NJ-1 - Complete Raw Mutation Data

Full TSV data with all sample columns and abundance information
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Complete Mutations Data

This table shows the complete data from the mutations.tsv file exactly as it appears in the source. Scroll horizontally to see all columns.

SRR26963081(7652158) SRR27023730(1658510) SRR27023734(1743478) SRR27023780(1498226) SRR27050435(3356465) SRR27152965(1332207) SRR27152979(1370387) SRR27178282(2740078) SRR27228413(1003785) SRR27228429(988368) SRR27240495(1670033) SRR27318288(1116088) SRR27318293(1179387) SRR27340850(1693529) SRR27391716(4053630) SRR27464188(980043) SRR27464193(1085098) SRR27464240(1884656) SRR27464243(2339893) SRR27464300(1273862) SRR27533535(1276574) SRR27563993(1396949) SRR27717563(1130942) SRR27717577(1298059) SRR27717596(891296) SRR27746262(2614566)
('2023-11-19', '45878') ('2023-11-21', '1500000') ('2023-11-20', '1500000') ('2023-11-16', '220000') ('2023-11-26', '45878') ('2023-11-28', '220000') ('2023-11-26', '220000') ('2023-12-04', '45878') ('2023-12-05', '220000') ('2023-12-03', '220000') ('2023-12-10', '45878') ('2023-12-07', '220000') ('2023-12-10', '220000') ('2023-12-17', '45878') ('2023-12-24', '45878') ('2023-12-27', '220000') ('2023-12-27', '1500000') ('2023-12-19', '220000') ('2023-12-20', '220000') ('2023-12-26', '220000') ('2024-01-03', '45878') ('2024-01-07', '45878') ('2024-01-10', '1500000') ('2024-01-09', '220000') ('2024-01-07', '220000') ('2024-01-16', '45878')
Sequences Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Total samples Positives Sum Negatives Sum Total Sum
21 C21T 1 1.000 1 1.0 0 1.0
44 C44T 1 0.500 1 0.5 0 0.5
178 A178G 5 0.000 13267 0.867 3 0.000 3 0.000 1 0.000 2 0.000 2 0.000 1 0.000 1 0.000 1 0.000 1 0.000 11 0.867 0.0 0.867
linked 241 Delta C241T 65979 0.999 7982 0.999 2045 0.131 28533 0.999 12592 0.999 5517 0.999 43258 0.999 3564 0.998 2797 0.999 29398 0.999 16712 0.971 5587 0.969 12568 0.998 1120 0.999 14162 0.999 18445 0.999 7157 0.999 5640 0.999 27004 0.999 17164 0.998 7986 0.999 19011 0.999 13230 0.999 16500 0.999 8500 0.999 25 3.128 20.918 24.046
336 G336T|(ORF1ab_polyprotein:G71T(R24L))|(ORF1a_polyprotein:G71T(R24L)) 12 0.000 7857 0.998 1 0.000 3 0.000 5 0.000 2 0.000 19 0.000 1 0.000 4 0.000 2 0.000 5 0.001 7 0.001 1 0.001 1 0.000 5 0.000 1 0.000 6 0.000 1 0.000 3 0.000 12 0.001 11 0.001 16 0.001 3 0.000 23 0.999 0.005 1.004
344 C344T|(ORF1ab_polyprotein:C79T(L27F))|(ORF1a_polyprotein:C79T(L27F)) 5 0.000 6961 0.455 1 0.000 1 0.000 1 0.000 5 0.455 0.0 0.455
344 C344T|(ORF1ab_polyprotein:CTC79-81TTT(L27F))|(ORF1a_polyprotein:CTC79-81TTT(L27F)) 1 0.000 6309 0.412 1 0.000 1 0.000 1 0.000 1 0.000 1 0.000 1 0.000 8 0.412 0.0 0.412
346 C346T|(ORF1ab_polyprotein:CTC79-81TTT(L27F))|(ORF1a_polyprotein:CTC79-81TTT(L27F)) 1 0.000 6309 0.412 1 0.000 1 0.000 1 0.000 1 0.000 1 0.000 1 0.000 8 0.412 0.0 0.412
347 G347A|(ORF1ab_polyprotein:G82A(V28I))|(ORF1a_polyprotein:G82A(V28I)) 2 0.000 8097 0.529 1 0.000 2 0.000 2 0.000 1 0.000 4 0.000 1 0.001 3 0.000 1 0.000 1 0.000 2 0.000 1 0.000 1 0.000 14 0.529 0.001 0.53
378 RATG13 T378C|(ORF1ab_polyprotein:T113C(V38A))|(ORF1a_polyprotein:T113C(V38A)) 7 0.000 23 0.003 13266 0.865 1 0.000 3 0.000 1 0.000 1 0.000 4 0.000 1 0.000 1 0.000 1 0.000 1 0.000 2 0.000 1 0.000 2 0.000 15 0.868 0.0 0.868
501 C501T|(ORF1ab_polyprotein:C236T(A79V))|(ORF1a_polyprotein:C236T(A79V)) 11 0.220 1 0.22 0 0.22
541 RATG13 C541T|(ORF1ab_polyprotein:C276T(L92L))|(ORF1a_polyprotein:C276T(L92L)) 6 0.150 1 0.15 0 0.15
668 A668C|(ORF1ab_polyprotein:A403C(S135R))|(ORF1a_polyprotein:A403C(S135R)) 24 0.400 6 0.103 2 0.503 0 0.503
linked 670 T670G|(ORF1ab_polyprotein:T405G(S135R))|(ORF1a_polyprotein:T405G(S135R)) 447 0.991 36 0.003 52 0.002 83 0.806 127 0.977 66 1.000 65 0.970 286 0.986 22 1.000 33 1.000 114 0.974 41 1.000 71 0.887 96 0.960 144 0.960 36 1.000 56 0.982 106 1.000 289 0.997 67 1.000 146 0.973 129 0.956 40 0.889 33 0.868 48 0.980 110 0.973 26 1.876 21.258 23.134
754 T754C|(ORF1ab_polyprotein:T489C(T163T))|(ORF1a_polyprotein:T489C(T163T)) 9 0.000 11087 0.999 12400 0.468 1 0.000 5 0.000 2 0.000 4 0.000 4 0.000 2 0.000 2 0.000 3 0.000 2 0.000 3 0.000 3 0.000 1 0.000 2 0.000 2 0.000 6 0.000 18 1.467 0.0 1.467
788 C788T|(ORF1ab_polyprotein:C523T(R175C))|(ORF1a_polyprotein:C523T(R175C)) 4 0.000 2 0.000 14332 0.529 1 0.000 2 0.000 4 0.000 3 0.000 1 0.000 4 0.000 8 0.000 5 0.000 4 0.000 3 0.000 1 0.000 1 0.000 1 0.000 2 0.000 12 0.000 18 0.529 0.0 0.529
794 C794A|(ORF1ab_polyprotein:C529A(L177I))|(ORF1a_polyprotein:C529A(L177I)) 36 0.000 11269 0.993 12601 0.465 1 0.000 30 0.000 7 0.000 18 0.000 38 0.001 1 0.000 27 0.000 13 0.000 9 0.000 15 0.000 37 0.000 5 0.000 9 0.000 4 0.000 6 0.000 23 0.000 5 0.000 17 0.000 13 0.000 5 0.000 54 0.001 24 1.458 0.002 1.46
967 T967C|(ORF1ab_polyprotein:T702C(H234H))|(ORF1a_polyprotein:T702C(H234H)) 15 0.000 14016 0.530 5 0.000 3 0.000 5 0.000 2 0.000 2 0.000 1 0.000 2 0.000 2 0.000 5 0.000 1 0.000 2 0.000 4 0.000 1 0.000 4 0.000 3 0.000 1 0.000 3 0.000 5 0.000 20 0.53 0.0 0.53
1153 T1153C|(ORF1ab_polyprotein:T888C(F296F))|(ORF1a_polyprotein:T888C(F296F)) 1068 0.999 1 0.002 53 0.068 3 1.067 0.002 1.069
1451 A1451G|(ORF1ab_polyprotein:A1186G(I396V))|(ORF1a_polyprotein:A1186G(I396V)) 88 1.000 1 0.002 2 1.0 0.002 1.002
1459 T1459G|(ORF1ab_polyprotein:T1194G(R398R))|(ORF1a_polyprotein:T1194G(R398R)) 88 1.000 1 0.001 1 0.001 1 0.004 3 0.010 1 0.002 1 0.003 1 0.003 1 0.002 9 1.003 0.023000000000000003 1.0259999999999998
1616 C1616A|(ORF1ab_polyprotein:C1351A(L451I))|(ORF1a_polyprotein:C1351A(L451I)) 88 0.010 6767 0.195 1 0.000 1 0.000 2 0.000 1 0.000 1 0.000 1 0.000 1 0.000 6 0.000 1 0.000 1 0.000 3 0.000 4 0.000 1 0.000 2 0.000 3 0.001 17 0.20500000000000002 0.001 0.20600000000000002
1702 T1702C|(ORF1ab_polyprotein:T1437C(S479S))|(ORF1a_polyprotein:T1437C(S479S)) 1 0.000 6776 0.194 2 0.000 3 0.000 1 0.000 1 0.000 1 0.000 14 0.002 5 0.000 1 0.000 3 0.000 4 0.000 2 0.000 1 0.000 2 0.000 15 0.194 0.002 0.196
1738 G1738A|(ORF1ab_polyprotein:G1473A(V491V))|(ORF1a_polyprotein:G1473A(V491V)) 5443 0.155 1 0.000 1 0.000 1 0.000 1 0.000 5 0.155 0.0 0.155
1758 C1758T|(ORF1ab_polyprotein:C1493T(A498V))|(ORF1a_polyprotein:C1493T(A498V)) 6853 0.195 1 0.000 1 0.000 1 0.000 4 0.195 0.0 0.195
2756 A2756G|(ORF1ab_polyprotein:A2491G(I831V))|(ORF1a_polyprotein:A2491G(I831V)) 1 0.000 1103 0.528 1 0.001 1 0.001 4 0.529 0.001 0.53
2783 A2783-2783del|(ORF1ab_polyprotein:2518-2518del(840fs))|(ORF1a_polyprotein:2518-2518del(840fs)) 979 0.469 1 0.469 0 0.469
linked 2790 C2790T|(ORF1ab_polyprotein:C2525T(T842I))|(ORF1a_polyprotein:C2525T(T842I)) 7863 0.998 981 0.470 2474 0.996 588 1.000 599 0.997 1620 0.998 606 0.995 83 0.988 2069 0.995 224 0.991 14 1.000 1088 0.996 54 1.000 19 1.000 27 1.000 1590 0.997 53 0.981 187 0.995 3735 0.998 369 0.992 37 1.000 3319 0.996 4829 0.996 2224 0.995 64 1.000 25 3.4589999999999996 20.915 24.374
linkedubiq 3037 RATG13,Delta C3037T|(ORF1ab_polyprotein:C2772T(F924F))|(ORF1a_polyprotein:C2772T(F924F)) 3891 0.995 5422 0.994 3228 0.993 4758 0.994 11587 0.995 2226 0.992 1850 0.996 6537 0.992 1202 0.993 3733 0.992 1518 0.995 1309 0.983 1627 0.972 5793 0.992 17229 0.993 1366 0.999 2030 0.996 9087 0.993 4482 0.996 2332 0.991 4534 0.992 2362 0.998 1331 0.990 1489 0.995 1285 0.988 3615 0.994 26 3.973 21.83 25.802999999999997
3170 C3170T|(ORF1ab_polyprotein:C2905T(L969F))|(ORF1a_polyprotein:C2905T(L969F)) 2 0.000 294 0.148 2 0.000 3 0.148 0.0 0.148
3337 A3337C|(ORF1ab_polyprotein:A3072C(E1024D))|(ORF1a_polyprotein:A3072C(E1024D)) 261 0.390 1 0.001 2 0.39 0.001 0.391
3358 T3358C|(ORF1ab_polyprotein:T3093C(Y1031Y))|(ORF1a_polyprotein:T3093C(Y1031Y)) 26 0.252 1 0.252 0 0.252
3551 C3551T|(ORF1ab_polyprotein:C3286T(P1096S))|(ORF1a_polyprotein:C3286T(P1096S)) 1 0.000 1 0.000 4 0.000 875 0.240 1 0.000 1 0.000 1 0.000 1 0.000 8 0.24 0.0 0.24
linked 3565 T3565C|(ORF1ab_polyprotein:T3300C(G1100G))|(ORF1a_polyprotein:T3300C(G1100G)) 2 0.000 6295 0.428 1 0.000 769 0.056 8125 0.999 3295 0.367 3567 0.475 9731 0.893 4837 0.697 7392 0.770 3558 0.999 31781 0.800 19490 0.998 2943 0.759 6568 0.998 5659 0.999 3435 0.997 4238 0.418 4628 0.834 11106 0.997 20 1.996 11.488 13.484
3691 A3691C|(ORF1ab_polyprotein:A3426C(E1142D))|(ORF1a_polyprotein:A3426C(E1142D)) 5787 0.273 4 0.000 7 0.000 1 0.000 4 0.001 2 0.000 8 0.001 4 0.000 2 0.000 2 0.000 1 0.000 3 0.001 5 0.000 1 0.000 7 0.001 2 0.001 15 0.000 7 0.000 2 0.000 1 0.000 2 0.000 1 0.000 9 0.001 23 0.274 0.005 0.279
3712 A3712G|(ORF1ab_polyprotein:A3447G(L1149L))|(ORF1a_polyprotein:A3447G(L1149L)) 5789 0.273 1 0.000 3 0.000 1 0.000 1 0.000 8 0.000 4 0.000 1 0.000 8 0.273 0.0 0.273
3817 C3817T|(ORF1ab_polyprotein:C3552T(D1184D))|(ORF1a_polyprotein:C3552T(D1184D)) 2 0.000 3736 0.234 1 0.000 1 0.000 1 0.000 1 0.000 1 0.000 1 0.000 8 0.234 0.0 0.234
3828 C3828T|(ORF1ab_polyprotein:C3563T(S1188L))|(ORF1a_polyprotein:C3563T(S1188L)) 5718 0.238 3780 0.166 1 0.000 1 0.000 2 0.000 1 0.000 1 0.000 1 0.000 4 0.000 129 0.013 5 0.000 4 0.001 1 0.000 3 0.000 1 0.000 15 0.418 0.0 0.418
linkedubiq 4184 G4184A|(ORF1ab_polyprotein:G3919A(G1307S))|(ORF1a_polyprotein:G3919A(G1307S)) 17174 0.999 36789 0.998 21658 0.998 24657 0.999 31072 0.999 12789 0.999 36526 0.998 40690 0.999 25335 0.999 23601 0.999 18756 0.999 8583 1.000 17340 0.999 13040 0.998 20859 0.998 10503 0.998 76853 0.993 6682 0.999 17525 0.998 18197 0.999 5277 0.982 13434 0.982 6832 0.980 40326 0.993 24 3.976 19.928999999999995 23.904999999999994
4270 T4270C|(ORF1ab_polyprotein:T4005C(N1335N))|(ORF1a_polyprotein:T4005C(N1335N)) 1 0.000 6331 0.289 3 0.000 1 0.000 2 0.000 2 0.000 5 0.000 2 0.000 1 0.000 2 0.000 1 0.000 1 0.000 1 0.000 4 0.000 1 0.000 2 0.000 1 0.000 5 0.000 18 0.289 0.0 0.289
linkedubiq 4321 C4321T|(ORF1ab_polyprotein:C4056T(A1352A))|(ORF1a_polyprotein:C4056T(A1352A)) 17314 0.998 37134 0.998 21860 0.997 24863 0.998 31404 0.997 12871 0.988 36972 0.997 41193 0.997 25658 0.997 23825 0.998 19528 0.997 8944 0.998 17640 0.994 13248 0.998 21037 0.997 10615 0.998 78558 0.997 6752 0.998 17901 0.997 18348 0.999 5542 0.995 14116 0.995 7205 0.997 41183 0.995 24 3.9879999999999995 19.932 23.919999999999998
linked 4489 4489-insertC|(ORF1ab_polyprotein:4224insertC(1408fs))|(ORF1a_polyprotein:4224insertC(1408fs)) 1 0.143 1 0.143 0 0.143
4493 A4493G|(ORF1ab_polyprotein:A4228G(K1410E))|(ORF1a_polyprotein:A4228G(K1410E)) 5 0.000 1 1.000 1 0.000 5 0.000 5 0.000 2 0.000 3 0.000 2 0.000 5 0.000 8 0.000 13 0.001 2 0.000 3 0.000 1 0.000 3 0.000 29 0.001 16 1.0 0.002 1.002
4497 T4497C|(ORF1ab_polyprotein:T4232C(I1411T))|(ORF1a_polyprotein:T4232C(I1411T)) 8 0.000 1 1.000 1 0.000 3 0.000 4 0.000 2 0.000 2 0.000 1 0.000 2 0.000 1 0.000 6 0.000 2 0.000 1 0.000 5 0.000 14 1.0 0.0 1.0
4795 RATG13 C4795T|(ORF1ab_polyprotein:C4530T(S1510S))|(ORF1a_polyprotein:C4530T(S1510S)) 13126 0.284 1 0.000 1 0.000 1 0.000 3 0.000 2 0.000 1 0.000 3 0.000 2 0.000 9 0.284 0.0 0.284
4822 A4822C|(ORF1ab_polyprotein:A4557C(Q1519H))|(ORF1a_polyprotein:A4557C(Q1519H)) 12445 0.269 2 0.000 5 0.000 3 0.000 1 0.000 2 0.000 1 0.000 8 0.000 3 0.000 5 0.000 4 0.000 2 0.000 5 0.000 7 0.000 2 0.000 2 0.000 4 0.000 17 0.269 0.0 0.269
4928 A4928C|(ORF1ab_polyprotein:A4663C(N1555H))|(ORF1a_polyprotein:A4663C(N1555H)) 4 0.000 12561 0.269 8 0.000 7 0.000 12 0.000 8 0.000 5 0.000 16 0.000 8 0.000 7 0.000 7 0.000 6 0.000 5 0.000 10 0.000 7 0.000 4 0.000 7 0.000 1 0.000 3 0.000 9 0.000 8 0.000 17 0.000 22 0.269 0.0 0.269
5117 TT5117-5118del|(ORF1ab_polyprotein:4852-4853del(1618fs))|(ORF1a_polyprotein:4852-4853del(1618fs)) 1539 0.193 1 0.193 0 0.193
5248 RATG13 T5248C|(ORF1ab_polyprotein:T4983C(V1661V))|(ORF1a_polyprotein:T4983C(V1661V)) 4006 0.493 1 0.000 2 0.000 1 0.000 1 0.000 1 0.000 1 0.000 7 0.493 0.0 0.493
5310 C5310T|(ORF1ab_polyprotein:C5045T(T1682I))|(ORF1a_polyprotein:C5045T(T1682I)) 2013 0.252 1 0.000 2 0.252 0.0 0.252
5392 RATG13 C5392T|(ORF1ab_polyprotein:C5127T(N1709N))|(ORF1a_polyprotein:C5127T(N1709N)) 8094 0.642 1 0.000 1 0.000 1 0.001 1 0.000 5 0.642 0.001 0.643
5648 RATG13 A5648C|(ORF1ab_polyprotein:A5383C(K1795Q))|(ORF1a_polyprotein:A5383C(K1795Q)) 2 0.000 4611 0.984 1 0.000 3 0.000 1 0.000 4 0.001 6 0.984 0.001 0.985
5758 C5758T|(ORF1ab_polyprotein:C5493T(Y1831Y))|(ORF1a_polyprotein:C5493T(Y1831Y)) 1 0.000 6730 0.361 1 0.000 1 0.000 1 0.000 1 0.000 6 0.361 0.0 0.361
linked 5817 CTTTA5817-5821del|(ORF1ab_polyprotein:5552-5556del(1851fs))|(ORF1a_polyprotein:5552-5556del(1851fs)) 6783 0.359 1 1.000 2 0.359 1.0 1.359
5830 G5830A|(ORF1ab_polyprotein:G5565A(K1855K))|(ORF1a_polyprotein:G5565A(K1855K)) 2 0.000 6786 0.359 1 0.000 1 0.000 4 0.002 1 0.000 6 0.359 0.002 0.361
6543 C6543T|(ORF1ab_polyprotein:C6278T(T2093I))|(ORF1a_polyprotein:C6278T(T2093I)) 3 0.000 22822 0.663 3 0.000 3 0.000 1 0.000 2 0.000 2 0.000 4 0.000 5 0.000 1 0.000 3 0.000 2 0.000 12 0.663 0.0 0.663
6597 6597-insertC|(ORF1ab_polyprotein:6332insertC(2111fs))|(ORF1a_polyprotein:6332insertC(2111fs)) 2 1.000 1 0.001 2 1.0 0.001 1.001
6781 C6781T|(ORF1ab_polyprotein:C6516T(F2172F))|(ORF1a_polyprotein:C6516T(F2172F)) 1 0.000 1 0.000 187 0.174 1 0.000 1 0.000 5 0.174 0.0 0.174
6884 G6884A|(ORF1ab_polyprotein:G6619A(G2207S))|(ORF1a_polyprotein:G6619A(G2207S)) 20 0.000 13339 0.368 1 0.000 12 0.000 1 0.000 20 0.000 1 0.000 4 0.000 6 0.000 3 0.000 2 0.000 634 0.063 1 0.000 1 0.000 14 0.431 0.0 0.431
7106 T7106C|(ORF1ab_polyprotein:T6841C(Y2281H))|(ORF1a_polyprotein:T6841C(Y2281H)) 9 0.000 16541 0.500 1 0.000 4 0.000 1 0.000 4 0.001 3 0.000 2 0.000 10 0.000 2 0.000 8 0.000 5 0.000 1 0.000 2 0.000 1 0.000 658 0.070 1 0.000 1 0.000 10 0.000 19 0.5700000000000001 0.001 0.5710000000000001
7251 T7251C|(ORF1ab_polyprotein:T6986C(L2329S))|(ORF1a_polyprotein:T6986C(L2329S)) 1237 0.621 1 0.000 1 0.000 3 0.621 0.0 0.621
8237 T8237G|(ORF1ab_polyprotein:T7972G(S2658A))|(ORF1a_polyprotein:T7972G(S2658A)) 28 0.000 15941 0.280 7 0.000 30 0.000 42 0.000 12 0.000 20 0.000 2 0.000 4 0.000 17 0.000 8 0.000 33 0.000 10 0.000 8 0.001 8 0.000 15 0.000 3 0.000 1271 0.048 12 0.000 5 0.000 46 0.000 21 0.328 0.001 0.329
linked 8293 C8293T|(ORF1ab_polyprotein:C8028T(T2676T))|(ORF1a_polyprotein:C8028T(T2676T)) 66952 0.484 20343 0.357 14289 0.535 33823 0.355 4 0.000 1 0.000 19880 0.205 2923 0.817 8682 0.367 24345 0.717 105287 0.499 1 1.000 27273 0.998 10275 0.993 21339 0.680 31627 0.833 40987 0.999 25244 0.949 23818 0.684 25818 0.903 119229 0.996 21 2.3040000000000003 11.067 13.371
8381 A8381G|(ORF1ab_polyprotein:A8116G(S2706G))|(ORF1a_polyprotein:A8116G(S2706G)) 6 0.000 4 0.000 20 0.001 1 0.000 3 0.000 3 0.000 1 0.000 1 0.000 2 0.001 2 0.000 3 0.000 12 0.000 4364 0.161 1 0.000 2 0.000 2 0.000 1 0.000 1 0.000 5 0.000 19 0.161 0.002 0.163
linked 8393 G8393A|(ORF1ab_polyprotein:G8128A(A2710T))|(ORF1a_polyprotein:G8128A(A2710T)) 66258 0.484 20118 0.356 14165 0.535 33387 0.355 5 0.000 2 0.000 19706 0.205 2878 0.816 8573 0.378 2 0.000 23883 0.715 104272 0.499 1 1.000 27042 0.998 10047 0.998 21096 0.680 31123 0.833 40630 0.997 24015 0.930 22635 0.669 24679 0.888 116701 0.997 22 2.284 11.049000000000001 13.333000000000002
8540 G8540A|(ORF1ab_polyprotein:G8275A(A2759T))|(ORF1a_polyprotein:G8275A(A2759T)) 2212 0.997 2 0.000 2 0.001 1 0.000 4 0.998 0.0 0.998
8563 8563-insertTAA|(ORF1ab_polyprotein:GTT8296-8298GTTAATinsert(V2766VN))|(ORF1a_polyprotein:GTT8296-8298GTTAATinsert(V2766VN)) 2222 0.992 1 0.992 0 0.992
8585 A8585C|(ORF1ab_polyprotein:A8320C(I2774L))|(ORF1a_polyprotein:A8320C(I2774L)) 9 0.001 2235 0.997 4 0.000 6 0.001 1 0.001 1 0.001 3 0.002 6 0.001 4 0.000 1 0.001 4 0.000 1 0.001 8 0.002 1 0.000 1 0.001 2 0.000 16 0.998 0.011 1.009
9430 C9430T|(ORF1ab_polyprotein:C9165T(I3055I))|(ORF1a_polyprotein:C9165T(I3055I)) 1 0.000 5751 0.951 1 0.000 1 0.000 2 0.000 723 0.147 1 0.000 1 0.000 1 0.000 9 1.0979999999999999 0.0 1.0979999999999999
9707 A9707G|(ORF1ab_polyprotein:A9442G(I3148V))|(ORF1a_polyprotein:A9442G(I3148V)) 1 0.000 9504 0.362 1274 0.119 3 0.000 3 0.000 1 0.000 2 0.000 1 0.000 1 0.000 1 0.000 1 0.000 1 0.000 2 0.000 1 0.000 1 0.000 2 0.000 16 0.481 0.0 0.481
9929 G9929A|(ORF1ab_polyprotein:G9664A(D3222N))|(ORF1a_polyprotein:G9664A(D3222N)) 5 0.000 9403 0.363 5199 0.418 3 0.000 2 0.000 4 0.000 1 0.000 4 0.000 3 0.000 1 0.000 2 0.000 11 0.7809999999999999 0.0 0.7809999999999999
10350 C10350T|(ORF1ab_polyprotein:C10085T(P3362L))|(ORF1a_polyprotein:C10085T(P3362L)) 2 0.000 5455 0.426 1 0.000 2 0.000 2 0.000 1 0.000 2 0.000 1 0.000 8 0.426 0.0 0.426
linked 10447 RATG13 G10447A|(ORF1ab_polyprotein:G10182A(R3394R))|(ORF1a_polyprotein:G10182A(R3394R)) 71222 0.999 12797 0.999 16273 0.998 52992 0.998 12953 0.991 9181 0.991 26769 0.998 17768 0.998 9035 0.998 42442 0.998 25036 0.998 7312 0.998 39806 0.994 62796 0.998 10136 0.998 8538 0.999 32559 0.999 44127 0.998 12114 0.999 28130 0.998 22543 0.999 10543 0.997 4786 0.997 6973 0.997 52492 0.997 25 2.995 21.939000000000004 24.934000000000005
linked 10449 C10449A|(ORF1ab_polyprotein:C10184A(P3395H))|(ORF1a_polyprotein:C10184A(P3395H)) 71212 0.999 12799 0.999 1 0.001 16278 0.998 52969 0.998 13037 0.998 9238 0.998 26759 0.998 17769 0.998 9034 0.997 42436 0.998 25033 0.998 7316 0.999 39931 0.997 62745 0.997 10142 0.998 8530 0.998 32559 0.999 44139 0.999 12114 0.999 28123 0.998 22506 0.998 10543 0.997 4784 0.996 6974 0.997 52405 0.996 26 2.995 21.953000000000007 24.948000000000008
10775 C10775T|(ORF1ab_polyprotein:C10510T(P3504S))|(ORF1a_polyprotein:C10510T(P3504S)) 8 0.000 1 0.000 12498 0.351 1 0.000 1 0.000 4 0.000 2 0.000 1 0.000 2 0.000 3 0.000 1 0.000 11 0.351 0.0 0.351
11029 G11029T|(ORF1ab_polyprotein:G10764T(L3588F))|(ORF1a_polyprotein:G10764T(L3588F)) 44 0.001 14 0.001 3952 0.998 8 0.001 28 0.001 1 0.000 3 0.001 10 0.001 6 0.000 17 0.001 16 0.001 11 0.001 11 0.001 18 0.001 16 0.000 5 0.001 4 0.000 17 0.001 19 0.001 5 0.001 2 0.000 11 0.001 4 0.001 5 0.000 6 0.001 59 0.001 26 1.0 0.017000000000000008 1.017
11081 RATG13 T11081G|(ORF1ab_polyprotein:T10816G(L3606V))|(ORF1a_polyprotein:T10816G(L3606V)) 5 0.000 3954 0.999 1 0.000 1 0.000 2 0.000 1 0.000 1 0.000 2 0.000 1 0.000 1 0.000 1 0.000 1 0.000 2 0.000 1 0.000 4 0.001 274 0.048 5 0.000 4 0.000 18 1.047 0.001 1.0479999999999998
11200 RATG13 C11200T|(ORF1ab_polyprotein:C10935T(A3645A))|(ORF1a_polyprotein:C10935T(A3645A)) 3 0.000 2538 0.228 1 0.000 1 0.000 1 0.000 2 0.000 1 0.000 1 0.000 8 0.228 0.0 0.228
11450 C11450A|(ORF1ab_polyprotein:C11185A(Q3729K))|(ORF1a_polyprotein:C11185A(Q3729K)) 8 0.000 3813 0.342 1 0.000 6 0.000 1 0.000 1 0.000 6 0.342 0.0 0.342
ubiq 12880 C12880T|(ORF1ab_polyprotein:C12615T(I4205I))|(ORF1a_polyprotein:C12615T(I4205I)) 28368 0.999 4053 0.999 3711 0.999 1223 0.515 9150 0.998 1150 0.998 1615 0.998 1403 1.000 7824 0.998 312 1.000 2344 1.000 3642 0.998 947 0.997 21634 0.999 32 1.000 6140 0.999 1109 0.999 1526 0.999 3911 0.998 620 0.995 747 0.997 5312 0.996 7815 0.877 2409 0.999 2186 0.999 25 3.9930000000000003 20.363000000000007 24.35600000000001
13431 C13431T|(ORF1ab_polyprotein:C13166T(P4389L))|(ORF1a_polyprotein:C13166T(P4389L)) 17465 0.997 1 0.000 3 0.001 2 0.000 1 0.000 3 0.007 1 0.000 3 0.000 1 0.000 9 0.997 0.008 1.005
13862 C13862T|(ORF1ab_polyprotein:C13598T(T4533I)) 2 0.000 1 0.000 3 0.000 1 0.000 2 0.000 1 0.000 1 0.000 4 0.000 1 0.000 3775 0.352 2 0.000 1 0.000 12 0.352 0.0 0.352
14144 A14144C|(ORF1ab_polyprotein:A13880C(D4627A)) 2 0.000 3 0.000 12527 0.990 1 0.000 1 0.000 2 0.000 1 0.000 7 0.99 0.0 0.99
14182 A14182G|(ORF1ab_polyprotein:A13918G(T4640A)) 26 0.000 1 0.000 12638 0.998 4 0.000 2 0.000 3 0.000 2 0.000 2 0.000 1 0.000 6 0.000 1 0.000 3 0.000 1 0.000 3 0.000 1 0.000 1 0.000 1 0.000 3 0.000 2 0.000 19 0.998 0.0 0.998
14309 G14309T|(ORF1ab_polyprotein:G14045T(W4682L)) 83 0.001 110 0.004 13264 0.996 59 0.004 69 0.001 7 0.000 26 0.001 16 0.001 16 0.001 19 0.000 18 0.001 5 0.000 20 0.000 52 0.001 12 0.001 12 0.001 20 0.001 99 0.002 9 0.000 5 0.000 7 0.000 12 0.001 20 0.001 14 0.001 50 0.001 25 1.002 0.018000000000000002 1.02
linkedubiq 14408 Delta C14408T|(ORF1ab_polyprotein:C14144T(P4715L)) 160776 0.999 28447 0.999 12842 0.999 14762 0.999 87716 0.999 1 1.000 20054 0.999 41126 0.999 30494 0.999 26124 0.999 58521 0.999 30585 0.999 9700 0.999 43533 0.998 85224 0.999 17879 0.999 20835 0.999 16760 0.999 62050 0.999 19198 0.999 26623 0.999 24487 0.999 18963 0.999 29532 0.998 20140 0.998 42562 0.998 26 3.996 21.974999999999994 25.970999999999993
14740 T14740C|(ORF1ab_polyprotein:T14476C(S4826P)) 1241 0.300 1 0.000 2 0.000 1 0.000 1 0.000 2 0.000 2 0.000 7 0.3 0.0 0.3
15028 T15028C|(ORF1ab_polyprotein:T14764C(Y4922H)) 1244 0.355 1 0.000 5 0.003 1 0.001 1 0.000 5 0.355 0.004 0.359
15148 C15148T|(ORF1ab_polyprotein:C14884T(Q4962*)) 3345 0.245 1 0.000 6 0.000 1 0.000 3 0.000 1 0.000 6 0.245 0.0 0.245
linked 15714 RATG13 C15714T|(ORF1ab_polyprotein:C15450T(L5150L)) 13166 0.999 2049 0.997 2 0.001 7570 0.999 13076 0.999 1644 0.999 12576 0.998 181 1.000 129 1.000 972 0.999 1573 0.998 969 0.999 3936 0.999 8045 0.998 3071 0.999 4014 0.999 4147 0.998 1565 1.000 5674 0.999 2063 0.999 3318 0.999 4429 0.998 3577 0.999 3577 0.998 5312 0.999 25 2.9949999999999997 20.976999999999997 23.971999999999998
linked 15756 T15756A|(ORF1ab_polyprotein:T15492A(S5164S)) 6498 0.477 1 0.000 4 0.002 1302 0.169 3061 0.229 2 0.001 1460 0.115 128 1.000 1703 0.418 7552 0.918 1561 0.501 3936 0.947 3521 0.833 2563 0.430 2082 0.984 3376 0.997 4563 0.980 3647 0.985 1996 0.539 5367 0.999 20 1.929 9.595 11.524000000000001
15857 C15857T|(ORF1ab_polyprotein:C15593T(T5198I)) 1 0.000 1058 0.251 1 0.000 1 0.000 4 0.251 0.0 0.251
16076 A16076G|(ORF1ab_polyprotein:A15812G(D5271G)) 9 0.000 23493 0.357 11691 0.413 2 0.000 12 0.000 1 0.000 5 0.000 5 0.000 2 0.000 1 0.000 1 0.000 4 0.000 4 0.000 2 0.000 7 0.000 2 0.000 2 0.000 4 0.000 18 0.77 0.0 0.77
16093 T16093C|(ORF1ab_polyprotein:T15829C(L5277L)) 15 0.000 23476 0.357 11691 0.413 1 0.000 8 0.000 2 0.000 4 0.000 5 0.000 2 0.000 7 0.000 3 0.000 4 0.000 3 0.000 2 0.000 8 0.000 1 0.000 2 0.000 2 0.000 1 0.000 2 0.000 3 0.000 21 0.77 0.0 0.77
17596 G17596T|(ORF1ab_polyprotein:G17332T(A5778S)) 3 0.000 4 0.000 10384 0.270 2 0.000 5 0.000 2 0.000 2 0.000 2 0.000 2 0.000 1 0.000 2 0.000 126 0.003 3 0.000 16 0.001 85 0.001 1 0.000 1 0.000 1 0.000 3 0.000 3 0.000 4 0.000 21 0.27 0.005 0.275
linkedubiq 18163 A18163G|(ORF1ab_polyprotein:A17899G(I5967V)) 45938 0.999 5782 0.999 10446 0.841 12535 0.999 30227 0.937 4317 1.000 4145 1.000 32278 0.999 6075 0.999 4227 0.999 12833 0.890 2598 0.998 6943 0.999 18289 0.999 22611 0.999 3851 0.999 8490 0.999 18889 0.996 23370 0.996 9545 1.000 5017 0.999 9915 1.000 5345 0.999 6433 0.998 5158 0.939 11688 0.999 26 3.838 21.743 25.581
linked 18492 A18492G|(ORF1ab_polyprotein:A18228G(P6076P)) 8496 0.456 2933 0.999 4131 0.834 1694 0.083 8910 0.200 840 0.043 1774 0.070 11459 0.999 887 0.044 501 0.670 4621 0.248 278 1.000 2246 0.151 5377 0.483 8572 0.998 1 0.001 2170 0.719 3546 0.997 3158 0.772 1725 0.165 945 1.000 2629 0.997 1966 0.999 2653 0.892 1521 0.998 5490 0.994 26 3.551 12.261 15.812
18530 T18530A|(ORF1ab_polyprotein:T18266A(I6089K)) 16 0.000 1 1.000 4 0.000 8 0.000 7 0.000 5 0.000 21 0.000 8 0.000 12 0.000 6 0.000 4 0.000 4 0.000 28 0.000 2 0.000 4 0.000 9 0.000 10 0.000 4 0.000 5 0.000 11 0.000 6 0.000 12 0.000 3 0.000 14 0.000 24 1.0 0.0 1.0
18532 18532-insertG|(ORF1ab_polyprotein:18268insertG(6090fs)) 1 1.000 1 1.0 0 1.0
18535 A18535G|(ORF1ab_polyprotein:A18271G(I6091V)) 6 0.000 1 1.000 2 0.000 2 0.000 6 0.000 4 0.000 3 0.000 6 0.000 8 0.000 2 0.000 1 0.000 1 0.000 8 0.000 2 0.000 1 0.000 9 0.000 2 0.000 1 0.000 1 0.000 2 0.000 1 0.000 3 0.000 22 1.0 0.0 1.0
18538 G18538T|(ORF1ab_polyprotein:G18274T(V6092L)) 1 1.000 1 0.000 2 0.000 3 0.000 3 0.000 5 0.000 1 0.000 3 0.000 3 0.000 1 0.000 1 0.000 3 0.000 1 0.000 1 0.000 4 0.000 2 0.000 1 0.000 1 0.000 1 0.000 5 0.000 3 0.000 2 0.000 4 0.000 23 1.0 0.0 1.0
18813 T18813A|(ORF1ab_polyprotein:T18549A(D6183E)) 4 0.000 1 0.250 1 0.000 1 0.000 2 0.000 1 0.000 3 0.000 3 0.000 1 0.000 2 0.000 2 0.000 6 0.000 7 0.000 1 0.000 1 0.000 6 0.000 16 0.25 0.0 0.25
18816 G18816C|(ORF1ab_polyprotein:G18552C(L6184L)) 5 0.000 1 0.250 4 0.000 3 0.000 10 0.000 2 0.000 7 0.000 7 0.000 2 0.000 5 0.000 1 0.000 4 0.000 11 0.000 1 0.000 2 0.000 9 0.000 4 0.000 1 0.000 3 0.000 4 0.000 4 0.000 3 0.000 11 0.000 23 0.25 0.0 0.25
linked 18838 G18838C|(ORF1ab_polyprotein:G18574C(A6192P)) 58 0.000 9 0.000 1 0.000 5 0.000 17 0.000 3 0.001 7 0.000 4 0.001 3 0.001 2 0.001 4 0.000 2 0.001 6 0.001 1 0.000 2 0.001 3 0.001 3 0.001 21 0.001 22 0.001 17 0.001 5 0.001 21 0.002 0.011000000000000003 0.013000000000000003
linked 18850 A18850G|(ORF1ab_polyprotein:A18586G(S6196G)) 20 0.000 4 0.000 1 0.000 3 0.000 1 0.000 4 0.000 1 0.000 1 0.000 1 0.000 9 0.0 0.0 0.0
linked 18873 G18873C|(ORF1ab_polyprotein:G18609C(R6203S)) 124 0.001 14 0.001 2 0.000 3 0.000 27 0.001 2 0.000 24 0.001 4 0.001 1 0.001 5 0.001 3 0.002 4 0.001 3 0.001 7 0.001 2 0.001 8 0.001 3 0.001 2 0.001 3 0.001 1 0.000 3 0.001 34 0.001 26 0.001 29 0.001 8 0.001 25 0.003 0.01900000000000001 0.02200000000000001
19281 T19281-19281del|(ORF1ab_polyprotein:19017-19017del(6339fs)) 2289 0.282 1 0.282 0 0.282
linked 19326 A19326G|(ORF1ab_polyprotein:A19062G(P6354P)) 22648 0.502 5579 0.688 6522 0.998 6108 0.592 8211 0.642 258 0.996 10407 0.665 5069 0.997 1196 0.149 5353 0.708 850 0.998 4597 0.998 3958 0.289 4955 0.206 414 0.398 3951 0.171 25391 0.997 1762 0.460 887 0.081 682 0.276 794 0.423 21 0.964 11.27 12.234
19496 AT19496-19497del|(ORF1ab_polyprotein:19232-19233del(6411fs)) 17911 0.491 1 0.491 0 0.491
19689 A19689T|(ORF1ab_polyprotein:A19425T(P6475P)) 29 0.000 23539 0.317 5 0.000 4 0.000 9 0.000 7 0.000 5 0.000 33 0.000 4 0.000 2 0.000 12 0.000 5 0.000 7 0.000 8 0.000 14 0.000 3 0.000 3 0.000 7 0.000 20 0.000 7 0.000 8 0.000 3 0.000 5 0.000 6 0.000 6 0.000 25 0.317 0.0 0.317
19789 C19789-19789del|(ORF1ab_polyprotein:19525-19525del(6509fs)) 5990 0.297 1 0.297 0 0.297
linkedubiq 19955 C19955T|(ORF1ab_polyprotein:C19691T(T6564I)) 45566 0.998 20502 0.998 26680 0.998 4564 0.997 15417 0.998 7118 0.996 10589 0.996 2039 0.996 26255 0.997 936 0.998 1574 0.994 33678 0.998 5580 0.996 927 0.997 8959 0.997 7611 0.998 5698 0.998 8182 0.997 19341 0.997 2128 0.997 1931 1.000 11579 0.996 6416 0.994 5771 0.998 651 0.998 25 3.99 20.936999999999994 24.926999999999992
linkedubiq 20055 A20055G|(ORF1ab_polyprotein:A19791G(E6597E)) 42900 0.999 20293 0.999 26348 0.999 4393 0.999 15010 0.999 6636 0.998 4 1.000 10138 0.998 1962 0.998 25726 0.999 849 1.000 1505 0.998 32128 0.999 5372 0.998 810 0.999 9106 1.000 7378 0.999 5374 0.976 7429 0.980 18739 0.999 2050 1.000 1788 1.000 10196 0.993 5753 0.991 4975 0.991 583 0.998 26 3.99 21.919 25.909
20703 C20703T|(ORF1ab_polyprotein:C20439T(Y6813Y)) 5 0.000 35044 0.618 1 0.000 1 0.000 1 0.000 1 0.000 1 0.000 7 0.000 1 0.000 4 0.000 3 0.000 2 0.000 1233 0.056 1 0.000 1 0.000 15 0.674 0.0 0.674
21102 T21102C|(ORF1ab_polyprotein:T20838C(G6946G)) 1 0.000 4 0.000 3185 0.153 2 0.000 1 0.000 3 0.000 1 0.000 2 0.000 1 0.000 7 0.000 6 0.000 5 0.000 1 0.000 1 0.000 1 0.000 2 0.000 16 0.153 0.0 0.153
21575 C21575T|(surface_glycoprotein:C13T(L5F)) 1 0.000 2 0.000 1 0.000 1 0.000 5 0.000 47 0.009 1 0.000 1 0.000 1 0.000 677 0.272 2 0.000 11 0.272 0.009 0.281
21578 G21578A|(surface_glycoprotein:G16A(V6I)) 1 0.000 26786 0.498 1 0.000 2 0.000 38 0.015 5 0.513 0.0 0.513
21604 G21604T|(surface_glycoprotein:G42T(Q14H)) 2 0.000 26581 0.498 1 0.000 1 0.000 3 0.000 1 0.000 8 0.000 1 0.000 2 0.000 1 0.000 1 0.000 37 0.016 1 0.001 4 0.000 14 0.514 0.001 0.515
linked 21609 21609-insertTCATGCCGCTGT|(surface_glycoprotein:GTT46-48GTCATGCCGCTGTTTinsert(V16VMPLF)) 508 0.456 1896 0.096 70 0.385 3852 0.660 1031 0.239 22 0.002 4529 0.635 32262 0.422 772 0.200 4953 0.765 412 0.040 3335 0.788 23288 0.954 1086 0.443 2310 0.968 1434 0.857 10116 0.668 17 0.643 7.9350000000000005 8.578000000000001
21612 A21612G|(surface_glycoprotein:A50G(N17S)) 3 0.000 26579 0.395 2 0.000 3 0.000 1 0.000 2 0.000 1 0.000 6 0.000 37 0.007 12 0.001 10 0.402 0.001 0.403
21618 C21618A|(surface_glycoprotein:C56A(T19K)) 26 0.000 26585 0.395 5 0.000 6 0.000 8 0.000 4 0.000 3 0.000 3 0.000 6 0.001 3 0.000 1 0.000 6 0.000 9 0.000 9 0.000 9 0.000 5 0.000 1 0.000 2 0.000 39 0.007 3 0.000 20 0.402 0.001 0.403
linked 21618 C21618T|(surface_glycoprotein:C56T(T19I)) 109567 0.999 40683 0.604 26134 1.000 25857 1.000 51727 0.999 8301 0.998 60 1.000 30509 0.999 14204 0.999 11233 0.999 17329 0.999 8137 1.000 21829 0.999 18760 0.999 84915 0.999 185 1.000 5803 1.000 6363 0.984 31822 0.998 20188 0.999 6562 0.992 24266 0.998 5617 0.985 6674 0.991 4726 0.993 15037 0.999 26 3.589 21.942999999999998 25.531999999999996
21621 C21621A|(surface_glycoprotein:C59A(T20N)) 238 0.002 26610 0.395 43 0.002 25 0.001 43 0.001 7 0.001 18 0.001 13 0.001 15 0.001 11 0.001 1 0.000 14 0.001 16 0.001 13 0.000 4 0.001 27 0.001 11 0.001 3 0.000 41 0.007 3 0.000 2 0.000 21 0.405 0.013000000000000005 0.41800000000000004
linked 21622 RATG13 C21622T|(surface_glycoprotein:C60T(T20T)) 5 0.000 1 0.000 4 0.000 5685 0.110 1104 0.132 1908 0.062 415 0.029 170 0.015 3868 0.223 1069 0.131 23 0.001 4934 0.262 34064 0.401 795 0.137 6043 0.934 2 0.000 434 0.021 4134 0.622 24274 0.999 1154 0.202 2313 0.343 1466 0.308 14877 0.989 23 0.339 5.582 5.921
linked 21624 G21624C|(surface_glycoprotein:G62C(R21T)) 45 0.000 10 0.000 13 0.000 12 0.000 748 0.014 1108 0.133 1918 0.063 421 0.030 175 0.016 3869 0.223 1070 0.131 27 0.001 4935 0.262 34037 0.400 795 0.137 5941 0.919 14 0.000 443 0.022 4137 0.623 24250 0.998 1175 0.206 2357 0.349 1485 0.312 15032 0.999 24 0.34299999999999997 5.495000000000002 5.838000000000002
21624 G21624T|(surface_glycoprotein:G62T(R21I)) 28 0.000 26588 0.395 3 0.000 1 0.000 10 0.000 9 0.000 1 0.000 1 0.000 4 0.000 2 0.000 2 0.000 4 0.000 12 0.000 1 0.000 7 0.000 3 0.000 1 0.000 1 0.000 36 0.006 1 0.000 20 0.401 0.0 0.401
linked 21633 TACCCCCTG21633-21641del|(surface_glycoprotein:TTACCCCCTGCA70-81TCAdel(LPPA24-27Sdel)) 108575 0.999 40559 0.604 26165 0.999 25734 0.999 51645 0.999 8324 0.998 60 1.000 30244 0.998 14202 0.999 11253 0.999 17306 0.999 8101 0.998 21684 0.999 18699 0.998 84500 0.998 185 1.000 5755 0.998 6442 0.996 31863 0.999 19775 0.999 6621 0.997 24208 0.996 5617 0.990 6717 0.996 4747 0.996 15001 0.997 26 3.591 21.959 25.55
21635 C21635A|(surface_glycoprotein:C73A(P25T)) 26583 0.396 1 0.396 0 0.396
21642 C21642A|(surface_glycoprotein:C80A(A27E)) 26571 0.395 37 0.006 2 0.401 0 0.401
21657 RATG13 T21657C|(surface_glycoprotein:T95C(F32S)) 8 0.000 26512 0.395 4 0.000 1 0.000 1 0.000 1 0.000 1 0.000 4 0.000 10 0.000 1 0.000 4 0.000 2 0.000 4 0.000 34 0.006 1 0.000 1 0.000 16 0.401 0.0 0.401
linkedubiq 21718 G21718T|(surface_glycoprotein:G156T(Q52H)) 90632 0.994 14786 0.993 26753 0.994 11107 0.519 32959 0.650 7373 0.917 1 1.000 4918 0.419 11028 0.955 5318 0.464 6326 0.524 4172 0.987 7396 0.534 7719 0.578 9866 0.843 2111 0.987 3 0.003 26394 0.995 4014 0.358 2611 0.759 3852 0.963 4 0.001 3525 0.978 2 0.001 24 3.937 12.479 16.416
21796 G21796T|(surface_glycoprotein:G234T(R78S)) 21 0.000 8650 0.321 7 0.000 14 0.000 4 0.000 3 0.000 3 0.000 4 0.000 2 0.000 6 0.000 3 0.000 1 0.000 1 0.001 10 0.000 2 0.000 1 0.001 10 0.002 9 0.002 19 0.005 1 0.000 20 0.323 0.009000000000000001 0.332
linkedubiq 21810 T21810C|(surface_glycoprotein:T248C(V83A)) 90752 0.995 14802 0.995 26788 0.996 21328 0.996 49747 0.980 7393 0.920 11672 0.995 11064 0.957 11307 0.987 12043 0.996 4177 0.989 13775 0.994 12899 0.965 9888 0.847 2113 0.986 26329 0.993 11162 0.995 2617 0.761 3875 0.965 4854 0.984 3551 0.981 21 3.942 16.335 20.277
ubiq 21987 G21987A|(surface_glycoprotein:G425A(G142D)) 176324 0.997 58064 0.999 27086 0.999 50208 0.999 62128 0.999 53722 0.999 25249 0.694 51084 0.998 9744 0.997 1808 0.999 36543 0.999 13753 0.999 14316 0.998 17981 0.998 54075 0.999 11769 0.999 9832 0.999 17501 0.999 23910 0.999 9924 0.999 12576 0.998 24746 0.999 7201 0.938 17493 0.998 8994 0.997 55709 0.999 26 3.935 21.661999999999995 25.596999999999994
ubiq 21991 TTA21991-21993del|(surface_glycoprotein:GTTTAT427-432GTTdel(VY143-144Vdel)) 176549 0.998 57899 0.996 27057 0.998 50144 0.998 61976 0.997 53677 0.998 25231 0.693 50959 0.996 9737 0.997 1702 0.940 36515 0.998 13740 0.998 14311 0.998 17976 0.998 54043 0.998 11759 0.998 9827 0.998 17482 0.998 23891 0.998 9916 0.999 12574 0.998 24743 0.999 7193 0.937 17488 0.998 8981 0.996 55649 0.998 26 3.929 21.589000000000002 25.518
22564 C22564A|(surface_glycoprotein:C1002A(N334K)) 7 0.001 3 0.002 5134 0.824 1 0.001 6 0.001 1 0.001 2 0.001 5 0.002 3 0.001 1 0.001 2 0.001 182 0.087 3 0.001 1 0.001 1 0.000 15 0.9129999999999999 0.012000000000000004 0.9249999999999999
22599 G22599A|(surface_glycoprotein:AGA1036-1038AAC(R346N)) 5187 0.822 195 0.090 2 0.9119999999999999 0 0.9119999999999999
22600 A22600C|(surface_glycoprotein:AGA1036-1038AAC(R346N)) 5187 0.820 195 0.090 2 0.9099999999999999 0 0.9099999999999999
22661 G22661T|(surface_glycoprotein:G1099T(V367F)) 1 0.000 1 0.001 5219 0.824 1 0.001 1 0.001 1 0.007 7 0.001 1 0.001 2 0.001 1 0.000 1 0.001 1 0.001 1 0.000 200 0.091 5 0.002 15 0.9169999999999999 0.015000000000000003 0.9319999999999999
22668 A22668C|(surface_glycoprotein:A1106C(Y369S)) 1 0.000 5206 0.822 2 0.001 1 0.000 2 0.001 1 0.000 1 0.001 201 0.091 8 0.9129999999999999 0.003 0.9159999999999999
22674 CCG22674-22676del|(surface_glycoprotein:TCCGCA1111-1116TCAdel(SA371-372Sdel)) 5203 0.822 202 0.092 2 0.9139999999999999 0 0.9139999999999999
22702 T22702C|(surface_glycoprotein:T1140C(Y380Y)) 2947 0.466 2 0.003 2 0.001 2 0.001 4 0.466 0.005 0.47100000000000003
22713 C22713A|(surface_glycoprotein:C1151A(P384H)) 3 0.000 4 0.002 5199 0.821 2 0.001 9 0.001 1 0.001 4 0.002 3 0.001 1 0.001 1 0.000 198 0.090 1 0.000 2 0.002 4 0.002 14 0.9139999999999999 0.010000000000000002 0.9239999999999999
linked 22770 G22770A|(surface_glycoprotein:G1208A(R403K)) 4682 0.730 1750 0.963 5034 0.814 764 0.400 1711 0.996 749 0.573 5003 0.721 1597 0.996 957 0.760 1228 0.466 2036 0.933 3035 0.856 664 0.998 1468 0.898 957 0.933 1451 0.578 651 0.827 1265 0.945 2040 0.973 2420 0.970 1002 0.950 2467 0.992 22 3.648 14.623999999999999 18.272
22785 G22785C|(surface_glycoprotein:G1223C(R408T)) 2 0.000 1558 0.062 5090 0.201 1 0.000 1 0.000 1 0.000 1 0.000 212 0.069 8 0.332 0.0 0.332
22799 G22799A|(surface_glycoprotein:G1237A(G413R)) 1 0.000 1554 0.062 11301 0.446 1 0.000 1 0.000 213 0.069 6 0.577 0.0 0.577
22805 A22805G|(surface_glycoprotein:ACT1243-1245GAA(T415E)) 1553 0.062 4162 0.171 152 0.050 3 0.28300000000000003 0 0.28300000000000003
22805 A22805G|(surface_glycoprotein:ACT1243-1245GAT(T415D)) 6218 0.255 1 0.255 0 0.255
22806 C22806A|(surface_glycoprotein:ACT1243-1245GAA(T415E)) 1553 0.062 4162 0.171 152 0.050 3 0.28300000000000003 0 0.28300000000000003
22806 C22806A|(surface_glycoprotein:ACT1243-1245GAT(T415D)) 6218 0.255 1 0.255 0 0.255
22807 T22807A|(surface_glycoprotein:ACT1243-1245GAA(T415E)) 1553 0.062 4162 0.171 152 0.050 3 0.28300000000000003 0 0.28300000000000003
22822 T22822G|(surface_glycoprotein:T1260G(D420E)) 3 0.000 1 0.000 6229 0.255 1 0.000 1 0.000 1 0.000 1 0.000 1 0.000 2 0.000 1 0.000 1 0.000 1 0.000 3 0.001 13 0.255 0.001 0.256
22824 A22824T|(surface_glycoprotein:A1262T(Y421F)) 5 0.000 1558 0.062 4136 0.170 1 0.000 7 0.000 4 0.000 6 0.000 1 0.000 1 0.000 1 0.000 5 0.000 9 0.000 1 0.000 1 0.000 2 0.000 1 0.000 2 0.000 161 0.053 3 0.000 19 0.28500000000000003 0.0 0.28500000000000003
22879 C22879A|(surface_glycoprotein:C1317A(N439K)) 20 0.000 1571 0.067 6272 0.325 4 0.000 4 0.000 4 0.000 6 0.000 8 0.000 4 0.000 1 0.001 1 0.000 4 0.000 4 0.000 1 0.000 5 0.000 3 0.001 1 0.000 23 0.022 5 0.002 19 0.41400000000000003 0.004 0.41800000000000004
22881 A22881C|(surface_glycoprotein:AAT1318-1320ACG(N440T)) 24 0.000 1574 0.067 6269 0.324 6 0.000 14 0.000 2 0.000 13 0.001 21 0.001 10 0.001 2 0.001 1 0.000 7 0.000 6 0.000 11 0.000 2 0.000 4 0.000 8 0.000 4 0.001 3 0.001 1 0.000 23 0.022 1 0.016 1 0.000 3 0.001 24 0.41300000000000003 0.023000000000000003 0.43600000000000005
22882 T22882G|(surface_glycoprotein:AAT1318-1320ACG(N440T)) 24 0.000 1574 0.067 6269 0.324 6 0.000 14 0.000 2 0.000 13 0.001 21 0.001 10 0.001 2 0.001 1 0.000 7 0.000 6 0.000 11 0.000 2 0.000 4 0.000 8 0.000 4 0.001 3 0.001 1 0.000 23 0.022 1 0.016 1 0.000 3 0.001 24 0.41300000000000003 0.023000000000000003 0.43600000000000005
22894 G22894C|(surface_glycoprotein:G1332C(K444N)) 11 0.000 1578 0.067 6276 0.325 6 0.000 8 0.000 2 0.000 2 0.000 7 0.000 9 0.001 2 0.001 1 0.000 4 0.000 3 0.000 11 0.000 2 0.000 1 0.000 4 0.000 28 0.001 2 0.000 23 0.022 2 0.000 5 0.002 22 0.41400000000000003 0.005 0.41900000000000004
22895 G22895A|(surface_glycoprotein:GTT1333-1335AAC(V445N)) 1570 0.067 6273 0.325 21 0.020 3 0.41200000000000003 0 0.41200000000000003
22896 RATG13 T22896A|(surface_glycoprotein:GTT1333-1335AAC(V445N)) 1570 0.067 6273 0.325 21 0.020 3 0.41200000000000003 0 0.41200000000000003
22897 T22897C|(surface_glycoprotein:GTT1333-1335AAC(V445N)) 1570 0.067 6273 0.325 21 0.020 3 0.41200000000000003 0 0.41200000000000003
22898 G22898A|(surface_glycoprotein:GGT1336-1338AAG(G446K)) 1570 0.067 6265 0.324 21 0.020 3 0.41100000000000003 0 0.41100000000000003
22899 G22899A|(surface_glycoprotein:GGT1336-1338AAG(G446K)) 1570 0.067 6265 0.324 21 0.020 3 0.41100000000000003 0 0.41100000000000003
22900 T22900G|(surface_glycoprotein:GGT1336-1338AAG(G446K)) 1570 0.067 6265 0.324 21 0.020 3 0.41100000000000003 0 0.41100000000000003
22907 T22907A|(surface_glycoprotein:TAT1345-1347AAG(Y449K)) 6272 0.325 1 0.000 2 0.325 0.0 0.325
22909 T22909G|(surface_glycoprotein:TAT1345-1347AAG(Y449K)) 6272 0.325 1 0.000 2 0.325 0.0 0.325
22912 T22912G|(surface_glycoprotein:T1350G(N450K)) 5 0.000 1573 0.067 6274 0.325 2 0.000 1 0.000 5 0.000 1 0.000 1 0.000 2 0.000 22 0.021 2 0.000 11 0.41300000000000003 0.0 0.41300000000000003
22916 C22916A|(surface_glycoprotein:CTG1354-1356AAG(L452K)) 1 0.000 1572 0.067 6272 0.325 3 0.392 0.0 0.392
22917 T22917A|(surface_glycoprotein:CTG1354-1356AAG(L452K)) 1 0.000 1572 0.067 6272 0.325 3 0.392 0.0 0.392
22920 A22920T|(surface_glycoprotein:A1358T(Y453F)) 11 0.000 1574 0.067 6279 0.325 2 0.000 3 0.000 3 0.000 3 0.000 3 0.000 4 0.000 1 0.000 3 0.000 2 0.000 1 0.000 2 0.000 1 0.000 4 0.000 2 0.000 1 0.000 1 0.000 22 0.021 1 0.000 21 0.41300000000000003 0.0 0.41300000000000003
linked 22927 G22927T|(surface_glycoprotein:G1365T(L455F)) 64938 0.534 10478 0.444 19289 0.998 8579 0.348 19173 0.576 3 0.000 6151 0.484 11 0.000 7364 0.462 2689 0.918 2 0.000 5761 0.379 7838 0.573 8513 0.234 4011 0.539 707 0.290 8589 0.711 24611 0.998 6301 0.796 1860 0.360 770 0.726 1029 0.162 22 2.458 8.074 10.532
22928 T22928G|(surface_glycoprotein:T1366G(F456V)) 2 0.000 1573 0.067 6265 0.324 2 0.000 1 0.000 3 0.000 1 0.000 7 0.001 5 0.000 3 0.000 2 0.000 3 0.001 1 0.000 22 0.021 14 0.41200000000000003 0.002 0.41400000000000003
22941 A22941G|(surface_glycoprotein:AAT1378-1380AGA(N460R)) 1574 0.067 6279 0.325 22 0.021 3 0.41300000000000003 0 0.41300000000000003
22942 T22942A|(surface_glycoprotein:AAT1378-1380AGA(N460R)) 1574 0.067 6279 0.325 22 0.021 3 0.41300000000000003 0 0.41300000000000003
22946 A22946C|(surface_glycoprotein:A1384C(K462Q)) 9 0.000 1577 0.067 6274 0.325 4 0.000 5 0.000 1 0.000 4 0.000 4 0.000 4 0.000 2 0.000 2 0.000 7 0.000 1 0.000 1 0.000 21 0.020 2 0.000 16 0.41200000000000003 0.0 0.41200000000000003
linkedubiq 22992 G22992A|(surface_glycoprotein:G1430A(S477N)) 121355 0.999 23576 0.999 19303 0.999 24643 0.999 33257 0.999 8946 0.999 12683 0.999 30900 0.998 15887 0.998 2926 0.999 1782 0.998 4948 0.999 15190 0.999 13649 0.998 36243 0.998 7422 0.999 2336 0.957 12071 0.999 24606 0.998 7890 0.998 5573 0.998 5164 0.999 1048 0.994 61 0.984 6318 0.999 3090 0.999 26 3.9490000000000003 21.955 25.904
linkedubiq 22995 RATG13,Delta C22995A|(surface_glycoprotein:C1433A(T478K)) 121285 0.998 21979 0.931 19282 0.998 19412 0.787 33138 0.995 8906 0.995 6508 0.512 30853 0.997 15886 0.998 2918 0.997 1780 0.997 4941 0.997 9822 0.646 13618 0.996 36232 0.998 7416 0.998 2436 0.998 12062 0.998 24594 0.998 7043 0.891 5563 0.997 5162 0.999 1025 0.972 62 1.000 6304 0.997 3086 0.997 26 3.899 20.788 24.687
23005 T23005C|(surface_glycoprotein:T1443C(N481N)) 6 0.000 1558 0.066 6219 0.323 1 0.000 2 0.000 3 0.000 3 0.000 2 0.000 2 0.001 3 0.000 20 0.001 1 0.000 3 0.000 3 0.000 2 0.000 2 0.000 3 0.000 5 0.002 18 0.389 0.004 0.393
23006 G23006A|(surface_glycoprotein:GGT1444-1446ACT(G482T)) 1560 0.066 6216 0.323 2 0.389 0 0.389
23007 G23007C|(surface_glycoprotein:GGT1444-1446ACT(G482T)) 1560 0.066 6216 0.323 2 0.389 0 0.389
23011 TGA23011-23013del|(surface_glycoprotein:GTTGAA1447-1452GTAdel(VE483-484Vdel)) 1559 0.067 6217 0.324 2 0.391 0 0.391
23018 RATG13 T23018C|(surface_glycoprotein:TTT1456-1458CAT(F486H)) 6 0.000 2 0.000 6216 0.324 1 0.000 1 0.000 1 0.000 1 0.000 1 0.000 1 0.000 4 0.001 1 0.000 11 0.324 0.001 0.325
23019 T23019A|(surface_glycoprotein:TTT1456-1458CAT(F486H)) 6 0.000 2 0.000 6216 0.324 1 0.000 1 0.000 1 0.000 1 0.000 1 0.000 1 0.000 4 0.001 1 0.000 11 0.324 0.001 0.325
23030 T23030C|(surface_glycoprotein:TTT1468-1470CAT(F490H)) 1559 0.067 6211 0.324 20 0.020 3 0.41100000000000003 0 0.41100000000000003
23031 RATG13 T23031A|(surface_glycoprotein:TTT1468-1470CAT(F490H)) 1559 0.067 6211 0.324 20 0.020 3 0.41100000000000003 0 0.41100000000000003
23040 A23040T|(surface_glycoprotein:A1478T(Q493L)) 24 0.000 1559 0.067 6213 0.324 3 0.000 7 0.000 1 0.000 2 0.000 3 0.000 3 0.000 1 0.001 10 0.000 1 0.000 1 0.000 3 0.000 2 0.000 3 0.001 1 0.000 20 0.020 2 0.000 1 0.000 20 0.41100000000000003 0.002 0.41300000000000003
23042 T23042A|(surface_glycoprotein:T1480A(S494T)) 1558 0.067 6207 0.324 1 0.000 1 0.000 1 0.000 20 0.020 1 0.000 7 0.41100000000000003 0.0 0.41100000000000003
23049 G23049A|(surface_glycoprotein:G1487A(G496D)) 3 0.000 6207 0.324 3 0.000 2 0.000 1 0.000 1 0.000 1 0.000 1 0.000 2 0.000 9 0.324 0.0 0.324
23058 C23058T|(surface_glycoprotein:C1496T(P499L)) 1 0.000 6207 0.324 2 0.324 0.0 0.324
23063 A23063T|(surface_glycoprotein:AAT1501-1503TCT(N501S)) 18 0.000 1563 0.067 6210 0.324 4 0.000 2 0.000 2 0.000 1 0.000 9 0.000 2 0.000 1 0.000 1 0.000 3 0.000 9 0.000 1 0.000 5 0.000 9 0.000 1 0.000 5 0.001 5 0.002 19 0.391 0.003 0.394
23064 A23064C|(surface_glycoprotein:AAT1501-1503TCT(N501S)) 18 0.000 1563 0.067 6210 0.324 4 0.000 2 0.000 2 0.000 1 0.000 9 0.000 2 0.000 1 0.000 1 0.000 3 0.000 9 0.000 1 0.000 5 0.000 9 0.000 1 0.000 5 0.001 5 0.002 19 0.391 0.003 0.394
linkedubiq 23075 RATG13 T23075C|(surface_glycoprotein:T1513C(Y505H)) 120392 0.999 23349 0.999 19146 0.999 24434 0.999 32914 0.999 8801 0.999 12464 0.999 30535 0.999 15725 0.999 2893 1.000 1766 1.000 4741 0.999 14578 0.999 13425 0.999 35894 0.999 7359 0.999 2413 1.000 11844 0.999 24267 0.999 7803 0.999 5475 0.999 5121 0.999 1005 1.000 59 0.983 6092 0.996 3021 0.999 26 3.998 21.961 25.959
23084 T23084C|(surface_glycoprotein:T1522C(Y508H)) 4 0.000 1558 0.067 6203 0.324 5 0.000 1 0.000 1 0.000 1 0.000 1 0.000 2 0.000 2 0.000 20 0.020 1 0.000 1 0.000 13 0.41100000000000003 0.0 0.41100000000000003
23120 G23120T|(surface_glycoprotein:G1558T(A520S)) 17 0.000 17713 0.339 4 0.000 5 0.000 2 0.000 2 0.000 3 0.000 6 0.000 1 0.000 2 0.000 5 0.000 12 0.000 2 0.000 3 0.000 5 0.000 4 0.000 3 0.000 2 0.000 3 0.000 5 0.000 2 0.000 4 0.000 22 0.339 0.0 0.339
linked 23222 G23222A|(surface_glycoprotein:G1660A(E554K)) 21182 0.164 48735 0.920 15810 0.328 1 0.000 13939 0.188 15276 0.345 1 0.000 11156 0.181 969 0.589 14015 0.543 4521 0.250 5916 0.154 24552 0.767 53971 0.812 17631 0.589 20610 0.835 4920 0.345 3213 0.070 14140 0.470 14714 0.808 19286 0.913 25437 0.874 22939 0.709 12874 0.764 45504 0.997 25 2.957 9.658000000000001 12.615000000000002
linked 23271 C23271T|(surface_glycoprotein:C1709T(A570V)) 21255 0.123 48775 0.697 15845 0.247 53 0.001 16175 0.190 15253 0.332 1 0.000 11210 0.158 8248 0.730 14050 0.521 5473 0.238 5780 0.130 28564 0.772 56394 0.801 19943 0.569 27357 0.869 7992 0.393 4 0.000 21218 0.485 18550 0.812 21284 0.922 34768 0.872 25646 0.730 17008 0.715 46776 0.996 25 2.685 9.618000000000004 12.303000000000004
23275 C23275A|(surface_glycoprotein:C1713A(D571E)) 48 0.000 9192 0.131 6264 0.098 7 0.000 20 0.000 10 0.000 21 0.000 24 0.000 1 0.000 3 0.000 2 0.000 8 0.000 9 0.000 13 0.000 19 0.000 11 0.000 3 0.000 3 0.000 11 0.000 8 0.000 5 0.000 8 0.000 885 0.022 18 0.001 2 0.000 25 0.001 26 0.251 0.002 0.253
23277 C23277A|(surface_glycoprotein:C1715A(T572N)) 32 0.000 9192 0.131 6258 0.098 6 0.000 19 0.000 15 0.000 13 0.000 13 0.000 6 0.001 1 0.000 11 0.000 7 0.000 11 0.000 10 0.000 10 0.000 7 0.000 13 0.000 8 0.000 11 0.000 8 0.000 3 0.000 4 0.000 880 0.022 11 0.000 3 0.000 18 0.000 26 0.251 0.001 0.252
23300 C23300A|(surface_glycoprotein:C1738A(Q580K)) 32 0.000 9201 0.131 6272 0.098 9 0.000 17 0.000 9 0.000 18 0.000 19 0.000 3 0.000 1 0.000 5 0.000 12 0.001 15 0.000 8 0.000 11 0.000 6 0.000 5 0.000 4 0.000 12 0.000 5 0.000 6 0.000 2 0.000 883 0.022 6 0.000 3 0.000 18 0.000 26 0.251 0.001 0.252
23311 G23311C|(surface_glycoprotein:G1749C(E583D)) 50 0.000 9191 0.131 6282 0.098 15 0.000 25 0.000 19 0.000 24 0.000 30 0.000 4 0.000 4 0.000 12 0.000 9 0.000 25 0.001 28 0.001 27 0.000 11 0.000 15 0.000 11 0.001 18 0.000 25 0.001 11 0.000 890 0.022 16 0.000 15 0.001 23 0.000 25 0.251 0.005 0.256
linkedubiq 23403 Delta A23403G|(surface_glycoprotein:A1841G(D614G)) 172643 0.998 69632 0.996 63844 0.998 41464 0.999 84414 0.999 45106 0.998 57965 0.999 70132 0.998 11151 0.996 11467 0.997 26752 0.998 22543 0.998 43247 0.998 36508 0.998 69905 0.999 34810 0.999 31301 0.998 20277 0.997 57435 0.998 43552 0.998 22703 0.998 22977 0.998 38980 0.990 33771 0.988 23330 0.991 46164 0.998 26 3.9819999999999998 21.939999999999994 25.921999999999993
23405 G23405A|(surface_glycoprotein:G1843A(V615I)) 6 0.000 9374 0.134 6346 0.099 1 0.000 1 0.000 1 0.000 1 0.000 1 0.000 1 0.000 1 0.000 1 0.000 2 0.000 2 0.000 1 0.000 1 0.000 933 0.024 1 0.000 1 0.000 18 0.257 0.0 0.257
linked 23423 C23423T|(surface_glycoprotein:C1861T(P621S)) 21059 0.122 48262 0.690 15677 0.245 59 0.001 15971 0.189 14983 0.332 11026 0.157 8401 0.730 13954 0.521 5482 0.243 5725 0.132 28330 0.775 56180 0.802 19896 0.571 27353 0.872 8032 0.395 5 0.000 21524 0.493 18493 0.813 21217 0.922 33701 0.856 24421 0.714 16465 0.699 46222 0.999 24 2.663 9.61 12.273
23427 T23427G|(surface_glycoprotein:T1865G(V622G)) 24 0.000 9341 0.134 6355 0.099 16 0.000 1 0.000 1 0.000 12 0.000 7 0.001 6 0.001 2 0.000 2 0.000 3 0.000 9 0.000 4 0.000 1 0.000 5 0.000 3 0.000 3 0.000 9 0.000 4 0.000 3 0.000 943 0.024 4 0.000 3 0.000 1 0.000 25 0.257 0.002 0.259
23472 CTA23472-23474del|(surface_glycoprotein:TCTACA1909-1914TCAdel(ST637-638Sdel)) 5529 0.310 5381 0.332 753 0.068 3 0.71 0 0.71
23480 T23480C|(surface_glycoprotein:T1918C(S640P)) 7 0.000 5539 0.311 5395 0.333 2 0.000 1 0.000 1 0.000 1 0.000 1 0.000 6 0.000 1 0.000 756 0.068 11 0.712 0.0 0.712
linked 23487 T23487G|(surface_glycoprotein:T1925G(V642G)) 14 0.000 5496 0.309 5398 0.333 5 0.000 6 0.001 3595 0.369 4 0.001 11 0.001 2 0.000 3 0.000 1 0.000 2 0.000 2 0.000 10 0.001 8 0.001 13 0.001 13 0.001 3 0.001 1 0.000 765 0.070 1 0.000 7 0.001 1 0.001 23 0.7130000000000001 0.378 1.0910000000000002
23516 G23516-23516del|(surface_glycoprotein:1954-1954del(652fs)) 3867 0.227 2 0.000 2 0.227 0.0 0.227
linked 23525 C23525T|(surface_glycoprotein:C1963T(H655Y)) 44583 0.999 12025 0.706 10609 0.665 3769 0.999 11151 0.999 1704 0.998 5092 0.998 9561 0.998 7259 0.999 9667 0.999 1232 0.997 4989 0.999 6081 0.999 5141 0.998 4173 0.999 5147 0.999 6791 1.000 6288 0.995 12509 0.995 13700 0.999 4929 0.999 2109 0.999 9742 0.924 2547 0.993 6869 0.992 1351 0.998 26 3.295 21.95 25.244999999999997
23545 G23545T|(surface_glycoprotein:G1983T(E661D)) 4 0.000 6 0.000 3423 0.214 1 0.000 1 0.001 2 0.000 2 0.000 2 0.000 1 0.000 3 0.001 1 0.000 2 0.000 1 0.000 13 0.214 0.002 0.216
23566 A23566C|(surface_glycoprotein:A2004C(A668A)) 4968 0.292 5334 0.335 1 0.000 1 0.000 1 0.000 1 0.001 1 0.000 2 0.000 1 0.000 699 0.067 1 0.000 11 0.694 0.001 0.695
23585 C23585T|(surface_glycoprotein:CAG2023-2025TGG(Q675W)) 4851 0.285 1 0.285 0 0.285
23586 A23586G|(surface_glycoprotein:A2024G(Q675R)) 3 0.000 5 0.000 5269 0.337 1 0.000 2 0.000 3 0.000 1 0.000 1 0.000 1 0.000 2 0.000 2 0.000 678 0.069 2 0.000 13 0.406 0.0 0.406
23586 A23586G|(surface_glycoprotein:CAG2023-2025TGG(Q675W)) 4851 0.285 1 0.285 0 0.285
23589 C23589A|(surface_glycoprotein:C2027A(T676N)) 1 0.000 6 0.000 5263 0.337 1 0.000 1 0.000 1 0.000 678 0.069 2 0.001 3 0.000 9 0.406 0.001 0.40700000000000003
linked 23599 T23599G|(surface_glycoprotein:T2037G(N679K)) 187751 1.000 9 0.002 27852 0.842 25780 1.000 66557 1.000 47847 1.000 39202 0.999 56968 1.000 8108 0.999 7989 0.999 32808 1.000 13453 1.000 19585 0.999 20484 1.000 59717 1.000 25793 1.000 18303 1.000 22670 1.000 5532 0.999 16122 1.000 15336 1.000 25492 1.000 13265 0.952 9385 0.999 11509 1.000 61669 0.999 26 2.796 21.993 24.788999999999998
23603 C23603T|(surface_glycoprotein:C2041T(P681S)) 4 0.235 1 0.235 0 0.235
linked 23604 C23604A|(surface_glycoprotein:C2042A(P681H)) 141015 0.746 7 0.389 16890 0.603 17798 0.685 54988 0.819 42768 0.886 15677 0.397 46422 0.808 8143 1.000 5804 0.725 11277 0.340 13605 1.000 15418 0.781 3685 0.178 23112 0.380 5215 0.200 1024 0.055 3697 0.162 5566 0.999 6978 0.429 2 0.000 2502 0.097 962 0.072 6310 0.667 1 0.000 4 0.000 26 1.119 11.299 12.418
23639 A23639G|(surface_glycoprotein:A2077G(I693V)) 20 0.000 5 0.455 2 0.000 5 0.000 2 0.000 1 0.000 7 0.000 1 0.000 2 0.000 1 0.000 4 0.000 2 0.000 1 0.000 2 0.000 1 0.000 2 0.000 4 0.000 17 0.455 0.0 0.455
23666 G23666C|(surface_glycoprotein:G2104C(E702Q)) 494 0.003 14 1.000 202 0.007 202 0.008 8 0.000 2 0.000 3 0.000 18 0.000 3 0.000 2 0.000 5 0.000 6 0.000 3 0.000 5 0.000 2 0.000 2 0.000 3 0.000 3 0.000 2 0.000 1 0.000 5 0.000 7 0.000 22 1.007 0.011 1.0179999999999998
23765 T23765G|(surface_glycoprotein:T2203G(S735A)) 24 0.000 288 0.976 74 0.002 58 0.002 12 0.000 12 0.000 9 0.000 29 0.000 3 0.000 5 0.000 7 0.000 1 0.000 1 0.000 7 0.000 5 0.000 2 0.000 3 0.000 1 0.000 2 0.000 3 0.000 1 0.000 1 0.000 3 0.000 12 0.000 24 0.978 0.002 0.98
23781 T23781C|(surface_glycoprotein:T2219C(M740T)) 8 0.000 4919 0.163 3 0.000 6 0.000 1 0.000 4 0.000 1 0.000 2 0.000 1 0.000 1 0.000 9 0.000 2 0.000 1 0.000 1 0.000 1 0.000 2 0.000 3 0.000 17 0.163 0.0 0.163
23830 T23830C|(surface_glycoprotein:T2268C(Y756Y)) 7 0.000 241 0.817 2 0.000 3 0.000 3 0.000 1 0.000 2 0.000 1 0.000 1 0.000 4 0.000 3 0.000 4 0.000 2 0.000 1 0.000 2 0.000 1 0.000 4 0.000 3 0.000 18 0.817 0.0 0.817
linked 23854 C23854A|(surface_glycoprotein:C2292A(N764K)) 191861 0.998 3 0.009 28972 0.887 26828 0.998 67750 0.999 48301 0.999 39796 0.999 58357 0.998 8226 0.997 8085 0.997 33210 0.998 13728 0.997 19973 0.999 21078 0.998 61210 0.998 26378 0.999 18872 0.998 23099 0.998 5666 0.999 17320 0.998 15982 0.996 26079 0.998 13803 0.969 9355 0.968 11819 0.968 62462 0.997 26 2.863 21.896 24.759
23939 C23939T|(surface_glycoprotein:C2377T(P793S)) 3 0.000 1 0.000 3701 0.368 1 0.000 2 0.000 2 0.000 1 0.000 2 0.000 2 0.000 1 0.000 10 0.368 0.0 0.368
linked 23948 G23948T|(surface_glycoprotein:G2386T(D796Y)) 101949 0.998 27013 0.998 6330 0.630 15156 0.998 18643 0.998 12250 0.997 19141 0.997 13439 0.998 7045 0.997 15608 0.999 19410 0.997 3113 0.997 11909 0.998 30182 0.997 7539 0.997 6563 0.998 21801 0.997 10 1.000 4893 0.998 16862 0.996 13486 0.997 4017 0.996 11855 0.997 3831 0.998 20841 0.995 25 3.622 20.946 24.568
24016 T24016C|(surface_glycoprotein:T2454C(I818I)) 9 0.000 13308 0.484 4 0.000 2 0.000 3 0.000 2 0.000 2 0.000 2 0.000 2 0.000 2 0.000 1 0.000 1 0.000 1 0.000 2 0.000 14 0.484 0.0 0.484
24044 C24044T|(surface_glycoprotein:C2482T(L828F)) 3 0.000 2 0.000 4682 0.420 1 0.000 2 0.000 1 0.000 2 0.000 1 0.000 2 0.000 3 0.001 3 0.000 11 0.42 0.001 0.421
24055 T24055G|(surface_glycoprotein:T2493G(A831A)) 10 0.000 3 0.000 4672 0.419 4 0.000 3 0.000 3 0.000 6 0.000 4 0.000 4 0.000 3 0.000 1 0.000 2 0.000 2 0.000 1 0.000 5 0.000 3 0.001 6 0.000 2 0.000 2 0.000 1 0.000 2 0.000 3 0.000 22 0.419 0.001 0.42
24139 TG24139-24140del|(surface_glycoprotein:2577-2578del(859fs)) 3695 0.367 1 0.367 0 0.367
24346 T24346C|(surface_glycoprotein:T2784C(N928N)) 595 0.698 1 0.698 0 0.698
24380 T24380A|(surface_glycoprotein:T2818A(S940T)) 2 0.000 594 0.696 1 0.004 1 0.001 44 0.115 1 0.001 1 0.000 7 0.8109999999999999 0.006 0.817
24613 A24613G|(surface_glycoprotein:A3051G(E1017E)) 18 0.000 3 0.000 11156 0.426 2 0.000 7 0.000 3 0.000 5 0.000 2 0.000 2 0.000 2 0.000 4 0.000 2 0.000 2 0.000 1 0.000 2 0.000 1 0.000 1 0.000 1 0.000 2 0.000 3 0.000 2 0.000 21 0.426 0.0 0.426
24694 A24694G|(surface_glycoprotein:A3132G(G1044G)) 14 0.000 1 0.000 5796 0.222 1 0.000 12 0.000 5 0.000 5 0.000 3 0.000 1 0.000 1 0.000 4 0.000 2 0.000 2 0.000 1 0.000 11 0.000 2 0.000 5 0.000 2 0.000 4 0.000 6 0.000 3 0.000 2 0.000 22 0.222 0.0 0.222
24700 C24700T|(surface_glycoprotein:C3138T(G1046G)) 9 0.000 2 0.000 11154 0.427 2 0.000 2 0.000 1 0.000 4 0.000 1 0.000 1 0.000 4 0.000 4 0.000 2 0.000 2 0.000 6 0.000 1 0.000 4 0.000 3 0.000 17 0.427 0.0 0.427
24763 T24763C|(surface_glycoprotein:T3201C(Y1067Y)) 15 0.000 11021 0.426 4 0.000 7 0.000 2 0.001 6 0.000 2 0.000 2 0.000 3 0.000 2 0.000 7 0.000 9 0.000 1 0.000 5 0.000 2 0.000 2 0.000 3 0.000 1 0.000 1 0.000 3 0.000 20 0.426 0.001 0.427
24936 A24936C|(surface_glycoprotein:A3374C(N1125T)) 4 0.000 2866 0.141 6653 0.260 2 0.000 2 0.000 2 0.000 2 0.000 1 0.000 1 0.000 322 0.030 1 0.000 11 0.43100000000000005 0.0 0.43100000000000005
24997 A24997G|(surface_glycoprotein:A3435G(L1145L)) 6 0.000 2856 0.141 1 0.000 2 0.000 1 0.000 1 0.000 2 0.000 1 0.000 1 0.000 2 0.000 1 0.000 3 0.000 1 0.000 324 0.030 1 0.000 1 0.000 16 0.17099999999999999 0.0 0.17099999999999999
25011 A25011C|(surface_glycoprotein:A3449C(E1150A)) 20 0.000 2860 0.141 6624 0.259 14 0.000 2 0.000 5 0.000 10 0.001 1 0.000 2 0.000 1 0.000 3 0.001 4 0.000 4 0.001 8 0.000 6 0.001 9 0.001 1 0.000 9 0.000 4 0.000 2 0.000 1 0.000 326 0.031 3 0.000 2 0.000 5 0.001 25 0.43200000000000005 0.005 0.43700000000000006
25019 G25019T|(surface_glycoprotein:GAT3457-3459TCT(D1153S)) 1 0.000 2821 0.140 6557 0.257 311 0.030 4 0.42700000000000005 0.0 0.42700000000000005
25020 A25020C|(surface_glycoprotein:GAT3457-3459TCT(D1153S)) 1 0.000 2821 0.140 6557 0.258 311 0.030 4 0.42800000000000005 0.0 0.42800000000000005
25037 C25037T|(surface_glycoprotein:C3475T(H1159Y)) 3 0.000 2814 0.141 6561 0.260 1 0.000 1 0.000 1 0.000 1 0.000 1 0.000 312 0.031 9 0.43200000000000005 0.0 0.43200000000000005
25049 G25049A|(surface_glycoprotein:GAT3487-3489AAA(D1163K)) 2810 0.141 6550 0.260 303 0.030 3 0.43100000000000005 0 0.43100000000000005
25051 T25051A|(surface_glycoprotein:GAT3487-3489AAA(D1163K)) 2810 0.141 6550 0.260 303 0.030 3 0.43100000000000005 0 0.43100000000000005
25052 G25052A|(surface_glycoprotein:G3490A(V1164I)) 2 0.000 2803 0.140 6533 0.259 2 0.000 1 0.000 298 0.029 6 0.42800000000000005 0.0 0.42800000000000005
25100 C25100A|(surface_glycoprotein:C3538A(Q1180K)) 8 0.000 11985 0.551 6550 0.246 1 0.000 3 0.000 3 0.000 2 0.000 6 0.000 4 0.000 3 0.001 3 0.000 1 0.000 2 0.000 2 0.000 10 0.000 1 0.000 1 0.000 2 0.000 1 0.000 1 0.000 1 0.000 316 0.027 1 0.000 4 0.000 24 0.8240000000000001 0.001 0.8250000000000001
25146 A25146G|(surface_glycoprotein:A3584G(E1195G)) 1 0.000 891 0.464 1 0.000 3 0.001 1 0.001 1 0.000 6 0.464 0.002 0.466
25163 C25163A|(surface_glycoprotein:C3601A(Q1201K)) 4 0.000 894 0.466 2 0.001 3 0.000 2 0.000 3 0.001 5 0.001 4 0.000 1 0.001 2 0.000 2 0.002 1 0.000 3 0.001 1 0.001 4 0.001 1 0.002 16 0.468 0.009000000000000001 0.47700000000000004
25169 C25169T|(surface_glycoprotein:C3607T(L1203F)) 894 0.466 1 0.466 0 0.466
25254 C25254T|(surface_glycoprotein:C3692T(T1231I)) 926 0.466 1 0.000 1 0.000 3 0.466 0.0 0.466
25347 A25347G|(surface_glycoprotein:A3785G(E1262G)) 905 0.468 1 0.000 1 0.000 1 0.000 1 0.000 1 0.001 3 0.001 1 0.000 8 0.468 0.002 0.47000000000000003
25456 G25456A|(ORF3a_protein:G64A(D22N)) 30 0.000 11897 0.270 3 0.000 3 0.000 1 0.000 1 0.000 1 0.000 87 0.006 1 0.000 3 0.000 2 0.000 1 0.000 1 0.000 1 0.000 1 0.000 15 0.27 0.006 0.276
25492 A25492G|(ORF3a_protein:ACG100-102GTG(T34V)) 11888 0.270 1 0.27 0 0.27
25493 C25493T|(ORF3a_protein:ACG100-102GTG(T34V)) 11888 0.270 1 0.27 0 0.27
25522 G25522A|(ORF3a_protein:GGA130-132ATA(G44I)) 11995 0.270 1 0.27 0 0.27
25523 G25523T|(ORF3a_protein:GGA130-132ATA(G44I)) 11995 0.270 1 0.27 0 0.27
25525 T25525C|(ORF3a_protein:T133C(W45R)) 2 0.000 2 0.000 11970 0.269 2 0.000 1 0.000 2 0.000 1 0.000 1 0.000 1 0.000 1 0.000 2 0.000 1 0.000 4 0.000 7 0.000 1 0.000 1 0.000 3 0.000 1 0.000 2 0.000 3 0.000 20 0.269 0.0 0.269
25563 G25563T|(ORF3a_protein:G171T(Q57H)) 24 0.000 8 0.000 12002 0.270 2 0.000 15 0.000 27 0.000 3 0.000 29 0.000 9 0.001 2 0.000 10 0.000 9 0.000 2 0.000 7 0.000 29 0.000 7 0.000 8 0.000 6 0.000 21 0.000 1 0.000 4 0.000 3 0.000 7 0.000 4 0.000 2 0.000 42 0.001 26 0.27 0.002 0.272
25674 T25674A|(ORF3a_protein:T282A(L94L)) 2 0.000 11862 0.270 1 0.000 3 0.000 1 0.000 1 0.000 2 0.000 1 0.000 3 0.000 2 0.000 2 0.000 12 0.000 12 0.27 0.0 0.27
25681 G25681T|(ORF3a_protein:G289T(V97F)) 42 0.000 17 0.001 11655 0.265 5 0.001 26 0.000 23 0.000 17 0.001 59 0.001 2 0.000 27 0.001 6 0.000 4 0.000 20 0.001 47 0.001 7 0.000 8 0.000 5 0.000 31 0.000 5 0.000 10 0.000 3 0.000 8 0.000 5 0.000 9 0.001 13 0.000 25 0.266 0.007 0.273
25936 C25936G|(ORF3a_protein:C544G(H182D)) 1 0.000 249 0.297 1 0.001 1 0.001 1 0.002 5 0.298 0.003 0.301
26010 C26010T|(ORF3a_protein:C618T(Y206Y)) 246 0.293 2 0.001 2 0.293 0.001 0.294
ubiq 26060 C26060T|(ORF3a_protein:C668T(T223I)) 25119 0.998 5288 0.998 10044 0.998 2600 0.999 12315 0.998 3110 0.998 5188 0.999 18227 0.999 894 0.999 268 1.000 19288 0.999 5174 0.999 3215 0.999 15767 0.998 31009 0.999 1 1.000 7418 0.998 3383 0.997 5715 0.998 9441 0.999 8782 0.999 9010 0.998 4969 0.919 5812 0.999 6793 0.999 26520 0.999 26 3.9130000000000003 21.971999999999998 25.884999999999998
ubiq 26270 C26270T|(envelope_protein:C26T(T9I)) 25630 0.996 5378 0.995 10256 0.995 2658 0.997 12665 0.994 3223 0.995 5330 0.992 18741 0.992 919 0.995 275 0.993 19786 0.995 5458 0.993 3396 0.995 16444 0.992 31870 0.994 1 1.000 7628 0.994 3466 0.993 5831 0.993 9667 0.995 9081 0.992 9214 0.998 5704 0.993 6140 0.991 7171 0.992 27382 0.991 26 3.9770000000000003 21.868 25.845
26479 T26479C 2 0.000 4 0.000 2964 0.193 1 0.000 2 0.000 1 0.000 1 0.000 1 0.000 1 0.000 2 0.000 1 0.000 2 0.000 12 0.193 0.0 0.193
26483 TAT26483-26485del 7279 0.351 1 0.351 0 0.351
26537 C26537T|(membrane_glycoprotein:C15T(N5N)) 2 0.000 7505 0.354 2992 0.192 3 0.000 3 0.000 2 0.000 131 0.022 7 0.568 0.0 0.568
26538 G26538A|(membrane_glycoprotein:G16A(G6S)) 4 0.000 7542 0.356 2986 0.192 2 0.000 3 0.000 1 0.000 2 0.000 1 0.000 1 0.000 131 0.022 1 0.000 11 0.57 0.0 0.57
linked 26705 T26705-26705del|(membrane_glycoprotein:183-183del(61fs)) 2 0.000 7100 0.146 1 0.000 4 0.000 1 0.000 1 0.000 1 0.000 1 0.000 2 0.000 1 0.000 1 0.000 1 0.000 12 0.146 0.0 0.146
linked 26709 G26709A|(membrane_glycoprotein:G187A(A63T)) 274789 0.998 41341 0.852 44671 0.938 46482 0.998 121968 0.998 57649 0.997 52354 0.997 76655 0.998 21630 0.998 6735 0.997 79440 0.997 44810 0.998 26590 0.998 54490 0.997 147490 0.997 32716 0.998 26713 0.998 27663 0.999 49193 0.998 29912 0.998 34309 0.997 30650 0.991 12837 0.972 31310 0.996 18118 0.996 63874 0.996 26 3.76 21.937 25.697000000000003
26837 T26837C|(membrane_glycoprotein:T315C(R105R)) 12 0.000 2 0.000 3 0.000 6 0.000 9 0.000 2 0.000 2 0.000 4 0.000 2 0.000 2 0.000 1 0.000 3 0.000 5 0.000 4747 0.255 1 0.000 2 0.000 1 0.000 4 0.000 3 0.000 19 0.255 0.0 0.255
linkedubiq 26858 C26858T|(membrane_glycoprotein:C336T(F112F)) 232049 0.999 28455 0.999 32961 0.999 34707 0.999 94898 0.998 53941 0.998 53170 0.998 51986 0.996 4282 0.997 1140 0.997 63218 0.999 37577 0.998 24805 0.999 44838 0.998 124126 0.999 14341 0.999 18548 0.999 6961 0.994 31954 0.994 24659 0.998 28091 0.999 24525 0.999 7848 0.999 23204 0.999 13443 0.998 55362 0.998 26 3.996 21.953 25.948999999999998
27162 A27162G|(membrane_glycoprotein:A640G(S214G)) 3 0.000 1501 0.245 2262 0.235 4 0.000 1 0.000 1 0.000 1 0.000 3 0.000 1 0.000 553 0.047 1 0.000 11 0.5269999999999999 0.0 0.5269999999999999
ubiq 27259 A27259C|(ORF6_protein:A58C(R20R)) 91027 0.998 27240 0.948 36900 0.942 15113 0.999 36081 0.998 34417 0.999 19641 0.999 18235 0.998 18103 0.997 14370 0.997 18719 0.998 16530 0.997 28992 0.998 15465 0.996 15996 0.998 16292 0.996 14172 0.997 22873 0.999 40121 0.998 15611 0.998 10310 0.996 5819 0.994 14860 0.958 19370 0.995 7917 0.971 8125 0.997 26 3.845 21.915999999999997 25.760999999999996
ubiq 27382 G27382C|(ORF6_protein:GAT181-183CTC(D61L)) 56842 0.998 23104 0.998 30521 0.998 12688 0.998 9364 0.998 34949 0.997 19194 0.997 11143 0.998 10930 0.997 6430 0.997 7435 0.998 9942 0.983 23334 0.984 4776 0.999 5587 0.998 5856 0.997 8047 0.998 17602 0.998 21181 0.998 6773 0.998 3520 0.997 3102 1.000 4106 0.999 9682 0.998 4749 0.997 5797 0.996 26 3.9930000000000003 21.920999999999996 25.913999999999994
ubiq 27383 A27383T|(ORF6_protein:GAT181-183CTC(D61L)) 56842 0.998 23104 0.998 30521 0.998 12688 0.998 9364 0.998 34949 0.997 19194 0.997 11143 0.998 10930 0.997 6430 0.997 7435 0.998 9942 0.983 23334 0.984 4776 0.999 5587 0.998 5856 0.997 8047 0.998 17602 0.998 21181 0.998 6773 0.998 3520 0.997 3102 1.000 4106 0.999 9682 0.998 4749 0.997 5797 0.996 26 3.9930000000000003 21.920999999999996 25.913999999999994
ubiq 27384 T27384C|(ORF6_protein:GAT181-183CTC(D61L)) 56842 0.998 23104 0.998 30521 0.998 12688 0.998 9364 0.998 34949 0.997 19194 0.997 11143 0.998 10930 0.997 6430 0.997 7435 0.999 9942 0.983 23334 0.984 4776 0.999 5587 0.998 5856 0.997 8047 0.998 17602 0.998 21181 0.998 6773 0.998 3520 0.997 3102 1.000 4106 0.999 9682 0.998 4749 0.997 5797 0.996 26 3.9930000000000003 21.921999999999997 25.915
27684 C27684T|(ORF7a_protein:C291T(Y97Y)) 1 0.000 7796 0.284 1 0.000 1 0.000 2 0.000 3 0.000 3 0.000 2 0.000 1 0.000 9 0.284 0.0 0.284
linked 27807 C27807T|(ORF7b:C52T(L18L)) 113433 0.998 15960 0.999 19430 0.715 34119 0.999 72589 0.999 13388 0.998 5389 0.998 54002 0.999 54289 0.999 30010 0.999 45947 0.999 31401 0.999 21285 0.999 39055 0.999 118925 0.999 34555 0.999 26948 0.999 57495 0.999 95760 0.999 19563 0.999 29123 0.999 39045 0.999 19558 0.970 14103 0.998 9340 0.998 72031 0.997 26 3.683 21.971 25.654
linked 27915 G27915T|(ORF8_protein:G22T(G8*)) 236033 0.938 3266 0.113 36271 0.660 38594 0.860 78394 0.844 14629 0.483 8459 0.547 87777 0.859 39967 0.719 19062 0.610 16758 0.302 28654 0.890 19921 0.824 21640 0.417 37589 0.289 6674 0.138 4634 0.119 7271 0.113 41587 0.398 10478 0.386 3949 0.093 12 0.000 2662 0.076 6904 0.259 5978 0.254 38 0.000 26 0.968 10.223 11.191
linkedubiq 28271 A28271T 227670 0.998 58404 0.990 39895 0.989 58247 0.987 118401 0.999 16959 0.999 59234 0.999 60167 0.999 75198 0.999 78849 0.999 32932 0.999 59728 0.999 52563 0.999 76220 0.997 61344 0.999 50562 0.998 58289 0.998 64648 0.999 110738 0.999 64031 0.998 46979 0.999 29243 0.999 61664 0.994 38784 0.999 34970 0.998 68386 0.999 26 3.971 21.959999999999994 25.930999999999994
linked 28297 RATG13 T28297C|(nucleocapsid_phosphoprotein:T24C(N8N)) 165494 0.725 4 0.000 40038 0.994 36849 0.625 73699 0.622 16939 0.998 37887 0.639 60096 0.997 31672 0.421 37267 0.472 16462 0.499 45774 0.765 38334 0.728 26531 0.347 28308 0.461 15270 0.301 4835 0.083 137 0.002 110642 0.998 6923 0.108 13870 0.295 3 0.000 1441 0.023 7977 0.205 12309 0.350 4 0.000 26 1.1 10.557999999999998 11.657999999999998
linkedubiq 28311 C28311T|(nucleocapsid_phosphoprotein:C38T(P13L)) 227574 0.998 58432 0.992 39899 0.991 58342 0.991 118315 0.998 16935 0.998 59186 0.998 60108 0.997 75143 0.998 78759 0.998 32938 0.998 58667 0.980 51704 0.982 76116 0.996 61334 0.998 50502 0.997 58209 0.996 64598 0.997 110531 0.997 63925 0.996 46926 0.998 29275 0.999 61762 0.993 38850 0.997 35039 0.997 68232 0.996 26 3.972 21.904000000000003 25.876000000000005
28328 G28328T|(nucleocapsid_phosphoprotein:G55T(G19*)) 130 0.001 209 0.004 21947 0.545 282 0.005 26 0.000 3 0.000 17 0.000 23 0.000 13 0.000 27 0.000 5 0.000 16 0.000 7 0.000 67 0.001 8 0.000 45 0.001 50 0.001 19 0.000 32 0.000 42 0.001 4 0.000 12 0.000 10 0.000 15 0.000 27 0.000 25 0.55 0.009000000000000001 0.559
linkedubiq 28362 GAGAACGCA28362-28370del|(nucleocapsid_phosphoprotein:GGAGAACGCAGT88-99GGTdel(GERS30-33Gdel)) 227313 0.996 58244 0.989 39771 0.989 58174 0.989 118098 0.996 16780 0.988 58531 0.987 60013 0.995 74989 0.996 78598 0.996 32891 0.997 59565 0.996 52414 0.996 75720 0.991 61244 0.997 50363 0.994 58027 0.994 64503 0.996 110454 0.996 63753 0.994 46860 0.996 29261 0.998 61619 0.991 38773 0.995 34971 0.996 67987 0.992 26 3.9629999999999996 21.876999999999995 25.839999999999996
28742 A28742G|(nucleocapsid_phosphoprotein:A469G(I157V)) 8 0.000 9521 0.212 2 0.000 2 0.000 1 0.000 4 0.000 2 0.000 1 0.000 1 0.000 6 0.000 1 0.000 3 0.000 1 0.000 2 0.000 4 0.000 1 0.000 5 0.000 17 0.212 0.0 0.212
28853 T28853C|(nucleocapsid_phosphoprotein:T580C(S194P)) 8 0.000 2864 0.130 2 0.000 1 0.000 1 0.000 1 0.000 3 0.000 2 0.000 1 0.000 2 0.000 3 0.000 1 0.000 1 0.000 7 0.000 1 0.000 1 0.000 274 0.019 1 0.000 2 0.000 19 0.149 0.0 0.149
28905 C28905T|(nucleocapsid_phosphoprotein:C632T(A211V)) 6 0.000 1 0.000 2859 0.128 1 0.000 3 0.000 1 0.000 1 0.000 1 0.000 3 0.000 1 0.000 1 0.000 3 0.000 1 0.000 3 0.000 273 0.019 1 0.000 3 0.000 2 0.000 18 0.147 0.0 0.147
29526 A29526G|(nucleocapsid_phosphoprotein:A1253G(Q418R)) 75 0.000 43856 0.192 28212 0.118 11 0.000 25 0.000 12 0.000 27 0.000 26 0.000 14 0.000 26 0.000 9 0.000 12 0.000 13 0.000 14 0.000 37 0.000 15 0.000 1323 0.011 13 0.000 61 0.000 5 0.000 13 0.000 12 0.000 1749 0.015 11 0.000 9 0.000 10 0.000 26 0.33599999999999997 0.0 0.33599999999999997
29758 RATG13 T29758G 8820 0.094 15291 0.161 1299 0.027 3 0.28200000000000003 0 0.28200000000000003