ||||||||
| 28869 | C28869T|(nucleocapsid_phosphoprotein:C596T(P199L)) | 20589 | 0.626 | 1 | 0.000 | 1 | 0.000 | 134608 | 0.849 | 4 | 0.000 | 5 | 1.475 | 0.0 | 1.475 | ||||||||||||||
| 28952 | T28952C|(nucleocapsid_phosphoprotein:T679C(L227L)) | 20858 | 0.626 | 5 | 0.000 | 3 | 0.000 | 2 | 0.000 | 1 | 0.000 | 134630 | 0.848 | 10 | 0.000 | 7 | 1.474 | 0.0 | 1.474 | ||||||||||
| 29095 | RATG13 | C29095T|(nucleocapsid_phosphoprotein:C822T(F274F)) | 11 | 0.000 | 5 | 0.000 | 5 | 0.000 | 5 | 0.000 | 1 | 0.000 | 81453 | 0.513 | 7 | 0.000 | 7 | 0.513 | 0.0 | 0.513 | |||||||||
| 29164 | T29164C|(nucleocapsid_phosphoprotein:T891C(D297D)) | 37 | 0.001 | 1 | 0.017 | 7 | 0.000 | 5 | 0.000 | 3 | 0.000 | 2 | 0.000 | 11 | 0.000 | 66050 | 0.695 | 8 | 0.696 | 0.017 | 0.713 | ||||||||
| 29194 | RATG13 | T29194C|(nucleocapsid_phosphoprotein:T921C(F307F)) | 60988 | 0.429 | 167 | 0.000 | 41 | 0.000 | 483 | 0.000 | 76 | 0.000 | 490 | 0.001 | 210250 | 0.898 | 146 | 0.001 | 8 | 1.328 | 0.001 | 1.329 | |||||||
| 29239 | G29239A|(nucleocapsid_phosphoprotein:G966A(M322I)) | 61881 | 0.471 | 34 | 0.000 | 16 | 0.000 | 122 | 0.000 | 30 | 0.000 | 27 | 0.000 | 212799 | 0.998 | 14 | 0.000 | 8 | 1.4690000000000000 | 0.0 | 1.4690000000000000 | ||||||||
| 29249 | C29249T|(nucleocapsid_phosphoprotein:C976T(P326S)) | 61627 | 0.469 | 14 | 0.000 | 3 | 0.000 | 41 | 0.000 | 9 | 0.000 | 21 | 0.000 | 2 | 0.000 | 7 | 0.469 | 0.0 | 0.469 | ||||||||||
| 29250 | C29250A|(nucleocapsid_phosphoprotein:C977A(P326H)) | 23 | 0.000 | 501 | 0.001 | 165 | 0.001 | 1351 | 0.001 | 572 | 0.001 | 490 | 0.001 | 212681 | 0.998 | 43 | 0.000 | 8 | 0.999 | 0.004 | 1.003 | ||||||||
| 29377 | T29377A|(nucleocapsid_phosphoprotein:T1104A(P368P)) | 62321 | 0.468 | 488 | 0.001 | 158 | 0.001 | 1318 | 0.001 | 508 | 0.001 | 398 | 0.000 | 208043 | 0.964 | 122 | 0.001 | 8 | 1.434 | 0.003 | 1.4370000000000000 | ||||||||
| 29709 | T29709G | 38366 | 0.469 | 41 | 0.000 | 126 | 0.000 | 311552 | 0.867 | 70 | 0.000 | 5 | 1.3360000000000000 | 0.0 | 1.3360000000000000 | ||||||||||||||
| 29734 | G29734C | 2 | 0.000 | 4 | 0.000 | 303968 | 0.846 | 1 | 0.000 | 4 | 0.846 | 0.0 | 0.846 | ||||||||||||||||
| 29736 | GGCCACGCGGAGTACGATCGAGTG29736-29759del | 37537 | 0.468 | 13 | 0.000 | 5 | 0.000 | 305175 | 0.849 | 3 | 0.000 | 5 | 1.317 | 0.0 | 1.317 |