NY-2 - Complete Raw Mutation Data

Full TSV data with all sample columns and abundance information
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Complete Mutations Data

This table shows the complete data from the mutations.tsv file exactly as it appears in the source. Scroll horizontally to see all columns.

Unnamed: 0 Unnamed: 1 Unnamed: 2 Unnamed: 3 SRR15291304 Unnamed: 5 SRR15384049 Unnamed: 7 SRR15291307 Unnamed: 9 SRR15291309 Unnamed: 11 SRR15291310 Unnamed: 13 SRR15291312 Unnamed: 15 SRR15291313 Unnamed: 17 SRR15384041 Unnamed: 19 SRR15384042 Unnamed: 21 SRR15384044 Unnamed: 23 SRR15384045 Unnamed: 25 SRR15384046 Unnamed: 27 Unnamed: 28 Unnamed: 29 Unnamed: 30 Unnamed: 31 Unnamed: 32 Key Unnamed: 34
('2021-07-03/2021-07-04', 'NA') ('2021-07-11/2021-07-12', 'NA') ('2021-07-03/2021-07-04', 'NA') ('2021-07-03/2021-07-04', 'NA') ('2021-07-04/2021-07-05', 'NA') ('2021-07-04/2021-07-05', 'NA') ('2021-07-04/2021-07-05', 'NA') ('2021-07-11/2021-07-12', 'NA') ('2021-07-11/2021-07-12', 'NA') ('2021-07-11/2021-07-12', 'NA') ('2021-07-11/2021-07-12', 'NA') ('2021-07-11', 'NA') Cryptic Sewershed
Linked/Ubiquitous Position Flagged Sequences Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Total samples Positives Sum Negatives Sum Total Sum Non-Cryptic Sewershed
329 C329A|(ORF1ab_polyprotein:C64A(Q22K))|(ORF1a_polyprotein:C64A(Q22K)) 4538 0.271 4 0.007 2 0.003 11 0.003 4 0.278 0.006 0.284
1059 C1059T|(ORF1ab_polyprotein:C794T(T265I))|(ORF1a_polyprotein:C794T(T265I)) 11688 0.995 14577 0.676 2 1.671 0 1.671
1267 Delta C1267T|(ORF1ab_polyprotein:C1002T(G334G))|(ORF1a_polyprotein:C1002T(G334G)) 26 0.003 3120 0.255 5 0.001 3 0.258 0.001 0.259
1616 C1616A|(ORF1ab_polyprotein:C1351A(L451I))|(ORF1a_polyprotein:C1351A(L451I)) 3869 0.994 241 0.609 2 0.015 3 1.603 0.015 1.618
1898 C1898A|(ORF1ab_polyprotein:C1633A(R545R))|(ORF1a_polyprotein:C1633A(R545R)) 5485 0.76 175 0.105 4 0.005 3 0.865 0.005 0.87
2164 G2164T|(ORF1ab_polyprotein:G1899T(E633D))|(ORF1a_polyprotein:G1899T(E633D)) 12 0.001 1143 0.296 11 0.006 17 0.005 4 0.297 0.011 0.308
ubiq 3037 RATG13,Delta C3037T|(ORF1ab_polyprotein:C2772T(F924F))|(ORF1a_polyprotein:C2772T(F924F)) 672 0.996 1248 0.982 49 1 166 0.988 4 1.978 1.988 3.966
3849 G3849T|(ORF1ab_polyprotein:G3584T(S1195I))|(ORF1a_polyprotein:G3584T(S1195I)) 7960 0.812 120 0.992 34 0.001 24 0.001 4 1.804 0.002 1.806
4178 A4178C|(ORF1ab_polyprotein:A3913C(K1305Q))|(ORF1a_polyprotein:A3913C(K1305Q)) 4292 0.601 2005 0.991 7 0.011 3 1.592 0.011 1.603
4485 A4485G|(ORF1ab_polyprotein:A4220G(K1407R))|(ORF1a_polyprotein:A4220G(K1407R)) 1515 0.202 1761 0.362 2 0.564 0 0.564
4556 G4556A|(ORF1ab_polyprotein:G4291A(V1431I))|(ORF1a_polyprotein:G4291A(V1431I)) 740 0.14 1081 0.317 2 0.457 0 0.457
5178 C5178A|(ORF1ab_polyprotein:C4913A(T1638N))|(ORF1a_polyprotein:C4913A(T1638N)) 13 0.867 163 0.524 4 0.013 3 1.391 0.013 1.404
5648 RATG13 A5648C|(ORF1ab_polyprotein:A5383C(K1795Q))|(ORF1a_polyprotein:A5383C(K1795Q)) 1331 0.302 15273 0.974 32 0.001 83 0.001 3 0.005 5 1.276 0.007 1.283
5808 TAGACGGTGCTT5808-5819del|(ORF1ab_polyprotein:ATAGACGGTGCTTTA5542-5556ATAdel(IDGAL1848-1852Idel))|(ORF1a_polyprotein:ATAGACGGTGCTTTA5542-5556ATAdel(IDGAL1848-1852Idel)) 967 0.253 2767 0.179 2 0.432 0 0.432
5847 G5847T|(ORF1ab_polyprotein:G5582T(G1861V))|(ORF1a_polyprotein:G5582T(G1861V)) 9 0.002 3604 0.217 41 0.001 115 0.002 3 0.006 5 0.219 0.009 0.228
5941 T5941A|(ORF1ab_polyprotein:T5676A(I1892I))|(ORF1a_polyprotein:T5676A(I1892I)) 785 0.363 216 0.075 5 0.002 3 0.438 0.002 0.44
6156 A6156C|(ORF1ab_polyprotein:A5891C(N1964T))|(ORF1a_polyprotein:A5891C(N1964T)) 398 0.536 152 0.012 4 0.001 9 0.025 4 0.548 0.026 0.574
6328 A6328G|(ORF1ab_polyprotein:A6063G(T2021T))|(ORF1a_polyprotein:A6063G(T2021T)) 18240 0.993 2321 0.967 2 1.96 0 1.96
6358 G6358A|(ORF1ab_polyprotein:G6093A(E2031E))|(ORF1a_polyprotein:G6093A(E2031E)) 3324 0.157 1130 0.435 2 0.592 0 0.592
8296 T8296C|(ORF1ab_polyprotein:T8031C(Y2677Y))|(ORF1a_polyprotein:T8031C(Y2677Y)) 3914 0.974 12 0.923 2 1.897 0 1.897
9053 G9053T|(ORF1ab_polyprotein:G8788T(V2930L))|(ORF1a_polyprotein:G8788T(V2930L)) 15192 0.603 2802 0.454 2 1.057 0 1.057
9141 G9141A|(ORF1ab_polyprotein:G8876A(G2959D))|(ORF1a_polyprotein:G8876A(G2959D)) 16773 0.608 2742 0.436 37 0.001 62 0.001 4 1.044 0.002 1.046
9203 Delta G9203A|(ORF1ab_polyprotein:G8938A(D2980N))|(ORF1a_polyprotein:G8938A(D2980N)) 14499 0.578 2080 0.424 2 1.002 0 1.002
9976 T9976C|(ORF1ab_polyprotein:T9711C(A3237A))|(ORF1a_polyprotein:T9711C(A3237A)) 704 0.276 876 0.716 2 0.992 0 0.992
10422 C10422G|(ORF1ab_polyprotein:C10157G(S3386C))|(ORF1a_polyprotein:C10157G(S3386C)) 4266 0.998 2832 0.995 2 1.993 0 1.993
10775 C10775T|(ORF1ab_polyprotein:C10510T(P3504S))|(ORF1a_polyprotein:C10510T(P3504S)) 357 0.438 8 1 2 1.438 0 1.438
11974 T11974C|(ORF1ab_polyprotein:T11709C(D3903D))|(ORF1a_polyprotein:T11709C(D3903D)) 20289 0.637 19699 0.96 2 1.597 0 1.597
12067 G12067T|(ORF1ab_polyprotein:G11802T(M3934I))|(ORF1a_polyprotein:G11802T(M3934I)) 22115 0.681 21901 0.983 127 0.002 152 0.007 2 0.006 5 1.664 0.015 1.679
12190 T12190C|(ORF1ab_polyprotein:T11925C(V3975V))|(ORF1a_polyprotein:T11925C(V3975V)) 14723 0.631 11306 0.978 2 1.609 0 1.609
12596 C12596T|(ORF1ab_polyprotein:C12331T(L4111F))|(ORF1a_polyprotein:C12331T(L4111F)) 8898 0.48 3265 0.98 2 1.46 0 1.46
15911 ATGATT15911-15916del|(ORF1ab_polyprotein:GATGATTAT15646-15654GATdel(DDY5216-5218Ddel)) 4058 0.27 479 0.781 2 1.051 0 1.051
15961 G15961T|(ORF1ab_polyprotein:G15697T(G5233C)) 16 0.001 378 0.493 26 0.001 2 0.003 4 0.494 0.004 0.498
16295 TACG16295-16298del|(ORF1ab_polyprotein:16031-16034del(5344fs)) 295 0.319 1412 0.679 2 0.998 0 0.998
22599 G22599A|(surface_glycoprotein:G1037A(R346K)) 1398 0.994 2326 0.703 2 1.697 0 1.697
22676 RATG13 G22676A|(surface_glycoprotein:G1114A(A372T)) 1703 0.995 4435 0.713 2 1.708 0 1.708
22771 A22771C|(surface_glycoprotein:A1209C(R403S)) 646 0.359 1764 0.252 2 0.611 0 0.611
23039 C23039A|(surface_glycoprotein:C1477A(Q493K)) 7086 0.892 1888 0.955 46 0.001 32 0.001 4 1.847 0.002 1.849
23054 RATG13 C23054T|(surface_glycoprotein:CAA1492-1494TAC(Q498Y)) 7964 0.996 1912 0.988 2 1.984 0 1.984
23056 RATG13 A23056C|(surface_glycoprotein:CAA1492-1494TAC(Q498Y)) 7964 0.996 1912 0.989 2 1.985 0 1.985
23117 RATG13 C23117A|(surface_glycoprotein:C1555A(H519N)) 7628 0.989 1456 0.969 46 0.001 2 0.008 4 1.958 0.009 1.967
23277 C23277A|(surface_glycoprotein:C1715A(T572N)) 38225 0.994 60000 0.974 139 0.005 59 0.005 3 0.007 48 0.005 6 1.968 0.022 1.99
linkedubiq 23403 Delta A23403G|(surface_glycoprotein:A1841G(D614G)) 37465 0.995 57650 0.985 3 1 54531 0.994 22007 0.972 9647 0.985 358 0.989 22 0.957 7191 0.981 9 1.98 6.878 8.858
23406 T23406C|(surface_glycoprotein:T1844C(V615A)) 20877 0.518 36043 0.592 2 1.11 0 1.11
23525 C23525T|(surface_glycoprotein:C1963T(H655Y)) 1701 0.995 5085 0.768 2 1.763 0 1.763
23605 T23605A|(surface_glycoprotein:T2043A(P681P)) 3 0.002 2837 0.354 2 0.356 0 0.356
24044 C24044T|(surface_glycoprotein:C2482T(L828F)) 2128 0.721 528 0.985 2 1.706 0 1.706
24197 G24197A|(surface_glycoprotein:G2635A(A879T)) 5441 0.896 1942 0.477 2 1.373 0 1.373
24374 C24374T|(surface_glycoprotein:C2812T(L938F)) 6905 0.904 2236 0.509 2 1.413 0 1.413
24477 C24477T|(surface_glycoprotein:C2915T(A972V)) 2 0.001 309 0.45 3 0.002 3 0.451 0.002 0.453
25016 T25016C|(surface_glycoprotein:T3454C(L1152L)) 816 0.052 219 0.898 2 0.95 0 0.95
25019 G25019A|(surface_glycoprotein:G3457A(D1153N)) 11674 0.752 238 0.975 2 1.727 0 1.727
25056 A25056T|(surface_glycoprotein:A3494T(D1165V)) 1052 0.068 308 0.972 30 0.001 60 0.001 5 0.001 49 0.007 6 1.04 0.01 1.05
25116 G25116A|(surface_glycoprotein:G3554A(R1185H)) 5266 0.623 242 0.992 2 1.615 0 1.615
25162 C25162A|(surface_glycoprotein:C3600A(L1200L)) 607 0.065 214 0.955 47 0.002 21 0.004 4 1.02 0.006 1.026
25163 C25163A|(surface_glycoprotein:C3601A(Q1201K)) 611 0.065 216 0.964 50 0.002 80 0.015 3 0.008 5 1.029 0.025 1.054
25235 A25235G|(surface_glycoprotein:A3673G(I1225V)) 6998 0.632 303 0.984 2 1.616 0 1.616
25420 RATG13 A25420C|(ORF3a_protein:A28C(I10L)) 9654 0.99 21149 0.693 38 0.005 222 0.017 4 0.012 18 0.013 6 1.683 0.047 1.73
25947 G25947C|(ORF3a_protein:G555C(Q185H)) 3044 0.628 2 0.002 2 0.63 0 0.63
25979 G25979A|(ORF3a_protein:GGA586-588GAC(G196D)) 3871 0.691 282 0.291 2 0.982 0 0.982
25980 A25980C|(ORF3a_protein:GGA586-588GAC(G196D)) 3871 0.691 282 0.291 2 0.982 0 0.982
25991 G25991A|(ORF3a_protein:G599A(C200Y)) 4574 0.695 347 0.287 2 0.982 0 0.982
26047 T26047G|(ORF3a_protein:T655G(L219V)) 6106 0.659 1693 0.955 38 0.002 44 0.001 7 0.008 5 1.614 0.011 1.625
26125 C26125A|(ORF3a_protein:C733A(Q245K)) 4685 0.497 1655 0.986 178 0.008 254 0.008 54 0.074 5 1.483 0.09 1.573
27322 T27322C|(ORF6_protein:T121C(S41P)) 12566 0.421 8114 0.653 2 1.074 0 1.074
27383 ATTA27383-27386del|(ORF6_protein:182-185del(61fs)) 14585 0.392 4484 0.298 2 0.69 0 0.69
28272 A28272T 26502 0.724 32175 0.969 78 0.003 2 0.003 5 0.001 13 0.002 6 1.693 0.009 1.702
28321 G28321A|(nucleocapsid_phosphoprotein:G48A(T16T)) 23156 0.654 27914 0.974 2 1.628 0 1.628
28936 G28936T|(nucleocapsid_phosphoprotein:G663T(L221F)) 228 0.323 72 0.735 2 0.002 3 1.058 0.002 1.06
29738 CCACGCGGAGTACGATCGAGTGT29738-29760del 4787 0.605 6834 0.661 2 1.266 0 1.266