NY-13 - Complete Raw Mutation Data

Full TSV data with all sample columns and abundance information
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Complete Mutations Data

This table shows the complete data from the mutations.tsv file exactly as it appears in the source. Scroll horizontally to see all columns.

SRR30865899(299388) SRR30865903(532717) SRR30865908(506121) SRR30865911(377261) SRR30865912(365724) SRR30865913(527553) SRR30865914(398601) SRR30865916(347649)
('2024-09-22', '649549') ('2024-09-24', '1173448') ('2024-09-24', '923524') ('2024-09-24', '649549') ('2024-09-24', '1227810') ('2024-09-24', '735054') ('2024-09-24', '781885') ('2024-09-24', '894311')
Sequences Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Total samples Positives Sum Negatives Sum Total Sum
64 C64T 6 0.240 1 0.24 0 0.24
linkedubiq 241 Delta C241T 4298 0.993 8657 0.998 5922 0.996 4956 0.996 3909 0.996 7928 0.996 5685 0.996 5466 0.997 8 0.993 6.975 7.968
284 G284A|(ORF1ab_polyprotein:G19A(G7S))|(ORF1a_polyprotein:G19A(G7S)) 223 0.052 7 0.001 4 0.001 3 0.001 3 0.001 3 0.000 5 0.001 2 0.000 8 0.052 0.005 0.056999999999999995
ubiq 670 T670G|(ORF1ab_polyprotein:T405G(S135R))|(ORF1a_polyprotein:T405G(S135R)) 156 0.994 302 1.000 736 0.996 197 0.961 181 1.000 286 0.997 242 0.992 267 0.996 8 0.994 6.942 7.936
874 C874T|(ORF1ab_polyprotein:C609T(D203D))|(ORF1a_polyprotein:C609T(D203D)) 14 0.073 1 0.073 0 0.073
ubiq 897 C897A|(ORF1ab_polyprotein:C632A(A211D))|(ORF1a_polyprotein:C632A(A211D)) 193 0.995 341 0.997 1171 0.973 254 0.996 244 0.992 465 0.998 293 0.997 646 0.994 8 0.995 6.947 7.942
1026 C1026T|(ORF1ab_polyprotein:C761T(P254L))|(ORF1a_polyprotein:C761T(P254L)) 106 0.074 3 0.002 1 0.001 1 0.001 2 0.001 3 0.003 1 0.001 7 0.074 0.009000000000000001 0.08299999999999999
1540 A1540T|(ORF1ab_polyprotein:A1275T(P425P))|(ORF1a_polyprotein:A1275T(P425P)) 5 0.002 1 0.000 1 0.000 1 0.000 1 0.000 1 0.000 6 0.002 0.0 0.002
1589 G1589T|(ORF1ab_polyprotein:G1324T(G442C))|(ORF1a_polyprotein:G1324T(G442C)) 91 0.049 1 0.000 1 0.001 3 0.049 0.001 0.05
1792 T1792C|(ORF1ab_polyprotein:T1527C(F509F))|(ORF1a_polyprotein:T1527C(F509F)) 11 0.004 1 0.000 1 0.000 1 0.000 1 0.000 1 0.000 6 0.004 0.0 0.004
1838 G1838C|(ORF1ab_polyprotein:G1573C(E525Q))|(ORF1a_polyprotein:G1573C(E525Q)) 19 0.008 1 0.000 2 0.008 0.0 0.008
2037 CTA2037-2039del|(ORF1ab_polyprotein:GCTACT1771-1776GCTdel(AT591-592Adel))|(ORF1a_polyprotein:GCTACT1771-1776GCTdel(AT591-592Adel)) 46 0.029 1 0.029 0 0.029
2317 A2317C|(ORF1ab_polyprotein:A2052C(K684N))|(ORF1a_polyprotein:A2052C(K684N)) 8 0.002 1 0.000 2 0.000 3 0.002 0.0 0.002
2327 T2327A|(ORF1ab_polyprotein:T2062A(L688M))|(ORF1a_polyprotein:T2062A(L688M)) 5 0.001 2 0.000 3 0.000 1 0.000 2 0.000 4 0.000 2 0.000 2 0.000 8 0.001 0.0 0.001
2351 G2351C|(ORF1ab_polyprotein:G2086C(G696R))|(ORF1a_polyprotein:G2086C(G696R)) 104 0.052 1 0.052 0 0.052
2632 G2632C|(ORF1ab_polyprotein:G2367C(M789I))|(ORF1a_polyprotein:G2367C(M789I)) 47 0.068 1 0.068 0 0.068
ubiq 2790 C2790T|(ORF1ab_polyprotein:C2525T(T842I))|(ORF1a_polyprotein:C2525T(T842I)) 578 0.990 1085 0.991 1393 0.989 532 0.991 541 0.989 1195 0.992 626 0.994 640 0.994 8 0.99 6.9399999999999995 7.93
ubiq 3037 RATG13,Delta C3037T|(ORF1ab_polyprotein:C2772T(F924F))|(ORF1a_polyprotein:C2772T(F924F)) 948 0.991 2592 0.990 3584 0.989 1440 0.988 1257 0.993 2328 0.990 1477 0.991 1367 0.993 8 0.991 6.934 7.925
3059 G3059A|(ORF1ab_polyprotein:G2794A(E932K))|(ORF1a_polyprotein:G2794A(E932K)) 14 0.015 2 0.001 1 0.000 1 0.001 4 0.015 0.002 0.017
3111 A3111-3111del|(ORF1ab_polyprotein:2846-2846del(949fs))|(ORF1a_polyprotein:2846-2846del(949fs)) 27 0.016 1 0.016 0 0.016
3230 G3230C|(ORF1ab_polyprotein:G2965C(G989R))|(ORF1a_polyprotein:G2965C(G989R)) 26 0.020 1 0.000 2 0.02 0.0 0.02
3307 G3307A|(ORF1ab_polyprotein:G3042A(M1014I))|(ORF1a_polyprotein:G3042A(M1014I)) 16 0.030 1 0.001 1 0.001 3 0.03 0.002 0.032
ubiq 3431 G3431T|(ORF1ab_polyprotein:G3166T(V1056L))|(ORF1a_polyprotein:G3166T(V1056L)) 792 0.990 1044 0.989 1335 0.993 871 0.990 843 0.940 1867 0.990 792 0.999 1157 0.995 8 0.99 6.896 7.886
3923 C3923G|(ORF1ab_polyprotein:C3658G(P1220A))|(ORF1a_polyprotein:C3658G(P1220A)) 11 0.006 1 0.000 1 0.000 3 0.006 0.0 0.006
3971 G3971T|(ORF1ab_polyprotein:G3706T(V1236F))|(ORF1a_polyprotein:G3706T(V1236F)) 61 0.031 2 0.001 3 0.001 2 0.000 2 0.001 5 0.031 0.003 0.034
4170 CTA4170-4172del|(ORF1ab_polyprotein:CCTACT3904-3909CCTdel(PT1302-1303Pdel))|(ORF1a_polyprotein:CCTACT3904-3909CCTdel(PT1302-1303Pdel)) 74 0.164 1 0.164 0 0.164
linkedubiq 4184 G4184A|(ORF1ab_polyprotein:G3919A(G1307S))|(ORF1a_polyprotein:G3919A(G1307S)) 251 0.992 503 0.998 569 0.995 484 0.996 670 0.994 606 0.997 446 0.989 282 0.993 8 0.992 6.962 7.954
4198 A4198G|(ORF1ab_polyprotein:A3933G(E1311E))|(ORF1a_polyprotein:A3933G(E1311E)) 21 0.082 1 0.002 1 0.002 1 0.002 1 0.004 5 0.082 0.01 0.092
ubiq 4321 C4321T|(ORF1ab_polyprotein:C4056T(A1352A))|(ORF1a_polyprotein:C4056T(A1352A)) 75 0.987 149 0.993 288 0.990 167 0.982 119 1.000 233 0.991 112 0.991 135 1.000 8 0.987 6.947 7.934
5035 T5035G|(ORF1ab_polyprotein:T4770G(Y1590*))|(ORF1a_polyprotein:T4770G(Y1590*)) 20 0.009 1 0.000 1 0.000 1 0.001 4 0.009 0.001 0.009999999999999998
5135 G5135T|(ORF1ab_polyprotein:G4870T(D1624Y))|(ORF1a_polyprotein:G4870T(D1624Y)) 26 0.011 1 0.000 4 0.001 3 0.011 0.001 0.012
5165 T5165A|(ORF1ab_polyprotein:T4900A(Y1634N))|(ORF1a_polyprotein:T4900A(Y1634N)) 24 0.010 1 0.000 1 0.000 1 0.000 4 0.01 0.0 0.01
5622 C5622T|(ORF1ab_polyprotein:C5357T(P1786L))|(ORF1a_polyprotein:C5357T(P1786L)) 40 0.063 1 0.000 1 0.001 3 0.063 0.001 0.064
ubiq 6183 A6183G|(ORF1ab_polyprotein:A5918G(K1973R))|(ORF1a_polyprotein:A5918G(K1973R)) 502 0.982 599 0.990 824 0.990 550 0.980 313 0.991 655 0.994 345 1.000 526 0.996 8 0.982 6.941 7.923
6363 C6363T|(ORF1ab_polyprotein:C6098T(A2033V))|(ORF1a_polyprotein:C6098T(A2033V)) 5 0.156 1 0.156 0 0.156
6473 G6473T|(ORF1ab_polyprotein:G6208T(E2070*))|(ORF1a_polyprotein:G6208T(E2070*)) 5 0.001 1 0.000 2 0.000 2 0.000 2 0.000 1 0.000 6 0.001 0.0 0.001
6505 A6505-6505del|(ORF1ab_polyprotein:6240-6240del(2080fs))|(ORF1a_polyprotein:6240-6240del(2080fs)) 42 0.007 1 0.007 0 0.007
6672 A6672C|(ORF1ab_polyprotein:A6407C(D2136A))|(ORF1a_polyprotein:A6407C(D2136A)) 14 0.013 1 0.000 1 0.001 3 0.013 0.001 0.013999999999999999
7282 TG7282-7283del|(ORF1ab_polyprotein:7017-7018del(2339fs))|(ORF1a_polyprotein:7017-7018del(2339fs)) 13 0.039 1 0.039 0 0.039
7584 G7584T|(ORF1ab_polyprotein:G7319T(G2440V))|(ORF1a_polyprotein:G7319T(G2440V)) 10 0.079 1 0.004 2 0.079 0.004 0.083
ubiq 7842 A7842G|(ORF1ab_polyprotein:A7577G(N2526S))|(ORF1a_polyprotein:A7577G(N2526S)) 46 0.979 62 0.984 100 0.962 39 1.000 34 0.971 75 0.949 65 0.985 119 0.992 8 0.979 6.843 7.822
linkedubiq 8293 C8293T|(ORF1ab_polyprotein:C8028T(T2676T))|(ORF1a_polyprotein:C8028T(T2676T)) 686 1.000 1981 0.993 1332 0.996 642 0.997 905 0.962 2430 0.991 1176 0.991 947 0.997 8 1.0 6.927 7.927
8318 C8318A|(ORF1ab_polyprotein:C8053A(P2685T))|(ORF1a_polyprotein:C8053A(P2685T)) 119 0.173 1 0.000 1 0.001 3 0.173 0.001 0.174
ubiq 8393 G8393A|(ORF1ab_polyprotein:G8128A(A2710T))|(ORF1a_polyprotein:G8128A(A2710T)) 59 0.967 117 1.000 191 0.941 96 1.000 91 0.948 139 1.000 75 0.974 155 1.000 8 0.967 6.8629999999999995 7.829999999999999
8561 G8561T|(ORF1ab_polyprotein:G8296T(V2766F))|(ORF1a_polyprotein:G8296T(V2766F)) 16 0.030 1 0.002 1 0.001 3 0.03 0.003 0.033
8809 C8809T|(ORF1ab_polyprotein:C8544T(D2848D))|(ORF1a_polyprotein:C8544T(D2848D)) 5 0.017 1 0.017 0 0.017
ubiq 9344 C9344T|(ORF1ab_polyprotein:C9079T(L3027F))|(ORF1a_polyprotein:C9079T(L3027F)) 1294 0.993 1418 0.997 3035 0.993 1944 0.995 1967 0.995 4269 0.993 2446 0.995 1208 0.996 8 0.993 6.964 7.957000000000001
ubiq 9424 A9424G|(ORF1ab_polyprotein:A9159G(V3053V))|(ORF1a_polyprotein:A9159G(V3053V)) 2 1.000 3 1.000 4 1.000 6 1.000 6 1.000 2 1.000 5 1.000 7 1.0 6.0 7.0
9489 G9489T|(ORF1ab_polyprotein:G9224T(S3075I))|(ORF1a_polyprotein:G9224T(S3075I)) 171 0.071 5 0.001 4 0.001 2 0.001 3 0.001 4 0.001 2 0.001 3 0.001 8 0.071 0.007 0.078
ubiq 9534 C9534T|(ORF1ab_polyprotein:C9269T(T3090I))|(ORF1a_polyprotein:C9269T(T3090I)) 2419 0.993 4528 0.995 5521 0.993 3161 0.991 2347 0.994 5253 0.993 3586 0.994 3552 0.989 8 0.993 6.949 7.942
9838 A9838-9838del|(ORF1ab_polyprotein:9573-9573del(3191fs))|(ORF1a_polyprotein:9573-9573del(3191fs)) 9 0.005 1 0.000 2 0.005 0.0 0.005
ubiq 10029 C10029T|(ORF1ab_polyprotein:C9764T(T3255I))|(ORF1a_polyprotein:C9764T(T3255I)) 696 0.990 1278 0.997 1753 0.994 1240 0.992 631 0.901 1614 0.998 971 0.999 783 0.990 8 0.99 6.871 7.861000000000001
10134 T10134-10134del|(ORF1ab_polyprotein:9869-9869del(3290fs))|(ORF1a_polyprotein:9869-9869del(3290fs)) 28 0.039 1 0.039 0 0.039
10138 RATG13 C10138T|(ORF1ab_polyprotein:C9873T(N3291N))|(ORF1a_polyprotein:C9873T(N3291N)) 22 0.031 2 0.002 3 0.002 3 0.031 0.004 0.035
ubiq 10198 C10198T|(ORF1ab_polyprotein:C9933T(D3311D))|(ORF1a_polyprotein:C9933T(D3311D)) 9 1.000 16 1.000 20 0.952 12 1.000 13 1.000 13 1.000 18 1.000 10 1.000 8 1.0 6.952 7.952
ubiq 10447 RATG13 G10447A|(ORF1ab_polyprotein:G10182A(R3394R))|(ORF1a_polyprotein:G10182A(R3394R)) 317 0.988 493 0.986 1021 0.990 343 0.997 438 0.991 487 0.996 437 0.995 1017 0.993 8 0.988 6.948 7.936
ubiq 10449 C10449A|(ORF1ab_polyprotein:C10184A(P3395H))|(ORF1a_polyprotein:C10184A(P3395H)) 319 0.994 495 0.990 1024 0.993 340 0.988 440 0.995 488 0.998 433 0.986 1020 0.996 8 0.994 6.946 7.9399999999999995
10645 C10645T|(ORF1ab_polyprotein:C10380T(D3460D))|(ORF1a_polyprotein:C10380T(D3460D)) 348 0.095 3 0.001 7 0.002 7 0.001 5 0.001 3 0.000 12 0.003 4 0.001 8 0.095 0.009000000000000001 0.10400000000000001
10776 CT10776-10777del|(ORF1ab_polyprotein:10511-10512del(3504fs))|(ORF1a_polyprotein:10511-10512del(3504fs)) 7 0.011 1 0.011 0 0.011
10916 G10916T|(ORF1ab_polyprotein:G10651T(E3551*))|(ORF1a_polyprotein:G10651T(E3551*)) 18 0.034 1 0.034 0 0.034
11037 T11037A|(ORF1ab_polyprotein:T10772A(L3591H))|(ORF1a_polyprotein:T10772A(L3591H)) 5 0.001 2 0.000 2 0.000 2 0.000 1 0.000 4 0.000 1 0.000 7 0.001 0.0 0.001
ubiq 11042 G11042T|(ORF1ab_polyprotein:G10777T(V3593F))|(ORF1a_polyprotein:G10777T(V3593F)) 8571 0.988 10689 0.988 9369 0.987 11043 0.980 8235 0.986 14504 0.990 12408 0.989 2835 0.985 8 0.988 6.905 7.893000000000001
11042 G11042T|(ORF1ab_polyprotein:GTT10777-10779TAT(V3593Y))|(ORF1a_polyprotein:GTT10777-10779TAT(V3593Y)) 6 0.001 2 0.000 2 0.000 1 0.000 1 0.000 1 0.000 6 0.000 7 0.001 0.0 0.001
11043 T11043A|(ORF1ab_polyprotein:GTT10777-10779TAT(V3593Y))|(ORF1a_polyprotein:GTT10777-10779TAT(V3593Y)) 6 0.001 2 0.000 2 0.000 1 0.000 1 0.000 1 0.000 6 0.000 7 0.001 0.0 0.001
11059 T11059A|(ORF1ab_polyprotein:T10794A(T3598T))|(ORF1a_polyprotein:T10794A(T3598T)) 6 0.001 4 0.000 4 0.000 3 0.000 3 0.000 7 0.000 5 0.000 7 0.001 0.0 0.001
11063 T11063A|(ORF1ab_polyprotein:T10798A(W3600R))|(ORF1a_polyprotein:T10798A(W3600R)) 5 0.001 4 0.000 4 0.000 5 0.000 2 0.000 7 0.000 5 0.000 7 0.001 0.0 0.001
11149 T11149A|(ORF1ab_polyprotein:T10884A(F3628L))|(ORF1a_polyprotein:T10884A(F3628L)) 20 0.002 5 0.000 3 0.000 2 0.000 1 0.000 3 0.000 2 0.000 7 0.002 0.0 0.002
11169 T11169A|(ORF1ab_polyprotein:T10904A(F3635Y))|(ORF1a_polyprotein:T10904A(F3635Y)) 8 0.001 2 0.000 4 0.000 1 0.000 2 0.000 2 0.000 1 0.000 7 0.001 0.0 0.001
11182 T11182A|(ORF1ab_polyprotein:T10917A(F3639L))|(ORF1a_polyprotein:T10917A(F3639L)) 35 0.004 3 0.000 4 0.000 1 0.000 2 0.000 3 0.000 6 0.004 0.0 0.004
ubiq 11288 TCTGGTTTT11288-11296del|(ORF1ab_polyprotein:11023-11031del(SGF3675-3677del))|(ORF1a_polyprotein:11023-11031del(SGF3675-3677del)) 177 0.994 274 0.993 310 0.994 153 0.981 154 0.987 433 0.977 290 0.997 331 1.000 8 0.994 6.929 7.923
11701 T11701A|(ORF1ab_polyprotein:T11436A(D3812E))|(ORF1a_polyprotein:T11436A(D3812E)) 20 0.009 2 0.001 2 0.009 0.001 0.009999999999999998
ubiq 11727 G11727A|(ORF1ab_polyprotein:G11462A(R3821K))|(ORF1a_polyprotein:G11462A(R3821K)) 2266 0.996 2240 0.995 1911 0.972 1791 0.996 1487 0.979 2044 0.993 2537 0.993 1314 0.989 8 0.996 6.917 7.913
12459 C12459T|(ORF1ab_polyprotein:C12194T(T4065I))|(ORF1a_polyprotein:C12194T(T4065I)) 87 0.041 2 0.001 2 0.001 5 0.002 1 0.000 4 0.001 6 0.041 0.005 0.046
ubiq 12789 C12789T|(ORF1ab_polyprotein:C12524T(T4175I))|(ORF1a_polyprotein:C12524T(T4175I)) 2453 0.996 4461 0.993 5891 0.994 2352 0.995 2961 0.991 5270 0.991 5063 0.994 1877 0.987 8 0.996 6.945 7.941000000000001
ubiq 12815 RATG13 C12815T|(ORF1ab_polyprotein:C12550T(L4184L))|(ORF1a_polyprotein:C12550T(L4184L)) 2429 0.993 4432 0.993 5884 0.995 2341 0.995 2923 0.988 5253 0.995 5022 0.993 1887 0.998 8 0.993 6.957 7.95
ubiq 12880 C12880T|(ORF1ab_polyprotein:C12615T(I4205I))|(ORF1a_polyprotein:C12615T(I4205I)) 6 1.000 9 1.000 18 0.947 10 1.000 6 1.000 7 1.000 5 1.000 8 1.000 8 1.0 6.947 7.947
13211 A13211G|(ORF1ab_polyprotein:A12946G(M4316V))|(ORF1a_polyprotein:A12946G(M4316V)) 66 0.054 3 0.001 9 0.003 3 0.001 1 0.000 2 0.001 6 0.054 0.006 0.06
ubiq 13339 T13339C|(ORF1ab_polyprotein:T13074C(N4358N))|(ORF1a_polyprotein:T13074C(N4358N)) 1166 0.994 2464 0.998 2684 0.995 2017 0.996 1627 0.970 2548 0.993 1652 0.995 1887 0.994 8 0.994 6.941 7.935
14371 G14371C|(ORF1ab_polyprotein:G14107C(A4703P)) 13 0.025 1 0.002 2 0.025 0.002 0.027000000000000003
ubiq 14408 Delta C14408T|(ORF1ab_polyprotein:C14144T(P4715L)) 508 0.994 546 0.991 729 0.993 317 0.991 504 0.994 461 0.991 395 0.992 504 0.998 8 0.994 6.95 7.944
15178 G15178A|(ORF1ab_polyprotein:G14914A(A4972T)) 6 0.034 1 0.002 2 0.034 0.002 0.036000000000000004
15658 G15658A|(ORF1ab_polyprotein:G15394A(D5132N)) 55 0.051 1 0.001 1 0.001 1 0.001 1 0.001 2 0.002 6 0.051 0.006 0.056999999999999995
ubiq 15714 RATG13 C15714T|(ORF1ab_polyprotein:C15450T(L5150L)) 1073 0.993 1007 0.988 1825 0.993 1281 0.992 1107 0.996 1749 0.993 978 0.993 555 0.998 8 0.993 6.953 7.946000000000001
15728 T15728G|(ORF1ab_polyprotein:T15464G(V5155G)) 12 0.011 1 0.011 0 0.011
ubiq 15756 T15756A|(ORF1ab_polyprotein:T15492A(S5164S)) 1469 0.989 1390 0.994 2385 0.975 1775 0.993 1455 0.953 2474 0.993 1624 0.991 889 0.948 8 0.989 6.8469999999999995 7.835999999999999
15857 C15857T|(ORF1ab_polyprotein:C15593T(T5198I)) 19 0.045 1 0.002 2 0.045 0.002 0.047
15886 C15886T|(ORF1ab_polyprotein:C15622T(H5208Y)) 16 0.037 1 0.001 1 0.003 3 0.037 0.004 0.040999999999999995
16029 TA16029-16030del|(ORF1ab_polyprotein:15765-15766del(5255fs)) 14 0.026 1 0.001 2 0.026 0.001 0.027
16181 G16181A|(ORF1ab_polyprotein:G15917A(R5306K)) 22 0.026 2 0.002 2 0.001 3 0.026 0.003 0.028999999999999998
16201 T16201C|(ORF1ab_polyprotein:T15937C(Y5313H)) 52 0.062 3 0.002 1 0.001 1 0.001 1 0.000 2 0.002 2 0.002 7 0.062 0.008 0.07
16308 C16308T|(ORF1ab_polyprotein:C16044T(F5348F)) 47 0.056 1 0.001 1 0.001 2 0.002 4 0.056 0.004 0.06
16568 C16568T|(ORF1ab_polyprotein:C16304T(T5435I)) 53 0.070 2 0.002 1 0.001 2 0.002 4 0.07 0.005 0.07500000000000001
16616 C16616A|(ORF1ab_polyprotein:C16352A(T5451N)) 35 0.040 1 0.001 2 0.04 0.001 0.041
16746 T16746A|(ORF1ab_polyprotein:T16482A(G5494G)) 52 0.015 2 0.000 1 0.000 1 0.000 1 0.000 2 0.000 2 0.000 7 0.015 0.0 0.015
16768 C16768A|(ORF1ab_polyprotein:C16504A(R5502R)) 127 0.037 1 0.000 4 0.001 6 0.001 1 0.000 2 0.000 4 0.001 7 0.037 0.003 0.04
17058 G17058T|(ORF1ab_polyprotein:G16794T(M5598I)) 74 0.024 2 0.000 1 0.000 1 0.000 2 0.000 3 0.001 6 0.024 0.001 0.025
17221 A17221C|(ORF1ab_polyprotein:A16957C(K5653Q)) 5 0.001 2 0.000 1 0.000 1 0.000 1 0.000 2 0.000 6 0.001 0.0 0.001
17260 T17260G|(ORF1ab_polyprotein:T16996G(C5666G)) 7 0.001 1 0.000 1 0.000 1 0.000 1 0.000 3 0.000 6 0.001 0.0 0.001
17265 T17265A|(ORF1ab_polyprotein:T17001A(F5667L)) 5 0.001 2 0.000 3 0.000 2 0.000 1 0.000 5 0.001 0.0 0.001
17271 A17271T|(ORF1ab_polyprotein:A17007T(K5669N)) 17 0.003 1 0.000 1 0.000 1 0.000 2 0.000 2 0.000 2 0.000 7 0.003 0.0 0.003
17363 T17363G|(ORF1ab_polyprotein:T17099G(I5700S)) 5 0.001 1 0.000 2 0.000 1 0.000 1 0.000 2 0.000 1 0.000 1 0.000 8 0.001 0.0 0.001
ubiq 17410 C17410T|(ORF1ab_polyprotein:C17146T(R5716C)) 168 0.988 198 0.980 375 0.997 200 0.995 164 0.965 489 0.992 240 0.996 374 0.984 8 0.988 6.909 7.897
17466 A17466T|(ORF1ab_polyprotein:A17202T(T5734T)) 10 0.001 11 0.000 4 0.000 4 0.000 6 0.000 4 0.000 3 0.000 7 0.001 0.0 0.001
17486 T17486A|(ORF1ab_polyprotein:T17222A(L5741Q)) 10 0.001 6 0.000 6 0.000 6 0.000 7 0.000 7 0.000 5 0.000 1 0.000 8 0.001 0.0 0.001
17553 A17553C|(ORF1ab_polyprotein:A17289C(G5763G)) 9 0.001 7 0.000 2 0.000 3 0.000 1 0.000 3 0.000 5 0.000 7 0.001 0.0 0.001
17658 G17658T|(ORF1ab_polyprotein:G17394T(M5798I)) 524 0.031 3 0.000 1 0.000 1 0.000 4 0.031 0.0 0.031
17750 C17750T|(ORF1ab_polyprotein:C17486T(A5829V)) 133 0.043 1 0.000 1 0.000 1 0.000 2 0.001 2 0.000 2 0.001 3 0.001 8 0.043 0.003 0.046
17763 T17763A|(ORF1ab_polyprotein:T17499A(A5833A)) 5 0.002 1 0.000 1 0.000 3 0.002 0.0 0.002
17792 A17792C|(ORF1ab_polyprotein:A17528C(N5843T)) 6 0.002 1 0.000 1 0.000 1 0.000 4 0.002 0.0 0.002
18061 T18061-18061del|(ORF1ab_polyprotein:17797-17797del(5933fs)) 66 0.017 1 0.000 3 0.000 3 0.017 0.0 0.017
ubiq 18163 A18163G|(ORF1ab_polyprotein:A17899G(I5967V)) 3920 0.994 5603 0.996 3855 0.997 3713 0.995 4428 0.998 7512 0.995 3743 0.995 3314 0.995 8 0.994 6.971 7.965
18362 A18362C|(ORF1ab_polyprotein:A18098C(Q6033P)) 9 0.002 2 0.000 2 0.000 1 0.000 2 0.000 5 0.002 0.0 0.002
18429 T18429A|(ORF1ab_polyprotein:T18165A(N6055K)) 5 0.001 1 0.000 1 0.000 1 0.000 1 0.000 3 0.000 6 0.001 0.0 0.001
ubiq 18492 A18492G|(ORF1ab_polyprotein:A18228G(P6076P)) 494 1.000 601 0.998 1030 0.999 327 0.991 409 0.953 509 0.994 479 0.994 169 0.994 8 1.0 6.923 7.923
18562 AA18562-18563del|(ORF1ab_polyprotein:18298-18299del(6100fs)) 95 0.054 1 0.054 0 0.054
ubiq 18894 C18894T|(ORF1ab_polyprotein:C18630T(C6210C)) 1125 0.993 2265 0.995 2895 0.990 1424 0.975 1915 0.941 2222 0.996 2077 0.992 1786 0.996 8 0.993 6.885 7.878
19172 C19172T|(ORF1ab_polyprotein:C18908T(T6303I)) 20 0.064 2 0.005 2 0.064 0.005 0.069
19178 G19178T|(ORF1ab_polyprotein:G18914T(G6305V)) 8 0.026 1 0.026 0 0.026
19596 C19596A|(ORF1ab_polyprotein:C19332A(L6444L)) 163 0.062 1 0.000 1 0.000 1 0.000 4 0.062 0.0 0.062
19611 A19611T|(ORF1ab_polyprotein:A19347T(T6449T)) 6 0.002 1 0.000 1 0.000 2 0.000 4 0.002 0.0 0.002
19646 T19646-19646del|(ORF1ab_polyprotein:19382-19382del(6461fs)) 107 0.041 1 0.000 2 0.041 0.0 0.041
19656 RATG13 G19656A|(ORF1ab_polyprotein:G19392A(K6464K)) 114 0.044 4 0.001 3 0.001 1 0.000 1 0.000 2 0.001 8 0.002 7 0.044 0.005 0.048999999999999995
19725 T19725G|(ORF1ab_polyprotein:T19461G(V6487V)) 141 0.053 3 0.001 1 0.000 3 0.053 0.001 0.054
ubiq 19955 C19955T|(ORF1ab_polyprotein:C19691T(T6564I)) 5804 0.994 9711 0.994 8812 0.995 7009 0.994 6244 0.993 10794 0.995 7641 0.994 6778 0.994 8 0.994 6.959 7.952999999999999
19978 A19978C|(ORF1ab_polyprotein:A19714C(T6572P)) 6 0.001 1 0.000 2 0.000 2 0.000 1 0.000 1 0.000 1 0.000 7 0.001 0.0 0.001
20002 G20002T|(ORF1ab_polyprotein:G19738T(D6580Y)) 6 0.001 1 0.000 2 0.000 2 0.000 2 0.000 3 0.000 1 0.000 7 0.001 0.0 0.001
ubiq 20055 A20055G|(ORF1ab_polyprotein:A19791G(E6597E)) 5800 0.995 9152 0.938 8824 0.993 7001 0.992 6232 0.993 10759 0.994 7626 0.994 6828 0.996 8 0.995 6.9 7.8950000000000005
20265 A20265C|(ORF1ab_polyprotein:A20001C(E6667D)) 6 0.002 1 0.000 2 0.002 0.0 0.002
20268 A20268C|(ORF1ab_polyprotein:A20004C(L6668F)) 5 0.002 2 0.000 2 0.000 1 0.000 1 0.000 1 0.000 6 0.002 0.0 0.002
20352 G20352A|(ORF1ab_polyprotein:G20088A(Q6696Q)) 16 0.035 2 0.002 2 0.035 0.002 0.037000000000000005
20370 A20370G|(ORF1ab_polyprotein:A20106G(L6702L)) 10 0.022 1 0.001 1 0.001 3 0.022 0.002 0.024
20496 T20496A|(ORF1ab_polyprotein:T20232A(C6744*)) 5 0.001 3 0.000 1 0.000 2 0.000 2 0.000 4 0.000 3 0.000 2 0.000 8 0.001 0.0 0.001
20509 T20509A|(ORF1ab_polyprotein:T20245A(L6749I)) 5 0.001 4 0.000 1 0.000 1 0.000 3 0.000 1 0.000 1 0.000 7 0.001 0.0 0.001
20561 T20561A|(ORF1ab_polyprotein:T20297A(V6766D)) 5 0.001 2 0.000 1 0.000 2 0.000 2 0.000 2 0.000 6 0.001 0.0 0.001
20575 A20575C|(ORF1ab_polyprotein:A20311C(K6771Q)) 5 0.001 1 0.000 2 0.000 3 0.001 0.0 0.001
20595 A20595T|(ORF1ab_polyprotein:A20331T(T6777T)) 5 0.001 1 0.000 1 0.000 2 0.000 1 0.000 2 0.000 6 0.001 0.0 0.001
20598 A20598C|(ORF1ab_polyprotein:A20334C(E6778D)) 7 0.001 1 0.001 0 0.001
20697 T20697G|(ORF1ab_polyprotein:T20433G(N6811K)) 5 0.001 4 0.000 1 0.000 3 0.000 4 0.000 1 0.000 3 0.000 2 0.000 8 0.001 0.0 0.001
20728 A20728G|(ORF1ab_polyprotein:AAG20464-20466GAT(K6822D)) 8 0.001 1 0.001 0 0.001
20730 G20730T|(ORF1ab_polyprotein:AAG20464-20466GAT(K6822D)) 8 0.001 1 0.001 0 0.001
20730 G20730T|(ORF1ab_polyprotein:G20466T(K6822N)) 1139 0.149 12 0.001 159 0.014 9 0.001 10 0.001 15 0.001 16 0.001 8 0.001 8 0.149 0.02 0.16899999999999998
20761 A20761T|(ORF1ab_polyprotein:A20497T(T6833S)) 5 0.001 4 0.000 3 0.000 4 0.000 5 0.000 6 0.000 3 0.000 2 0.000 8 0.001 0.0 0.001
20867 T20867A|(ORF1ab_polyprotein:T20603A(F6868Y)) 5 0.001 2 0.000 1 0.000 2 0.000 4 0.000 1 0.000 3 0.000 7 0.001 0.0 0.001
20867 T20867G|(ORF1ab_polyprotein:T20603G(F6868C)) 12 0.002 4 0.000 1 0.000 1 0.000 2 0.000 2 0.000 1 0.000 7 0.002 0.0 0.002
21021 T21021A|(ORF1ab_polyprotein:T20757A(A6919A)) 5 0.001 3 0.000 2 0.000 2 0.000 1 0.000 1 0.000 1 0.000 7 0.001 0.0 0.001
21066 T21066A|(ORF1ab_polyprotein:T20802A(T6934T)) 5 0.001 1 0.000 3 0.000 2 0.000 4 0.000 2 0.000 6 0.001 0.0 0.001
21092 C21092A|(ORF1ab_polyprotein:C20828A(S6943Y)) 342 0.053 6 0.001 10 0.001 12 0.001 7 0.001 10 0.001 5 0.000 3 0.001 8 0.053 0.006 0.059
21098 A21098C|(ORF1ab_polyprotein:A20834C(E6945A)) 5 0.001 3 0.000 3 0.000 3 0.000 3 0.000 2 0.000 4 0.000 7 0.001 0.0 0.001
21271 T21271G|(ORF1ab_polyprotein:T21007G(F7003V)) 11 0.001 3 0.000 6 0.000 9 0.000 5 0.000 9 0.000 11 0.000 6 0.000 8 0.001 0.0 0.001
21274 T21274G|(ORF1ab_polyprotein:T21010G(L7004V)) 13 0.001 6 0.000 14 0.000 5 0.000 9 0.000 16 0.000 17 0.000 10 0.000 8 0.001 0.0 0.001
21286 A21286C|(ORF1ab_polyprotein:A21022C(N7008H)) 20 0.001 3 0.000 8 0.000 2 0.000 3 0.000 9 0.000 12 0.000 8 0.000 8 0.001 0.0 0.001
21303 A21303T|(ORF1ab_polyprotein:A21039T(P7013P)) 10 0.001 2 0.000 8 0.000 10 0.000 10 0.000 8 0.000 17 0.000 7 0.001 0.0 0.001
21305 G21305A|(ORF1ab_polyprotein:CGC21040-21042CAT(R7014H)) 8 0.000 1 0.0 0 0.0
21306 RATG13 C21306T|(ORF1ab_polyprotein:C21042T(R7014R)) 3334 0.180 17 0.001 56 0.002 18 0.001 29 0.001 44 0.001 47 0.001 10 0.000 8 0.18 0.007 0.187
21306 RATG13 C21306T|(ORF1ab_polyprotein:CGC21040-21042CAT(R7014H)) 8 0.000 1 0.0 0 0.0
21307 G21307C|(ORF1ab_polyprotein:G21043C(E7015Q)) 845 0.046 2 0.000 5 0.000 3 0.000 4 0.000 6 0.000 5 0.000 3 0.000 8 0.046 0.0 0.046
21363 T21363G|(ORF1ab_polyprotein:T21099G(N7033K)) 10 0.001 3 0.000 4 0.000 5 0.000 7 0.000 4 0.000 5 0.000 2 0.000 8 0.001 0.0 0.001
21387 T21387G|(ORF1ab_polyprotein:T21123G(S7041S)) 10 0.001 9 0.000 6 0.000 5 0.000 5 0.000 9 0.000 7 0.000 4 0.000 8 0.001 0.0 0.001
21395 A21395C|(ORF1ab_polyprotein:A21131C(D7044A)) 12 0.001 1 0.000 12 0.000 5 0.000 6 0.000 8 0.000 12 0.000 10 0.000 8 0.001 0.0 0.001
ubiq 21618 C21618T|(surface_glycoprotein:C56T(T19I)) 198 0.995 442 0.989 761 0.993 398 0.993 298 1.000 270 1.000 407 0.960 472 0.987 8 0.995 6.922 7.917
ubiq 21622 RATG13 C21622T|(surface_glycoprotein:C60T(T20T)) 197 0.990 447 1.000 733 0.957 401 1.000 297 0.997 269 0.996 422 0.995 475 0.994 8 0.99 6.939 7.929
ubiq 21624 G21624C|(surface_glycoprotein:G62C(R21T)) 198 0.995 445 0.996 761 0.993 393 0.980 285 0.956 270 1.000 420 0.991 476 0.996 8 0.995 6.912 7.907
ubiq 21633 TACCCCCTG21633-21641del|(surface_glycoprotein:TTACCCCCTGCA70-81TCAdel(LPPA24-27Sdel)) 197 0.990 422 0.944 765 0.999 384 0.958 289 0.970 270 1.000 404 0.953 476 0.996 8 0.99 6.82 7.8100000000000005
ubiq 21711 RATG13 C21711T|(surface_glycoprotein:C149T(S50L)) 204 0.971 403 0.995 942 1.000 399 0.995 343 0.991 371 0.995 417 1.000 532 0.994 8 0.971 6.97 7.941
ubiq 21765 TACATG21765-21770del|(surface_glycoprotein:ATACATGTC202-210ATCdel(IHV68-70Idel)) 53 0.981 76 0.962 340 0.994 67 0.957 96 0.950 151 0.921 76 1.000 159 0.988 8 0.981 6.772 7.753
21846 C21846T|(surface_glycoprotein:C284T(T95I)) 92 0.174 1 0.001 1 0.001 3 0.003 4 0.174 0.005 0.179
linkedubiq 21941 G21941T|(surface_glycoprotein:G379T(V127F)) 1298 0.990 2012 0.991 3620 0.994 2413 0.986 2458 0.990 3047 0.993 3261 0.990 4232 0.993 8 0.99 6.937 7.9270000000000005
linkedubiq 21987 G21987A|(surface_glycoprotein:G425A(G142D)) 1311 0.992 2057 0.995 3703 0.995 2464 0.996 2521 0.992 3102 0.993 3243 0.981 4257 0.995 8 0.992 6.947 7.939
linkedubiq 21991 TTA21991-21993del|(surface_glycoprotein:GTTTAT427-432GTTdel(VY143-144Vdel)) 1303 0.990 2040 0.990 3678 0.991 2431 0.987 2490 0.986 3088 0.991 3261 0.990 4203 0.986 8 0.99 6.921 7.9110000000000005
ubiq 22031 T22031-22031del|(surface_glycoprotein:TTCAGA469-474TCAGGA(FR157-158SG)) 123 0.953 193 0.990 619 0.994 235 0.983 341 0.991 405 0.993 233 0.979 292 0.964 8 0.953 6.894 7.847
ubiq 22035 22035-insertG|(surface_glycoprotein:TTCAGA469-474TCAGGA(FR157-158SG)) 123 0.953 193 0.990 619 0.994 235 0.983 341 0.991 405 0.993 233 0.979 292 0.964 8 0.953 6.894 7.847
22073 G22073T|(surface_glycoprotein:G511T(V171F)) 6 0.047 1 0.047 0 0.047
22136 T22136A|(surface_glycoprotein:T574A(F192I)) 11 0.007 1 0.000 1 0.000 1 0.000 4 0.007 0.0 0.007
ubiq 22194 ATT22194-22196del|(surface_glycoprotein:AATTTA631-636ATAdel(NL211-212Idel)) 1664 0.995 2203 0.993 2834 0.996 2005 0.996 1622 0.994 2408 0.993 2505 0.986 2047 0.994 8 0.995 6.952 7.947
ubiq 22208 C22208T|(surface_glycoprotein:C646T(L216F)) 1672 0.996 2213 0.994 2846 0.996 2011 0.993 1631 0.993 2413 0.991 2533 0.993 2055 0.993 8 0.996 6.953 7.949
22217 G22217T|(surface_glycoprotein:G655T(G219C)) 50 0.030 1 0.000 2 0.03 0.0 0.03
ubiq 22295 C22295A|(surface_glycoprotein:C733A(H245N)) 79 1.000 14 1.000 25 1.000 15 0.938 14 1.000 12 0.923 14 1.000 14 1.000 8 1.0 6.861 7.861
ubiq 22353 C22353A|(surface_glycoprotein:C791A(A264D)) 3147 0.994 4499 0.989 7090 0.992 4183 0.995 4975 0.987 8925 0.992 5117 0.990 7768 0.991 8 0.994 6.936 7.93
ubiq 22556 A22556G|(surface_glycoprotein:A994G(I332V)) 30 1.000 70 0.986 130 0.985 77 1.000 49 0.980 95 0.990 83 0.988 135 1.000 8 1.0 6.929 7.929
ubiq 22577 G22577C|(surface_glycoprotein:GGT1015-1017CAT(G339H)) 30 1.000 70 0.986 130 0.985 76 0.987 50 1.000 94 0.979 82 0.988 135 1.000 8 1.0 6.925 7.925
ubiq 22578 G22578A|(surface_glycoprotein:GGT1015-1017CAT(G339H)) 30 1.000 70 0.986 130 0.985 76 0.987 50 1.000 94 0.979 82 0.988 135 1.000 8 1.0 6.925 7.925
ubiq 22629 A22629C|(surface_glycoprotein:A1067C(K356T)) 2239 0.987 3086 0.983 4945 0.993 3122 0.931 3951 0.993 4115 0.992 2671 0.991 2378 0.991 8 0.987 6.874 7.861
22674 C22674T|(surface_glycoprotein:TCC1111-1113TTT(S371F)) 136 0.059 3 0.001 3 0.001 1 0.000 3 0.001 5 0.001 5 0.002 2 0.001 8 0.059 0.007 0.066
22675 C22675T|(surface_glycoprotein:TCC1111-1113TTT(S371F)) 136 0.059 3 0.001 3 0.001 1 0.000 3 0.001 5 0.001 5 0.002 2 0.001 8 0.059 0.007 0.066
ubiq 22679 T22679C|(surface_glycoprotein:T1117C(S373P)) 2303 0.997 3149 0.995 4989 0.992 3381 0.999 3918 0.973 4178 0.995 2714 0.995 2409 0.995 8 0.997 6.944 7.941
ubiq 22686 C22686T|(surface_glycoprotein:C1124T(S375F)) 2293 0.993 3143 0.993 4991 0.992 3358 0.991 3914 0.972 4173 0.994 2714 0.995 2409 0.994 8 0.993 6.931 7.924
ubiq 22688 A22688G|(surface_glycoprotein:A1126G(T376A)) 2292 0.992 3147 0.995 4994 0.993 3362 0.993 4008 0.996 4173 0.994 2713 0.995 2411 0.995 8 0.992 6.961 7.953
22739 AC22739-22740del|(surface_glycoprotein:1177-1178del(393fs)) 97 0.043 1 0.043 0 0.043
22751 G22751T|(surface_glycoprotein:G1189T(A397S)) 138 0.061 1 0.000 2 0.000 3 0.001 1 0.000 5 0.061 0.001 0.062
ubiq 22770 G22770A|(surface_glycoprotein:G1208A(R403K)) 2273 0.994 3091 0.995 4906 0.994 3073 0.931 3805 0.997 4095 0.995 2616 0.984 2291 0.988 8 0.994 6.884 7.878
ubiq 22775 G22775A|(surface_glycoprotein:G1213A(D405N)) 2275 0.995 3083 0.992 4913 0.995 3281 0.994 3789 0.992 4098 0.996 2640 0.993 2294 0.989 8 0.995 6.951 7.946
ubiq 22786 A22786C|(surface_glycoprotein:A1224C(R408S)) 21 0.955 53 0.930 70 0.933 33 0.943 31 0.838 61 0.871 43 0.935 54 0.964 8 0.955 6.414 7.369
ubiq 22813 G22813T|(surface_glycoprotein:G1251T(K417N)) 18 1.000 44 0.957 62 1.000 16 0.889 16 0.941 47 0.959 32 0.970 50 1.000 8 1.0 6.716 7.716
ubiq 22895 G22895C|(surface_glycoprotein:GTT1333-1335CAT(V445H)) 1313 0.993 1988 0.990 2280 0.954 2370 0.979 1466 0.900 2448 0.828 1973 0.973 1556 0.989 8 0.993 6.6129999999999995 7.606
ubiq 22896 RATG13 T22896A|(surface_glycoprotein:GTT1333-1335CAT(V445H)) 1313 0.993 1988 0.990 2280 0.954 2370 0.979 1466 0.900 2448 0.828 1973 0.973 1556 0.989 8 0.993 6.6129999999999995 7.606
ubiq 22898 G22898A|(surface_glycoprotein:G1336A(G446S)) 1318 0.997 2001 0.997 2306 0.965 2368 0.978 1621 0.996 2945 0.997 2021 0.997 1565 0.994 8 0.997 6.9239999999999995 7.920999999999999
ubiq 22910 A22910G|(surface_glycoprotein:A1348G(N450D)) 1312 0.992 2001 0.996 2376 0.994 2417 0.997 1603 0.984 2937 0.994 2016 0.994 1559 0.990 8 0.992 6.949 7.941
ubiq 22916 C22916T|(surface_glycoprotein:CTG1354-1356TGG(L452W)) 1317 0.997 1989 0.990 2379 0.995 2377 0.981 1624 0.997 2931 0.992 2017 0.994 1570 0.997 8 0.997 6.946 7.943
ubiq 22917 Delta T22917G|(surface_glycoprotein:CTG1354-1356TGG(L452W)) 1317 0.997 1989 0.990 2379 0.995 2377 0.981 1624 0.997 2931 0.992 2017 0.994 1570 0.997 8 0.997 6.946 7.943
ubiq 22926 T22926C|(surface_glycoprotein:T1364C(L455S)) 1302 0.995 1967 0.996 2335 0.998 2358 0.978 1612 0.996 2911 0.997 1980 0.989 1528 0.993 8 0.995 6.947 7.942
ubiq 22942 T22942A|(surface_glycoprotein:T1380A(N460K)) 1296 0.992 1948 0.992 2317 0.991 2314 0.961 1600 0.992 2888 0.992 1985 0.993 1503 0.984 8 0.992 6.905 7.897
ubiq 22992 G22992A|(surface_glycoprotein:G1430A(S477N)) 1262 0.956 1969 0.993 2200 0.935 2408 0.995 1635 0.996 2886 0.972 2006 0.995 1506 0.979 8 0.956 6.865 7.821
23006 G23006C|(surface_glycoprotein:G1444C(G482R)) 77 0.056 1 0.056 0 0.056
23012 GAA23012-23014del|(surface_glycoprotein:1450-1452del(E484del)) 80 0.058 1 0.000 2 0.058 0.0 0.058
ubiq 23018 RATG13 T23018C|(surface_glycoprotein:TTT1456-1458CCT(F486P)) 2991 0.970 5286 0.987 4941 0.996 4625 0.988 3540 0.997 6024 0.996 4610 0.997 3649 0.998 8 0.97 6.959 7.928999999999999
ubiq 23019 T23019C|(surface_glycoprotein:TTT1456-1458CCT(F486P)) 2991 0.970 5286 0.987 4941 0.996 4625 0.988 3540 0.997 6024 0.996 4610 0.997 3649 0.998 8 0.97 6.959 7.928999999999999
ubiq 23055 A23055G|(surface_glycoprotein:A1493G(Q498R)) 3102 0.996 5396 0.996 4984 0.995 4703 0.997 3572 0.994 6081 0.992 4649 0.994 3679 0.995 8 0.996 6.963 7.959
ubiq 23063 A23063T|(surface_glycoprotein:A1501T(N501Y)) 3094 0.994 5382 0.993 4985 0.996 4688 0.994 3572 0.994 6094 0.995 4648 0.994 3686 0.997 8 0.994 6.963 7.957
ubiq 23075 RATG13 T23075C|(surface_glycoprotein:T1513C(Y505H)) 1863 0.995 3571 0.997 2786 0.994 2449 0.995 2058 0.998 3336 0.996 2773 0.991 2251 0.998 8 0.995 6.969 7.964
23166 A23166C|(surface_glycoprotein:A1604C(K535T)) 55 0.014 3 0.000 1 0.000 2 0.000 4 0.014 0.0 0.014
23179 C23179A|(surface_glycoprotein:C1617A(V539V)) 262 0.066 4 0.000 3 0.000 1 0.000 1 0.000 1 0.000 1 0.000 7 0.066 0.0 0.066
23202 C23202A|(surface_glycoprotein:C1640A(T547K)) 153 0.067 3 0.001 2 0.067 0.001 0.068
linkedubiq 23222 G23222A|(surface_glycoprotein:G1660A(E554K)) 2187 0.995 5138 0.996 3800 0.990 4174 0.997 2539 0.997 3733 0.996 3182 0.997 3601 0.996 8 0.995 6.969 7.964
linkedubiq 23271 C23271T|(surface_glycoprotein:C1709T(A570V)) 2136 0.997 5082 0.995 3799 0.994 4096 0.995 2485 0.995 3673 0.996 3133 0.995 3516 0.994 8 0.997 6.964 7.961
linkedubiq 23403 Delta A23403G|(surface_glycoprotein:A1841G(D614G)) 85 0.955 163 0.926 220 0.978 99 0.952 81 0.910 155 0.969 140 0.986 180 0.978 8 0.955 6.699 7.654
ubiq 23423 C23423T|(surface_glycoprotein:C1861T(P621S)) 4965 0.992 11473 0.993 10597 0.992 7086 0.993 5952 0.992 6697 0.993 5727 0.988 6551 0.992 8 0.992 6.943 7.935
23426 G23426T|(surface_glycoprotein:G1864T(V622F)) 187 0.037 7 0.001 12 0.001 3 0.000 5 0.001 6 0.001 8 0.001 7 0.037 0.005 0.041999999999999996
23430 CTA23430-23432del|(surface_glycoprotein:GCTATT1867-1872GTTdel(AI623-624Vdel)) 10 0.002 1 0.002 0 0.002
23466 T23466-23466del|(surface_glycoprotein:1904-1904del(635fs)) 44 0.009 2 0.000 2 0.000 1 0.000 1 0.000 5 0.009 0.0 0.009
23497 A23497T|(surface_glycoprotein:A1935T(T645T)) 5 0.001 2 0.000 4 0.000 1 0.000 2 0.000 1 0.000 6 0.001 0.0 0.001
ubiq 23525 C23525T|(surface_glycoprotein:C1963T(H655Y)) 4948 0.993 11408 0.993 10401 0.992 7061 0.993 5947 0.995 6632 0.996 5675 0.994 6460 0.994 8 0.993 6.957 7.95
ubiq 23599 T23599G|(surface_glycoprotein:T2037G(N679K)) 35 1.000 87 0.989 222 0.991 74 0.987 51 0.981 48 0.980 46 0.807 93 0.989 8 1.0 6.724 7.724
ubiq 23604 Delta C23604G|(surface_glycoprotein:C2042G(P681R)) 35 1.000 88 1.000 222 0.991 75 1.000 52 1.000 48 0.980 57 1.000 93 0.989 8 1.0 6.96 7.96
23757 C23757T|(surface_glycoprotein:C2195T(T732I)) 91 0.092 1 0.000 1 0.000 2 0.001 3 0.001 1 0.000 1 0.000 7 0.092 0.002 0.094
ubiq 23854 C23854A|(surface_glycoprotein:C2292A(N764K)) 363 0.976 966 0.978 1423 0.986 1016 0.978 833 0.978 1158 0.973 1095 0.973 920 0.980 8 0.976 6.846 7.822
ubiq 23948 G23948T|(surface_glycoprotein:G2386T(D796Y)) 2084 0.991 5070 0.989 4606 0.994 3200 0.985 4503 0.994 3884 0.995 3507 0.992 3347 0.991 8 0.991 6.9399999999999995 7.930999999999999
24032 A24032C|(surface_glycoprotein:A2470C(N824H)) 19 0.009 2 0.000 2 0.000 3 0.009 0.0 0.009
24359 24359-insertA|(surface_glycoprotein:2797insertA(933fs)) 30 0.152 1 0.152 0 0.152
ubiq 24424 A24424T|(surface_glycoprotein:A2862T(Q954H)) 97 1.000 175 1.000 539 0.996 143 0.993 147 1.000 136 1.000 129 0.977 383 0.997 8 1.0 6.963 7.963
24434 G24434T|(surface_glycoprotein:G2872T(A958S)) 6 0.062 1 0.062 0 0.062
ubiq 24469 T24469A|(surface_glycoprotein:T2907A(N969K)) 263 0.985 528 0.987 840 0.991 351 0.994 312 0.990 405 0.988 291 0.957 541 0.994 8 0.985 6.901 7.886
24489 T24489-24489del|(surface_glycoprotein:2927-2927del(976fs)) 8 0.030 1 0.002 2 0.03 0.002 0.032
24865 C24865T|(surface_glycoprotein:C3303T(H1101H)) 264 0.250 12 0.005 4 0.001 2 0.001 4 0.25 0.007 0.257
linked 24872 G24872T|(surface_glycoprotein:G3310T(V1104L)) 775 0.742 1456 0.557 2970 0.716 1964 0.820 1185 0.744 680 0.446 1506 0.803 1954 0.677 8 0.742 4.763 5.505
ubiq 24990 C24990T|(surface_glycoprotein:C3428T(P1143L)) 44 1.000 120 0.976 127 0.992 35 1.000 35 0.946 69 1.000 30 1.000 79 0.988 8 1.0 6.902 7.902
ubiq 25000 RATG13 C25000T|(surface_glycoprotein:C3438T(D1146D)) 44 1.000 122 0.992 127 0.992 35 1.000 36 0.973 68 0.986 30 1.000 80 1.000 8 1.0 6.943 7.943
25145 G25145C|(surface_glycoprotein:G3583C(E1195Q)) 42 0.162 1 0.162 0 0.162
ubiq 25207 C25207T|(surface_glycoprotein:C3645T(Y1215Y)) 118 1.000 287 0.993 433 0.993 161 0.982 139 0.986 192 0.990 134 0.993 414 0.988 8 1.0 6.925 7.925
ubiq 25584 C25584T|(ORF3a_protein:C192T(T64T)) 1264 0.991 1337 0.925 962 0.995 1060 0.995 1100 0.991 1376 0.977 766 0.995 956 0.983 8 0.991 6.861 7.851999999999999
25613 C25613T|(ORF3a_protein:C221T(S74F)) 119 0.093 1 0.001 2 0.002 2 0.002 4 0.093 0.005 0.098
25614 RATG13 C25614T|(ORF3a_protein:C222T(S74S)) 48 0.037 1 0.001 1 0.001 1 0.001 1 0.001 1 0.001 6 0.037 0.005 0.041999999999999996
25888 T25888A|(ORF3a_protein:T496A(S166T)) 5 0.001 2 0.000 3 0.000 3 0.000 1 0.000 2 0.000 1 0.000 1 0.000 8 0.001 0.0 0.001
25933 G25933T|(ORF3a_protein:G541T(E181*)) 5 0.001 4 0.000 1 0.000 2 0.000 4 0.000 2 0.000 1 0.000 7 0.001 0.0 0.001
25935 A25935C|(ORF3a_protein:A543C(E181D)) 14 0.002 1 0.000 1 0.000 3 0.002 0.0 0.002
25946 A25946C|(ORF3a_protein:A554C(Q185P)) 5 0.001 4 0.000 1 0.000 2 0.000 2 0.000 3 0.000 6 0.001 0.0 0.001
25963 G25963T|(ORF3a_protein:G571T(E191*)) 5 0.001 2 0.000 2 0.000 3 0.000 2 0.000 3 0.000 3 0.000 7 0.001 0.0 0.001
ubiq 26060 C26060T|(ORF3a_protein:C668T(T223I)) 6 1.000 8 1.000 34 1.000 16 1.000 18 1.000 12 1.000 14 1.000 16 1.000 8 1.0 7.0 8.0
ubiq 26270 C26270T|(envelope_protein:C26T(T9I)) 158 1.000 208 0.986 253 0.996 159 0.994 141 0.979 210 0.991 136 0.986 253 0.996 8 1.0 6.928 7.928
ubiq 26577 C26577G|(membrane_glycoprotein:C55G(Q19E)) 3 1.000 4 1.000 6 1.000 6 1.000 7 1.000 3 0.750 3 1.000 7 1.0 5.75 6.75
ubiq 26610 A26610G|(membrane_glycoprotein:A88G(T30A)) 3 1.000 2 1.000 6 1.000 4 1.000 6 1.000 3 1.000 2 1.000 7 1.0 6.0 7.0
ubiq 26681 C26681T|(membrane_glycoprotein:C159T(F53F)) 75 1.000 202 0.995 220 1.000 140 0.993 143 1.000 136 1.000 110 1.000 178 1.000 8 1.0 6.9879999999999995 7.9879999999999995
ubiq 26709 G26709A|(membrane_glycoprotein:G187A(A63T)) 157 1.000 388 0.992 303 1.000 325 0.997 279 0.993 304 1.000 187 0.989 329 0.994 8 1.0 6.965 7.965
26801 C26801T|(membrane_glycoprotein:C279T(L93L)) 6 0.035 1 0.035 0 0.035
ubiq 26833 C26833T|(membrane_glycoprotein:C311T(A104V)) 17 1.000 38 1.000 59 1.000 20 1.000 20 1.000 28 1.000 13 1.000 39 1.000 8 1.0 7.0 8.0
ubiq 26858 C26858T|(membrane_glycoprotein:C336T(F112F)) 18 1.000 38 0.927 58 0.983 20 0.952 20 1.000 28 1.000 13 0.929 38 0.950 8 1.0 6.741 7.741
27065 G27065-27065del|(membrane_glycoprotein:543-543del(181fs)) 5 0.001 1 0.000 2 0.000 1 0.000 4 0.001 0.0 0.001
27216 T27216A|(ORF6_protein:T15A(V5V)) 5 0.004 1 0.000 1 0.000 1 0.000 1 0.000 1 0.000 6 0.004 0.0 0.004
27226 G27226C|(ORF6_protein:G25C(V9L)) 36 0.028 1 0.000 1 0.001 3 0.028 0.001 0.029
ubiq 27259 A27259C|(ORF6_protein:A58C(R20R)) 1281 0.996 3637 0.992 3250 0.997 2428 0.993 1936 0.994 2676 0.995 2145 0.994 2902 0.993 8 0.996 6.958 7.954000000000001
ubiq 27382 G27382C|(ORF6_protein:GAT181-183CTC(D61L)) 72 0.986 83 1.000 91 0.989 64 1.000 65 0.985 71 0.910 56 1.000 111 1.000 8 0.986 6.884 7.87
ubiq 27383 A27383T|(ORF6_protein:GAT181-183CTC(D61L)) 72 0.986 83 1.000 91 0.989 64 1.000 65 0.985 71 0.910 56 1.000 111 1.000 8 0.986 6.884 7.87
ubiq 27384 T27384C|(ORF6_protein:GAT181-183CTC(D61L)) 72 0.986 83 1.000 91 0.989 64 1.000 65 0.985 71 0.910 56 1.000 111 1.000 8 0.986 6.884 7.87
27507 AAC27507-27509del|(ORF7a_protein:GGAACA112-117GGAdel(GT38-39Gdel)) 75 0.039 1 0.039 0 0.039
ubiq 27807 C27807T|(ORF7b:C52T(L18L)) 1363 0.996 1728 0.989 2125 0.994 1435 0.994 1365 0.996 1937 0.992 1058 0.996 1377 0.991 8 0.996 6.952 7.948
ubiq 27810 T27810C|(ORF7b:T55C(F19L)) 1362 0.995 1734 0.993 1918 0.867 1326 0.918 1355 0.988 1939 0.993 1056 0.994 1346 0.954 8 0.995 6.707 7.702
27972 C27972T|(ORF8_protein:C79T(Q27*)) 201 0.046 9 0.001 9 0.001 3 0.001 5 0.001 4 0.000 4 0.001 3 0.000 8 0.046 0.005 0.051
27974 A27974C|(ORF8_protein:A81C(Q27H)) 115 0.026 1 0.000 4 0.000 1 0.000 2 0.000 1 0.000 1 0.000 7 0.026 0.0 0.026
28029 T28029A|(ORF8_protein:T136A(Y46N)) 6 0.001 5 0.000 4 0.000 3 0.000 2 0.000 1 0.000 1 0.000 7 0.001 0.0 0.001
28100 A28100C|(ORF8_protein:A207C(S69S)) 5 0.001 3 0.000 3 0.000 2 0.000 2 0.000 3 0.000 2 0.000 2 0.000 8 0.001 0.0 0.001
28106 T28106G|(ORF8_protein:T213G(I71M)) 5 0.001 2 0.000 1 0.000 1 0.000 1 0.000 5 0.001 0.0 0.001
28224 T28224A|(ORF8_protein:T331A(Y111N)) 17 0.001 21 0.000 8 0.000 12 0.000 11 0.000 13 0.000 12 0.000 7 0.000 8 0.001 0.0 0.001
28251 T28251G|(ORF8_protein:T358G(F120V)) 15 0.001 32 0.000 9 0.000 13 0.000 10 0.000 17 0.000 15 0.000 12 0.000 8 0.001 0.0 0.001
ubiq 28271 A28271T 26938 0.999 66257 0.998 36233 0.999 33226 0.999 33918 0.998 52701 0.998 33354 0.998 33919 0.998 8 0.999 6.9879999999999995 7.986999999999999
28292 C28292A|(nucleocapsid_phosphoprotein:C19A(Q7K)) 14 0.001 21 0.000 13 0.000 11 0.000 14 0.000 12 0.000 9 0.000 16 0.000 8 0.001 0.0 0.001
ubiq 28311 C28311T|(nucleocapsid_phosphoprotein:C38T(P13L)) 26819 0.995 66025 0.995 36116 0.996 33077 0.994 33797 0.995 52528 0.995 33207 0.994 33797 0.995 8 0.995 6.964 7.9590000000000005
ubiq 28362 GAGAACGCA28362-28370del|(nucleocapsid_phosphoprotein:GGAGAACGCAGT88-99GGTdel(GERS30-33Gdel)) 26758 0.994 65821 0.993 35999 0.991 32969 0.995 33695 0.993 51225 0.972 33182 0.994 33807 0.994 8 0.994 6.932 7.926
28384 A28384C|(nucleocapsid_phosphoprotein:A111C(S37S)) 22 0.001 2 0.000 3 0.000 2 0.000 4 0.000 3 0.000 3 0.000 7 0.001 0.0 0.001
28576 G28576T|(nucleocapsid_phosphoprotein:G303T(M101I)) 136 0.028 1 0.000 2 0.000 1 0.000 2 0.000 3 0.000 1 0.000 1 0.000 8 0.028 0.0 0.028
28599 A28599T|(nucleocapsid_phosphoprotein:A326T(Y109F)) 20 0.004 1 0.000 3 0.000 2 0.000 1 0.000 1 0.000 6 0.004 0.0 0.004
28628 G28628T|(nucleocapsid_phosphoprotein:G355T(A119S)) 152 0.031 4 0.000 1 0.000 1 0.000 2 0.000 1 0.000 6 0.031 0.0 0.031
28734 A28734C|(nucleocapsid_phosphoprotein:A461C(N154T)) 5 0.001 4 0.000 2 0.000 1 0.000 2 0.000 1 0.000 6 0.001 0.0 0.001
28737 C28737A|(nucleocapsid_phosphoprotein:C464A(A155D)) 5 0.001 4 0.000 4 0.000 3 0.000 2 0.000 4 0.000 1 0.000 1 0.000 8 0.001 0.0 0.001
28768 A28768T|(nucleocapsid_phosphoprotein:A495T(T165T)) 5 0.001 7 0.000 2 0.000 1 0.000 1 0.000 2 0.000 2 0.000 4 0.000 8 0.001 0.0 0.001
28779 A28779T|(nucleocapsid_phosphoprotein:A506T(K169I)) 5 0.001 9 0.000 5 0.000 6 0.000 4 0.000 6 0.000 2 0.000 5 0.000 8 0.001 0.0 0.001
28860 A28860C|(nucleocapsid_phosphoprotein:A587C(N196T)) 5 0.001 5 0.000 3 0.000 3 0.000 3 0.000 4 0.000 6 0.001 0.0 0.001
28868 C28868T|(nucleocapsid_phosphoprotein:C595T(P199S)) 371 0.040 14 0.001 8 0.001 6 0.000 3 0.000 8 0.000 6 0.001 5 0.000 8 0.04 0.003 0.043000000000000003
28879 T28879A|(nucleocapsid_phosphoprotein:T606A(S202R)) 6 0.001 2 0.000 2 0.000 4 0.000 4 0.000 1 0.000 2 0.000 7 0.001 0.0 0.001
28880 A28880T|(nucleocapsid_phosphoprotein:AGG607-609TAA(R203*)) 5 0.001 5 0.000 2 0.000 5 0.000 4 0.000 3 0.000 3 0.000 2 0.000 8 0.001 0.0 0.001
ubiq 28881 G28881A|(nucleocapsid_phosphoprotein:AGG607-609AAA(R203K)) 9253 0.990 19166 0.991 12042 0.988 13697 0.991 9233 0.991 16533 0.991 7204 0.991 11358 0.991 8 0.99 6.934 7.924
28881 G28881A|(nucleocapsid_phosphoprotein:AGG607-609TAA(R203*)) 5 0.001 5 0.000 2 0.000 5 0.000 4 0.000 3 0.000 3 0.000 2 0.000 8 0.001 0.0 0.001
ubiq 28882 G28882A|(nucleocapsid_phosphoprotein:AGG607-609AAA(R203K)) 9253 0.990 19166 0.991 12042 0.988 13697 0.991 9233 0.991 16533 0.991 7204 0.991 11358 0.991 8 0.99 6.934 7.924
28882 G28882A|(nucleocapsid_phosphoprotein:AGG607-609TAA(R203*)) 5 0.001 5 0.000 2 0.000 5 0.000 4 0.000 3 0.000 3 0.000 2 0.000 8 0.001 0.0 0.001
ubiq 28958 C28958A|(nucleocapsid_phosphoprotein:C685A(Q229K)) 387 0.982 1085 0.997 905 0.957 344 0.994 585 0.983 798 0.994 470 0.992 757 0.959 8 0.982 6.8759999999999994 7.858
29016 A29016C|(nucleocapsid_phosphoprotein:A743C(K248T)) 5 0.001 6 0.000 2 0.000 4 0.000 2 0.000 1 0.000 1 0.000 2 0.000 8 0.001 0.0 0.001
29031 A29031C|(nucleocapsid_phosphoprotein:A758C(E253A)) 7 0.001 7 0.000 4 0.000 5 0.000 2 0.000 1 0.000 4 0.000 7 0.001 0.0 0.001
29055 A29055C|(nucleocapsid_phosphoprotein:A782C(K261T)) 6 0.001 1 0.000 3 0.000 1 0.000 1 0.000 3 0.000 6 0.001 0.0 0.001
29072 G29072T|(nucleocapsid_phosphoprotein:G799T(A267S)) 8 0.001 7 0.000 7 0.000 5 0.000 1 0.000 3 0.000 2 0.000 3 0.000 8 0.001 0.0 0.001
29086 A29086C|(nucleocapsid_phosphoprotein:A813C(T271T)) 15 0.002 3 0.000 5 0.000 2 0.000 3 0.000 3 0.000 4 0.000 3 0.000 8 0.002 0.0 0.002
29091 C29091A|(nucleocapsid_phosphoprotein:C818A(A273D)) 6 0.001 9 0.000 6 0.000 3 0.000 5 0.000 2 0.000 3 0.000 3 0.000 8 0.001 0.0 0.001
29254 G29254C|(nucleocapsid_phosphoprotein:G981C(S327S)) 26 0.025 1 0.001 1 0.001 3 0.025 0.002 0.027000000000000003
linkedubiq 29510 A29510C|(nucleocapsid_phosphoprotein:A1237C(S413R)) 617 0.994 1547 0.993 2160 0.995 1250 0.994 847 0.991 1494 0.992 1116 0.988 1446 0.983 8 0.994 6.936 7.93
29513 GC29513-29514del|(nucleocapsid_phosphoprotein:1240-1241del(414fs)) 55 0.105 1 0.105 0 0.105
29535 C29535T 66 0.126 2 0.002 2 0.001 2 0.002 1 0.001 5 0.126 0.006 0.132
ubiq 29734 GAGGCCACGCGGAGTACGATCGAGTG29734-29759del 138 1.000 287 1.000 478 0.998 132 0.992 188 0.995 94 1.000 200 1.000 184 1.000 8 1.0 6.985 7.985