NY-5 - Complete Raw Mutation Data

Full TSV data with all sample columns and abundance information
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Complete Mutations Data

This table shows the complete data from the mutations.tsv file exactly as it appears in the source. Scroll horizontally to see all columns.

Unnamed: 0 Unnamed: 1 Unnamed: 2 Unnamed: 3 SRR24727534 Unnamed: 5 SRR25002315 Unnamed: 7 SRR25144798 Unnamed: 9 SRR25343341 Unnamed: 11 SRR25404393 Unnamed: 13 SRR25430619 Unnamed: 15 SRR24727417 Unnamed: 17 SRR24727521 Unnamed: 19 SRR25002360 Unnamed: 21 SRR25002484 Unnamed: 23 SRR25144794 Unnamed: 25 SRR25240966 Unnamed: 27 SRR25343229 Unnamed: 29 SRR25343395 Unnamed: 31 SRR25404389 Unnamed: 33 SRR25404390 Unnamed: 35 SRR25478792 Unnamed: 37 SRR25478870 Unnamed: 39 Unnamed: 40 Unnamed: 41 Unnamed: 42 Unnamed: 43 Unnamed: 44 Key Unnamed: 46
('2023-05-14/2023-05-15', '684569.0') ('2023-06-11/2023-06-12', '684569.0') ('2023-06-20/2023-06-21', '684569.0') ('2023-07-09/2023-07-10', '684569.0') ('2023-07-04/2023-07-05', '684569.0') ('2023-07-16/2023-07-17', '684569.0') ('2023-05-14/2023-05-15', '192050.0') ('2023-05-14/2023-05-15', '1068012.0') ('2023-06-11/2023-06-12', '596326.0') ('2023-06-11/2023-06-12', '588772.0') ('2023-06-20/2023-06-21', '1068012.0') ('2023-06-20/2023-06-21', '848328.0') ('2023-07-09/2023-07-10', '410812.0') ('2023-07-09/2023-07-10', '283428.0') ('2023-07-04/2023-07-05', '410812.0') ('2023-07-04/2023-07-05', '283428.0') ('2023-07-16/2023-07-17', '410812.0') ('2023-07-16/2023-07-17', '588772.0') Cryptic Sewershed
Linked/Ubiquitous Position Flagged Sequences Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Total samples Positives Sum Negatives Sum Total Sum Non-Cryptic Sewershed
164 CGAGTAAC164-171del 1410 0.381 12 1 2 1.381 0 1.381
173 C173G 1410 0.363 12 1 2 1.363 0 1.363
186 C186T 63 0.001 71 0.001 38 1 11 0.001 7 0.001 38 0.002 8 0.001 7 1.002 0.005 1.007
213 G213A 6 0.001 65 0.001 38265 0.642 11 0.001 7 0.001 30 0.001 6 0.644 0.003 0.647
285 GTTTCAACGA285-294del|(ORF1ab_polyprotein:20-29del(7fs))|(ORF1a_polyprotein:20-29del(7fs)) 1581 0.384 12107 0.369 54099 0.996 37 1 4 2.749 0 2.749
306 T306C|(ORF1ab_polyprotein:T41C(V14A))|(ORF1a_polyprotein:T41C(V14A)) 12120 0.997 54198 0.998 2 1.995 0 1.995
632 C632T|(ORF1ab_polyprotein:C367T(L123F))|(ORF1a_polyprotein:C367T(L123F)) 2 0.667 86 0.851 2 1.518 0 1.518
ubiq 670 T670G|(ORF1ab_polyprotein:T405G(S135R))|(ORF1a_polyprotein:T405G(S135R)) 211232 0.998 108014 0.996 14868 0.997 75100 0.998 30778 0.997 99196 0.998 141904 0.998 139629 0.835 23606 0.997 131469 0.997 50351 0.997 12151 0.998 79554 0.998 20773 0.998 48151 0.996 5599 0.998 257590 0.997 141059 0.998 18 5.984 11.807 17.791
1616 C1616A|(ORF1ab_polyprotein:C1351A(L451I))|(ORF1a_polyprotein:C1351A(L451I)) 8543 0.144 11125 0.266 15244 0.245 29 0.003 1530 0.304 5 0.962 0 0.962
2189 C2189T|(ORF1ab_polyprotein:C1924T(L642F))|(ORF1a_polyprotein:C1924T(L642F)) 13295 0.28 8650 0.999 2 1.279 0 1.279
3740 RATG13 A3740G|(ORF1ab_polyprotein:A3475G(I1159V))|(ORF1a_polyprotein:A3475G(I1159V)) 1635 0.258 4947 0.594 2 0.852 0 0.852
4182 C4182A|(ORF1ab_polyprotein:C3917A(A1306D))|(ORF1a_polyprotein:C3917A(A1306D)) 156 0.001 297 0.001 9335 0.434 282 0.001 26 0.001 59 0.001 243 0.002 238 0.001 8 0.436 0.006 0.442
linked 4321 C4321T|(ORF1ab_polyprotein:C4056T(A1352A))|(ORF1a_polyprotein:C4056T(A1352A)) 209788 0.994 57964 0.575 6688 0.992 138748 0.662 48980 0.995 188461 0.994 86938 0.994 15501 0.993 231446 0.993 29414 0.995 19546 0.995 37747 0.993 29162 0.994 85947 0.991 1595 0.996 118350 0.993 139742 0.994 17 4.218 11.925 16.143
4331 C4331T|(ORF1ab_polyprotein:C4066T(L1356L))|(ORF1a_polyprotein:C4066T(L1356L)) 2003 0.287 13273 0.062 2 0.349 0 0.349
4364 A4364C|(ORF1ab_polyprotein:A4099C(I1367L))|(ORF1a_polyprotein:A4099C(I1367L)) 550 0.003 108 0.001 10 0.001 41712 0.217 7997 0.432 216 0.001 137 0.002 253 0.003 115 0.001 9 0.654 0.007 0.661
4380 C4380G|(ORF1ab_polyprotein:C4115G(S1372C))|(ORF1a_polyprotein:C4115G(S1372C)) 56820 0.411 28569 0.099 14541 0.567 3 1.077 0 1.077
4442 RATG13 G4442A|(ORF1ab_polyprotein:G4177A(V1393M))|(ORF1a_polyprotein:G4177A(V1393M)) 269 0.002 9486 0.417 2 0.419 0 0.419
4452 A4452G|(ORF1ab_polyprotein:A4187G(K1396R))|(ORF1a_polyprotein:A4187G(K1396R)) 280 0.003 9215 0.416 2 0.419 0 0.419
4486 G4486T|(ORF1ab_polyprotein:G4221T(K1407N))|(ORF1a_polyprotein:G4221T(K1407N)) 12 0.002 629 0.165 11 0.002 3917 0.187 4168 0.503 5 0.002 41 0.001 19 0.002 4 0.001 25 0.002 19 0.002 5 0.003 45 0.002 20 0.002 3 0.003 156 0.002 19 0.002 17 0.861 0.022 0.883
4519 T4519C|(ORF1ab_polyprotein:T4254C(Y1418Y))|(ORF1a_polyprotein:T4254C(Y1418Y)) 4592 0.186 2196 0.219 2 0.405 0 0.405
4524 C4524T|(ORF1ab_polyprotein:C4259T(A1420V))|(ORF1a_polyprotein:C4259T(A1420V)) 674 0.15 2718 0.267 2 0.417 0 0.417
4582 C4582T|(ORF1ab_polyprotein:C4317T(N1439N))|(ORF1a_polyprotein:C4317T(N1439N)) 613 0.151 3944 0.185 4 0.001 13 0.001 2 0.001 28 0.001 6 0.336999999999999 0.003 0.339999999999999
4938 C4938A|(ORF1ab_polyprotein:C4673A(T1558K))|(ORF1a_polyprotein:C4673A(T1558K)) 16923 0.104 3312 0.248 2 0.352 0 0.352
5600 RATG13 T5600C|(ORF1ab_polyprotein:T5335C(F1779L))|(ORF1a_polyprotein:T5335C(F1779L)) 44796 0.275 3600 0.148 2 0.423 0 0.423
5648 RATG13 A5648C|(ORF1ab_polyprotein:A5383C(K1795Q))|(ORF1a_polyprotein:A5383C(K1795Q)) 44700 0.271 3972 0.146 2 0.417 0 0.417
6133 A6133G|(ORF1ab_polyprotein:A5868G(K1956K))|(ORF1a_polyprotein:A5868G(K1956K)) 14798 0.262 85269 0.562 2 0.824 0 0.824
6358 G6358A|(ORF1ab_polyprotein:G6093A(E2031E))|(ORF1a_polyprotein:G6093A(E2031E)) 2692 0.013 18358 0.212 41622 0.373 10154 0.315 4 0.913 0 0.913
6513 GTT6513-6515del|(ORF1ab_polyprotein:AGTTTA6247-6252ATAdel(SL2083-2084Idel))|(ORF1a_polyprotein:AGTTTA6247-6252ATAdel(SL2083-2084Idel)) 84823 0.517 17474 0.221 40337 0.387 14962 0.526 4 1.651 0 1.651
6593 C6593A|(ORF1ab_polyprotein:C6328A(P2110T))|(ORF1a_polyprotein:C6328A(P2110T)) 3 0.004 12 0.001 2 0.333 4 0.005 4 0.338 0.005 0.343
6613 A6613T|(ORF1ab_polyprotein:A6348T(V2116V))|(ORF1a_polyprotein:A6348T(V2116V)) 793 0.991 3050 0.219 2 1.21 0 1.21
6730 RATG13 C6730T|(ORF1ab_polyprotein:C6465T(N2155N))|(ORF1a_polyprotein:C6465T(N2155N)) 822 0.994 5050 0.372 2 1.366 0 1.366
6851 A6851C|(ORF1ab_polyprotein:A6586C(T2196P))|(ORF1a_polyprotein:A6586C(T2196P)) 1467 0.648 2943 0.214 4 0.8 3 1.662 0 1.662
7124 C7124T|(ORF1ab_polyprotein:C6859T(P2287S))|(ORF1a_polyprotein:C6859T(P2287S)) 3514 0.997 10 1 2 1.99699999999999 0 1.99699999999999
7341 T7341C|(ORF1ab_polyprotein:T7076C(I2359T))|(ORF1a_polyprotein:T7076C(I2359T)) 271 0.706 77 0.196 68 0.157 120 0.345 132 1 5 2.404 0 2.404
8010 A8010G|(ORF1ab_polyprotein:A7745G(D2582G))|(ORF1a_polyprotein:A7745G(D2582G)) 9571 0.335 3849 0.191 2664 0.313 3 0.839 0 0.839
8039 G8039A|(ORF1ab_polyprotein:G7774A(D2592N))|(ORF1a_polyprotein:G7774A(D2592N)) 1102 0.127 2449 0.287 2 0.414 0 0.414
8393 G8393A|(ORF1ab_polyprotein:G8128A(A2710T))|(ORF1a_polyprotein:G8128A(A2710T)) 89109 0.534 62026 0.445 67663 0.176 3 1.155 0 1.155
8841 C8841T|(ORF1ab_polyprotein:C8576T(T2859I))|(ORF1a_polyprotein:C8576T(T2859I)) 2807 0.634 257 0.352 122 0.301 408 0.174 4 1.46099999999999 0 1.46099999999999
8843 A8843G|(ORF1ab_polyprotein:A8578G(R2860G))|(ORF1a_polyprotein:A8578G(R2860G)) 2810 0.634 259 0.356 121 0.3 408 0.174 4 1.464 0 1.464
9120 C9120T|(ORF1ab_polyprotein:C8855T(T2952I))|(ORF1a_polyprotein:C8855T(T2952I)) 2922 0.786 814 0.728 2 0.001 3 1.514 0.001 1.515
ubiq 10198 C10198T|(ORF1ab_polyprotein:C9933T(D3311D))|(ORF1a_polyprotein:C9933T(D3311D)) 594 0.997 321 0.761 2660 0.995 218 1 108 1 685 1 133 0.985 509 0.992 538 0.998 3035 0.996 77 1 693 0.999 288 1 273 0.996 21 1 2722 0.995 1443 0.997 17 5.753 10.958 16.711
10279 RATG13 C10279T|(ORF1ab_polyprotein:C10014T(L3338L))|(ORF1a_polyprotein:C10014T(L3338L)) 9864 0.25 3265 0.137 3468 0.125 54 0.01 2387 0.049 5 0.571 0 0.571
10287 T10287C|(ORF1ab_polyprotein:T10022C(I3341T))|(ORF1a_polyprotein:T10022C(I3341T)) 16174 0.366 4748 0.171 3892 0.124 519 0.085 2736 0.05 5 0.796 0 0.796
10741 RATG13 C10741T|(ORF1ab_polyprotein:C10476T(D3492D))|(ORF1a_polyprotein:C10476T(D3492D)) 3433 0.257 9984 0.256 8544 0.136 2634 0.23 4 0.879 0 0.879
10776 C10776T|(ORF1ab_polyprotein:C10511T(P3504L))|(ORF1a_polyprotein:C10511T(P3504L)) 2769 0.26 7817 0.259 7133 0.143 2091 0.229 4 0.891 0 0.891
11081 RATG13 T11081G|(ORF1ab_polyprotein:T10816G(L3606V))|(ORF1a_polyprotein:T10816G(L3606V)) 24965 0.994 10 0.002 2 0.996 0 0.996
11249 C11249T|(ORF1ab_polyprotein:C10984T(R3662C))|(ORF1a_polyprotein:C10984T(R3662C)) 47 0.002 1345 0.991 18 0.002 2 0.003 14 0.002 61 0.002 30 0.002 5 0.001 8 0.002 20 0.002 37 0.001 17 0.001 12 0.998 0.013 1.011
12854 C12854T|(ORF1ab_polyprotein:C12589T(P4197S))|(ORF1a_polyprotein:C12589T(P4197S)) 22950 0.421 2721 0.193 5326 0.277 1152 0.307 4 1.198 0 1.198
15494 C15494T|(ORF1ab_polyprotein:C15230T(A5077V)) 9831 0.997 9 0.001 2 0.002 7 0.001 5 0.003 28 0.001 38 0.001 7 1.001 0.005 1.00599999999999
16008 T16008G|(ORF1ab_polyprotein:T15744G(I5248M)) 1895 0.156 850 0.037 400 0.041 966 0.045 509 0.235 5 0.514 0 0.514
18565 A18565G|(ORF1ab_polyprotein:A18301G(N6101D)) 47422 0.172 19748 0.142 22223 0.241 32941 0.11 4 0.664999999999999 0 0.664999999999999
20304 A20304G|(ORF1ab_polyprotein:A20040G(E6680E)) 2302 0.202 280 0.226 1880 0.235 3692 0.314 537 0.199 5 1.176 0 1.176
20408 T20408G|(ORF1ab_polyprotein:T20144G(F6715C)) 121 0.154 882 0.187 1396 0.36 216 0.174 4 0.875 0 0.875
ubiq 21810 T21810C|(surface_glycoprotein:T248C(V83A)) 16630 0.996 10297 0.994 83150 0.941 20229 0.994 5699 0.996 40648 0.997 51695 0.996 24986 0.995 42173 0.77 69820 0.996 1718 0.995 45287 0.995 12629 0.995 83967 0.994 20475 0.995 15 5.918 8.731 14.649
ubiq 22317 G22317T|(surface_glycoprotein:G755T(G252V)) 6784 0.993 5044 0.995 1212 0.804 27463 0.995 4913 0.998 4467 0.997 24906 0.997 46125 0.996 2 0.003 15143 0.995 7233 0.997 37903 0.997 1687 0.995 20186 0.996 16892 0.84 15 5.782 7.816 13.5979999999999
22776 A22776G|(surface_glycoprotein:A1214G(D405G)) 6936 0.28 4333 0.129 1016 0.105 4248 0.155 159 0.037 2898 0.283 6 0.989 0 0.989
22778 G22778C|(surface_glycoprotein:G1216C(E406Q)) 6936 0.277 4344 0.129 1015 0.104 4256 0.154 160 0.037 2919 0.284 6 0.985 0 0.985
linkedubiq 22786 A22786C|(surface_glycoprotein:A1224C(R408S)) 29914 0.995 37711 0.994 11162 0.996 31733 0.995 4643 0.995 12342 0.995 15516 0.994 44464 0.995 783 0.996 25788 0.994 15678 0.996 3356 0.996 35504 0.994 4692 0.994 11509 0.995 67599 0.995 30329 0.994 17 5.97 10.943 16.913
22799 G22799A|(surface_glycoprotein:GGG1237-1239AAG(G413K)) 13382 0.351 347 0.057 5767 0.367 3 0.775 0 0.775
22799 G22799A|(surface_glycoprotein:GGG1237-1239ATG(G413M)) 8522 0.184 2552 0.182 9580 0.23 3 0.596 0 0.596
22800 G22800A|(surface_glycoprotein:GGG1237-1239AAG(G413K)) 13382 0.351 347 0.057 5767 0.366 3 0.774 0 0.774
22800 G22800T|(surface_glycoprotein:GGG1237-1239ATG(G413M)) 8522 0.183 2552 0.182 9580 0.23 3 0.595 0 0.595
22812 A22812C|(surface_glycoprotein:A1250C(K417T)) 15290 0.364 10197 0.2 3310 0.207 11357 0.247 379 0.057 6447 0.374 6 1.449 0 1.449
22879 C22879A|(surface_glycoprotein:C1317A(N439K)) 2438 0.052 256 0.035 4516 0.271 8 0.002 99 0.001 5 0.358 0.003 0.361
linked 22882 T22882G|(surface_glycoprotein:T1320G(N440K)) 44078 0.991 45190 0.992 16017 0.992 45507 0.996 6741 0.958 11763 0.721 23402 0.994 66918 0.995 34493 0.992 26564 0.996 4865 0.994 42903 0.938 7254 0.995 16461 0.99 83361 0.996 43338 0.995 16 5.65 9.885 15.535
22896 T22896C|(surface_glycoprotein:T1334C(V445A)) 10582 0.271 9240 0.209 2010 0.13 6920 0.164 185 0.028 3113 0.215 6 1.017 0 1.017
22901 G22901T|(surface_glycoprotein:G1339T(G447C)) 10635 0.244 1782 0.035 1775 0.098 6523 0.137 189 0.025 3126 0.193 74 0.001 52 0.001 9 0.002 21 0.001 53 0.001 11 0.732 0.006 0.738
linked 22917 Delta T22917G|(surface_glycoprotein:T1355G(L452R)) 8898 0.194 6941 0.13 1067 0.057 4859 0.096 5379 0.126 1228 0.196 2464 0.121 7 0.477 0.443 0.92
22920 A22920T|(surface_glycoprotein:A1358T(Y453F)) 8889 0.187 6969 0.125 1077 0.056 4881 0.093 141 0.016 2456 0.137 6 0.614 0 0.614
linked 22927 G22927T|(surface_glycoprotein:G1365T(L455F)) 8114 0.178 6785 0.125 1033 0.053 4774 0.093 87 0.001 56 0.001 41 0.001 12 0.001 2606 0.127 9 0.449 0.131 0.58
22928 T22928G|(surface_glycoprotein:T1366G(F456V)) 8080 0.178 1102 0.02 1021 0.053 4736 0.092 4 0.342999999999999 0 0.342999999999999
22942 T22942A|(surface_glycoprotein:T1380A(N460K)) 7692 0.169 6683 0.124 1078 0.055 4680 0.089 118 0.013 2392 0.136 6 0.586 0 0.586
22971 C22971A|(surface_glycoprotein:C1409A(T470N)) 7012 0.173 5795 0.121 101 0.013 2287 0.147 4 0.453999999999999 0 0.453999999999999
22976 A22976C|(surface_glycoprotein:A1414C(I472L)) 7012 0.174 5373 0.114 1033 0.062 4338 0.099 98 0.013 2293 0.149 6 0.611 0 0.611
22991 A22991G|(surface_glycoprotein:AGC1429-1431GAC(S477D)) 6017 0.163 3408 0.083 721 0.049 3667 0.094 102 0.015 2157 0.153 6 0.557 0 0.557
22992 G22992A|(surface_glycoprotein:AGC1429-1431GAC(S477D)) 6017 0.184 3408 0.095 721 0.057 3667 0.109 102 0.017 2157 0.171 6 0.633 0 0.633
linked 22995 RATG13,Delta C22995A|(surface_glycoprotein:C1433A(T478K)) 15321 0.47 21239 0.592 9325 0.74 3676 0.109 2505 0.412 8618 0.683 21864 0.997 47595 0.771 31429 0.996 9211 0.396 2032 0.429 5733 0.137 881 0.151 9738 0.635 69335 0.979 33947 0.869 16 3.006 6.36 9.366
23009 G23009A|(surface_glycoprotein:G1447A(V483I)) 6285 0.208 3590 0.112 954 0.086 3765 0.121 112 0.021 2404 0.204 6 0.752 0 0.752
linkedubiq 23013 A23013C|(surface_glycoprotein:A1451C(E484A)) 27848 0.997 29075 0.996 10097 0.996 28228 0.997 4891 0.996 10791 0.997 18486 0.996 51216 0.997 25684 0.996 18494 0.997 3874 0.997 33319 0.996 4711 0.997 12465 0.996 57088 0.997 31876 0.996 16 5.979 9.965 15.9439999999999
23018 T23018G|(surface_glycoprotein:T1456G(F486V)) 5790 0.222 3202 0.12 552 0.061 3332 0.126 114 0.024 5 0.553 0 0.553
23021 A23021G|(surface_glycoprotein:AAT1459-1461GGT(N487G)) 5784 0.209 3203 0.109 553 0.057 3330 0.116 114 0.022 2252 0.204 6 0.717 0 0.717
23022 A23022G|(surface_glycoprotein:AAT1459-1461GGT(N487G)) 5784 0.208 3203 0.108 553 0.056 3330 0.116 114 0.022 2252 0.204 6 0.714 0 0.714
linkedubiq 23031 T23031C|(surface_glycoprotein:T1469C(F490S)) 26096 0.998 27735 0.998 8795 0.998 26301 0.998 4466 0.999 10794 0.999 16425 0.999 46439 0.999 19230 0.81 16626 0.999 2486 0.703 29978 0.999 4179 0.999 8216 0.736 46781 0.999 29805 0.999 16 5.99 9.242 15.232
23039 C23039A|(surface_glycoprotein:CAA1477-1479ACA(Q493T)) 7413 0.267 1316 0.042 690 0.077 5188 0.179 4 0.565 0 0.565
23039 C23039G|(surface_glycoprotein:CAA1477-1479GTA(Q493V)) 3213 0.103 183 0.038 3965 0.322 3 0.463 0 0.463
23040 A23040C|(surface_glycoprotein:CAA1477-1479ACA(Q493T)) 7413 0.273 1316 0.043 690 0.079 5188 0.184 4 0.579 0 0.579
23040 A23040T|(surface_glycoprotein:CAA1477-1479GTA(Q493V)) 3213 0.105 183 0.039 3965 0.327 3 0.471 0 0.471
23042 T23042C|(surface_glycoprotein:T1480C(S494P)) 7455 0.296 4535 0.162 691 0.087 5199 0.204 182 0.043 3965 0.354 6 1.146 0 1.146
23048 G23048T|(surface_glycoprotein:G1486T(G496C)) 7645 0.305 1362 0.049 710 0.091 5258 0.209 191 0.046 4016 0.36 6 1.06 0 1.06
23054 C23054A|(surface_glycoprotein:C1492A(Q498K)) 189 0.047 4021 0.374 2 0.421 0 0.421
23055 A23055T|(surface_glycoprotein:A1493T(Q498L)) 7641 0.322 1355 0.052 710 0.097 5261 0.22 4 0.691 0 0.691
23063 RATG13 A23063G|(surface_glycoprotein:A1501G(N501D)) 7690 0.325 4643 0.177 709 0.098 5260 0.22 193 0.049 4029 0.379 6 1.248 0 1.248
23073 G23073A|(surface_glycoprotein:G1511A(G504D)) 7716 0.359 4584 0.191 697 0.111 5266 0.248 192 0.057 4034 0.414 6 1.38 0 1.38
23119 T23119G|(surface_glycoprotein:T1557G(H519Q)) 3695 0.035 13445 0.28 418 0.011 38169 0.496 82 0.008 22477 0.276 6 1.106 0 1.106
23141 C23141A|(surface_glycoprotein:C1579A(P527T)) 12348 0.306 16366 0.175 135 0.001 307 0.001 139 0.001 5 0.481 0.003 0.484
23149 G23149T|(surface_glycoprotein:G1587T(K529N)) 81 0.002 67 0.002 43025 0.529 15 0.001 141 0.001 193 0.001 216 0.002 90 0.001 26 0.001 105 0.001 55 0.001 47 0.001 373 0.001 186 0.001 14 0.534 0.011 0.545
23203 A23203G|(surface_glycoprotein:A1641G(T547T)) 9892 0.31 29606 0.492 21141 0.262 3 1.064 0 1.064
23236 G23236T|(surface_glycoprotein:G1674T(K558N)) 141 0.001 10353 0.3 53 0.001 32522 0.486 15 0.002 7844 0.088 157 0.001 186 0.001 217 0.002 69 0.001 24 0.001 105 0.001 46 0.001 6 0.002 357 0.001 177 0.001 16 0.878 0.012 0.89
23270 G23270A|(surface_glycoprotein:G1708A(A570T)) 20418 0.288 16371 0.181 74 0.001 3 0.469 0.001 0.47
23299 A23299G|(surface_glycoprotein:A1737G(P579P)) 10679 0.306 36273 0.504 78 0.008 3 0.818 0 0.818
linkedubiq 23403 Delta A23403G|(surface_glycoprotein:A1841G(D614G)) 92644 0.997 27864 0.995 32188 0.997 60667 0.997 8187 0.997 70970 0.998 80787 0.997 93629 0.996 417 0.993 96411 0.996 46001 0.997 15399 0.996 57564 0.997 34814 0.997 32159 0.997 2940 0.995 202831 0.996 98228 0.996 18 5.981 11.953 17.9339999999999
23422 C23422T|(surface_glycoprotein:C1860T(V620V)) 6590 0.33 31 0.002 111 0.019 3 0.351 0 0.351
23427 T23427G|(surface_glycoprotein:T1865G(V622G)) 5955 0.326 37 0.002 20444 0.523 109 0.021 13248 0.287 5 1.159 0 1.159
23487 T23487C|(surface_glycoprotein:T1925C(V642A)) 33 0.174 110 1 2 1.174 0 1.174
23595 C23595T|(surface_glycoprotein:C2033T(T678I)) 6453 0.997 2353 0.097 573 0.027 10928 0.947 39 1 2109 0.071 6 3.139 0 3.139
linkedubiq 23604 C23604A|(surface_glycoprotein:C2042A(P681H)) 12239 0.999 27488 0.998 23756 0.998 22979 0.998 27 1 32959 0.999 63084 0.999 46657 0.998 21522 0.998 52967 0.998 30846 0.998 4907 0.998 30398 0.999 221 1 36437 0.997 5 1 142546 0.998 47323 0.998 18 5.992 11.981 17.973
23689 T23689A|(surface_glycoprotein:T2127A(N709K)) 28986 0.996 9572 0.176 3891 0.079 51431 0.998 9312 0.143 65 0.001 161 0.001 78 0.001 8 2.392 0.003 2.395
23751 C23751T|(surface_glycoprotein:C2189T(S730F)) 23400 0.994 7376 0.158 37086 0.999 3 2.151 0 2.151
23843 A23843G|(surface_glycoprotein:A2281G(T761A)) 13410 0.304 7804 0.14 2 0.444 0 0.444
23897 C23897G|(surface_glycoprotein:C2335G(Q779E)) 8591 0.995 3824 0.177 2075 0.12 9746 0.657 3467 0.149 5 2.098 0 2.098
24842 G24842A|(surface_glycoprotein:G3280A(V1094I)) 279 0.173 1703 0.346 2 0.518999999999999 0 0.518999999999999
24872 G24872T|(surface_glycoprotein:G3310T(V1104L)) 4 0.002 3 0.002 1750 0.331 8 0.001 9 0.001 70 0.001 6 0.335 0.003 0.338
24893 G24893A|(surface_glycoprotein:G3331A(E1111K)) 235 0.153 1452 0.321 2 0.474 0 0.474
25020 A25020C|(surface_glycoprotein:A3458C(D1153A)) 271 0.167 1381 0.318 2 0.485 0 0.485
25094 A25094G|(surface_glycoprotein:A3532G(N1178D)) 192 0.127 815 0.264 2 0.391 0 0.391
25147 A25147C|(surface_glycoprotein:A3585C(E1195D)) 52 0.167 57 0.094 64 0.481 2 0.002 4 0.742 0.002 0.744
25162 C25162A|(surface_glycoprotein:C3600A(L1200L)) 46 0.167 105 0.164 58 0.446 2 0.002 5 0.004 2 0.001 6 0.777 0.007 0.784
25163 C25163A|(surface_glycoprotein:C3601A(Q1201K)) 49 0.179 103 0.16 2 0.003 58 0.446 3 0.003 5 0.003 6 0.788 0.006 0.794
25169 C25169T|(surface_glycoprotein:C3607T(L1203F)) 47 0.177 110 0.175 60 0.465 3 0.817 0 0.817
25254 C25254T|(surface_glycoprotein:C3692T(T1231I)) 55 0.209 134 0.193 68 0.412 3 0.814 0 0.814
25522 G25522A|(ORF3a_protein:G130A(G44R)) 25266 0.292 572 0.009 2872 0.169 102354 0.786 4934 0.464 9500 0.266 6 1.986 0 1.986
25563 G25563T|(ORF3a_protein:G171T(Q57H)) 24723 0.287 631 0.01 2732 0.158 100517 0.78 4948 0.462 9359 0.261 76 0.001 100 0.001 63 0.001 156 0.001 28 0.001 433 0.001 12 1.958 0.006 1.964
25691 G25691A|(ORF3a_protein:G299A(G100D)) 24447 0.291 632 0.009 2866 0.138 102649 0.778 4844 0.458 9706 0.265 31 0.002 2 0.003 8 1.939 0.005 1.944
25706 T25706A|(ORF3a_protein:T314A(F105Y)) 22203 0.279 567 0.009 2696 0.129 93370 0.767 4406 0.444 8945 0.255 6 1.883 0 1.883
25721 C25721T|(ORF3a_protein:C329T(A110V)) 16021 0.249 463 0.008 1824 0.097 73448 0.706 3661 0.426 5 1.486 0 1.486
25785 G25785T|(ORF3a_protein:G393T(W131C)) 2 0.001 1528 0.999 2 0.002 5 0.001 5 0.003 4 0.002 2 0.001 7 1.002 0.007 1.009
26155 GTTGTTAATCCAGTAATG26155-26172del|(ORF3a_protein:763-780del(VVNPVM255-260del)) 407 0.152 445 0.085 279 0.194 3 0.431 0 0.431
26416 G26416A|(envelope_protein:G172A(V58I)) 25019 0.988 4161 0.491 2 1.479 0 1.479
26428 G26428A|(envelope_protein:G184A(V62I)) 7090 0.995 14473 0.649 2 1.644 0 1.644
26434 A26434G|(envelope_protein:A190G(N64D)) 28509 0.993 4885 0.519 2 1.512 0 1.512
26470 T26470C|(envelope_protein:T226C(*76Q)) 32265 0.995 6373 0.546 2 1.541 0 1.541
26571 C26571G|(membrane_glycoprotein:C49G(L17V)) 36159 0.995 6929 0.995 6305 0.575 14907 0.654 4 3.219 0 3.219
26803 G26803A|(membrane_glycoprotein:G281A(S94N)) 111463 0.389 9708 0.242 6269 0.1 47 0.001 4 0.732 0 0.732
26816 T26816C|(membrane_glycoprotein:T294C(A98A)) 63327 0.203 11057 0.249 2 0.452 0 0.452
26847 A26847C|(membrane_glycoprotein:A325C(M109L)) 10836 0.246 13906 0.197 2 0.443 0 0.443
26895 C26895T|(membrane_glycoprotein:C373T(H125Y)) 87071 0.273 2259 0.044 7205 0.095 3 0.412 0 0.412
26934 C26934A|(membrane_glycoprotein:C412A(L138I)) 11803 0.311 4855 0.103 194 0.007 89 0.001 4 0.421 0.001 0.422
27005 C27005T|(membrane_glycoprotein:C483T(I161I)) 23255 0.205 39335 0.409 1614 0.105 50577 0.302 12867 0.702 5 1.72299999999999 0 1.72299999999999
27041 A27041G|(membrane_glycoprotein:A519G(S173S)) 34591 0.251 59471 0.513 2810 0.144 69652 0.342 16916 0.725 5 1.975 0 1.975
27121 G27121A|(membrane_glycoprotein:G599A(R200K)) 35223 0.258 30906 0.304 2868 0.158 19615 0.108 29 0.001 104 0.001 6 0.828 0.002 0.83
27148 A27148G|(membrane_glycoprotein:A626G(D209G)) 31213 0.228 48646 0.495 6217 0.339 60336 0.314 13890 0.637 5 2.013 0 2.013
27162 A27162G|(membrane_glycoprotein:A640G(S214G)) 15422 0.162 197 0.011 16625 0.09 2106 0.099 4 0.362 0 0.362
27190 AAGTGACAACAGATGTTTCATCTCGTTGACTTTC27190-27223del|(membrane_glycoprotein:fs/Splicing/Termination_disrupted)|(ORF6_protein:Start_disrupted) 9084 0.091 16976 0.297 1862 0.155 13269 0.099 4891 0.462 5 1.104 0 1.104
27262 ACTTTT27262-27267del|(ORF6_protein:61-66del(TF21-22del)) 13739 0.144 27304 0.385 1284 0.091 27926 0.196 7387 0.572 5 1.388 0 1.388
27274 T27274G|(ORF6_protein:TCC73-75GAA(S25E)) 2011 0.029 1183 0.094 10630 0.08 4339 0.347 4 0.549999999999999 0 0.549999999999999
27274 TCCATTTG27274-27281del|(ORF6_protein:73-80del(25fs)) 13642 0.157 24874 0.355 16659 0.125 2806 0.225 4 0.862 0 0.862
27275 C27275A|(ORF6_protein:TCC73-75GAA(S25E)) 2011 0.029 1183 0.094 10630 0.08 4339 0.347 4 0.549999999999999 0 0.549999999999999
27276 C27276A|(ORF6_protein:TCC73-75GAA(S25E)) 2011 0.029 1183 0.093 10630 0.08 4339 0.347 4 0.548999999999999 0 0.548999999999999
27278 TTTGG27278-27282del|(ORF6_protein:77-81del(26fs)) 2057 0.029 1190 0.094 10633 0.08 4350 0.348 4 0.550999999999999 0 0.550999999999999
27285 27285-insertG|(ORF6_protein:AAT82-84AAGGinsert(N28Kfsinsert)) 2042 0.029 1188 0.094 10609 0.08 4345 0.348 4 0.550999999999999 0 0.550999999999999
27285 T27285A|(ORF6_protein:T84A(N28K)) 13728 0.158 25067 0.358 17 0.001 16885 0.127 2851 0.228 5 0.872 0 0.872
27285 T27285G|(ORF6_protein:AAT82-84AAGGinsert(N28Kfsinsert)) 2042 0.029 1188 0.094 10609 0.08 4345 0.348 4 0.550999999999999 0 0.550999999999999
27286 C27286A|(ORF6_protein:CTT85-87AAG(L29K)) 13556 0.156 24690 0.351 16585 0.124 2776 0.222 4 0.853 0 0.853
27287 T27287A|(ORF6_protein:CTT85-87AAG(L29K)) 13556 0.156 24690 0.351 16585 0.124 2776 0.222 4 0.853 0 0.853
27287 TT27287-27288del|(ORF6_protein:86-87del(29fs)) 111 0.001 2406 0.034 1282 0.101 11100 0.083 4570 0.366 5 0.585 0 0.585
27288 T27288G|(ORF6_protein:CTT85-87AAG(L29K)) 13556 0.156 24690 0.351 16585 0.124 2776 0.222 4 0.853 0 0.853
27290 27290-insertC|(ORF6_protein:GAT88-90GCGTinsert(D30Afsinsert)) 13588 0.157 24775 0.353 16602 0.125 2787 0.223 4 0.858 0 0.858
27290 A27290G|(ORF6_protein:GAT88-90GCGTinsert(D30Afsinsert)) 13588 0.157 24775 0.353 16602 0.125 2787 0.223 4 0.858 0 0.858
27290 A27290T|(ORF6_protein:A89T(D30V)) 2303 0.033 1293 0.101 11176 0.084 4586 0.368 29 0.001 23 0.001 6 0.586 0.002 0.588
27308 TAAT27308-27311del|(ORF6_protein:107-110del(36fs)) 1727 0.142 15086 0.124 5869 0.424 3 0.69 0 0.69
27318 T27318G|(ORF6_protein:T117G(N39K)) 16416 0.238 30214 0.401 21803 0.187 3862 0.287 4 1.113 0 1.113
27375 G27375T|(ORF6_protein:G174T(M58I)) 19 0.002 7 0.001 2 0.5 6 0.003 16 0.002 12 0.002 8 0.001 69 0.002 8 0.503 0.01 0.513
28615 A28615G|(nucleocapsid_phosphoprotein:A342G(G114G)) 2 0.1 30115 0.495 75721 0.484 3 1.079 0 1.079
29206 T29206A|(nucleocapsid_phosphoprotein:T933A(A311A)) 31515 0.259 1035 0.157 35645 0.177 10474 0.183 4 0.776 0 0.776
29758 RATG13 T29758G 33429 0.248 135847 0.459 19745 0.346 45095 0.288 4 1.341 0 1.341