This table shows the complete data from the mutations.tsv file exactly as it appears in the source. Scroll horizontally to see all columns.
Unnamed: 0 | Unnamed: 1 | Unnamed: 2 | Unnamed: 3 | SRR24834711 | Unnamed: 5 | SRR24899644 | Unnamed: 7 | SRR25002405 | Unnamed: 9 | SRR25185984 | Unnamed: 11 | SRR24834665 | Unnamed: 13 | SRR24834723 | Unnamed: 15 | SRR24834783 | Unnamed: 17 | SRR24899698 | Unnamed: 19 | SRR24899699 | Unnamed: 21 | SRR24899703 | Unnamed: 23 | SRR25002413 | Unnamed: 25 | SRR25002458 | Unnamed: 27 | SRR25002481 | Unnamed: 29 | SRR25185903 | Unnamed: 31 | SRR25185970 | Unnamed: 33 | SRR25240910 | Unnamed: 35 | Unnamed: 36 | Unnamed: 37 | Unnamed: 38 | Unnamed: 39 | Unnamed: 40 | Key | Unnamed: 42 |
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('2023-05-21/2023-05-22', '728123.0') | ('2023-05-30/2023-05-31', '728123.0') | ('2023-06-11/2023-06-12', '728123.0') | ('2023-06-25/2023-06-26', '728123.0') | ('2023-05-21/2023-05-22', '198128.0') | ('2023-05-21/2023-05-22', '244918.0') | ('2023-05-21/2023-05-22', '192050.0') | ('2023-05-30/2023-05-31', '244918.0') | ('2023-05-30/2023-05-31', '198128.0') | ('2023-05-30/2023-05-31', '192050.0') | ('2023-06-11/2023-06-12', '198128.0') | ('2023-06-11/2023-06-12', '244918.0') | ('2023-06-11/2023-06-12', '192050.0') | ('2023-06-25/2023-06-26', '198128.0') | ('2023-06-25/2023-06-26', '283428.0') | ('2023-06-25/2023-06-26', '244918.0') | Cryptic Sewershed | ||||||||||||||||||||||||||
Linked/Ubiquitous | Position | Flagged | Sequences | Count | Abundance | Count | Abundance | Count | Abundance | Count | Abundance | Count | Abundance | Count | Abundance | Count | Abundance | Count | Abundance | Count | Abundance | Count | Abundance | Count | Abundance | Count | Abundance | Count | Abundance | Count | Abundance | Count | Abundance | Count | Abundance | Total samples | Positives Sum | Negatives Sum | Total Sum | Non-Cryptic Sewershed | ||
786 | T786A|(ORF1ab_polyprotein:T521A(M174K))|(ORF1a_polyprotein:T521A(M174K)) | 58385 | 0.144 | 5067 | 0.1 | 60 | 0.001 | 28 | 0.002 | 288 | 0.002 | 62 | 0.001 | 6 | 0.244 | 0.006 | 0.25 | |||||||||||||||||||||||||
913 | C913T|(ORF1ab_polyprotein:C648T(S216S))|(ORF1a_polyprotein:C648T(S216S)) | 42553 | 0.109 | 13449 | 0.037 | 29255 | 0.561 | 3 | 0.707 | 0 | 0.707 | |||||||||||||||||||||||||||||||
943 | RATG13 | G943A|(ORF1ab_polyprotein:G678A(R226R))|(ORF1a_polyprotein:G678A(R226R)) | 33406 | 0.085 | 17020 | 0.332 | 2 | 0.417 | 0 | 0.417 | ||||||||||||||||||||||||||||||||
1629 | A1629G|(ORF1ab_polyprotein:A1364G(Q455R))|(ORF1a_polyprotein:A1364G(Q455R)) | 3423 | 0.255 | 1842 | 0.22 | 1152 | 0.131 | 3 | 0.606 | 0 | 0.606 | |||||||||||||||||||||||||||||||
2110 | RATG13 | C2110T|(ORF1ab_polyprotein:C1845T(N615N))|(ORF1a_polyprotein:C1845T(N615N)) | 9215 | 0.103 | 9555 | 0.358 | 2 | 0.460999999999999 | 0 | 0.460999999999999 | ||||||||||||||||||||||||||||||||
ubiq | 3037 | RATG13,Delta | C3037T|(ORF1ab_polyprotein:C2772T(F924F))|(ORF1a_polyprotein:C2772T(F924F)) | 404 | 0.998 | 366 | 0.989 | 109 | 1 | 1095 | 0.998 | 3490 | 0.997 | 694 | 0.997 | 83 | 1 | 85 | 1 | 132 | 0.978 | 202 | 1 | 534 | 0.993 | 46 | 0.979 | 1151 | 0.993 | 1069 | 0.997 | 1068 | 0.992 | 15 | 3.985 | 10.926 | 14.911 | |||||
3267 | RATG13 | C3267T|(ORF1ab_polyprotein:C3002T(T1001I))|(ORF1a_polyprotein:C3002T(T1001I)) | 12 | 0.545 | 6 | 0.273 | 22 | 0.15 | 3 | 0.968 | 0 | 0.968 | ||||||||||||||||||||||||||||||
3547 | T3547A|(ORF1ab_polyprotein:T3282A(N1094K))|(ORF1a_polyprotein:T3282A(N1094K)) | 1847 | 0.387 | 13 | 0.002 | 9 | 0.004 | 18 | 0.014 | 5 | 0.001 | 4 | 0.002 | 3 | 0.005 | 2 | 0.002 | 11 | 0.003 | 2 | 0.001 | 10 | 0.407 | 0.014 | 0.421 | |||||||||||||||||
3828 | C3828T|(ORF1ab_polyprotein:C3563T(S1188L))|(ORF1a_polyprotein:C3563T(S1188L)) | 2731 | 0.231 | 152 | 0.038 | 2 | 0.269 | 0 | 0.269 | |||||||||||||||||||||||||||||||||
4084 | C4084T|(ORF1ab_polyprotein:C3819T(D1273D))|(ORF1a_polyprotein:C3819T(D1273D)) | 4506 | 0.447 | 340 | 0.317 | 2 | 0.764 | 0 | 0.764 | |||||||||||||||||||||||||||||||||
4233 | A4233G|(ORF1ab_polyprotein:A3968G(D1323G))|(ORF1a_polyprotein:A3968G(D1323G)) | 13668 | 0.249 | 2313 | 0.177 | 2 | 0.426 | 0 | 0.426 | |||||||||||||||||||||||||||||||||
4582 | C4582T|(ORF1ab_polyprotein:C4317T(N1439N))|(ORF1a_polyprotein:C4317T(N1439N)) | 1250 | 0.161 | 5384 | 0.36 | 2 | 0.002 | 9 | 0.002 | 4 | 0.521 | 0.004 | 0.525 | |||||||||||||||||||||||||||||
4893 | C4893T|(ORF1ab_polyprotein:C4628T(T1543I))|(ORF1a_polyprotein:C4628T(T1543I)) | 18315 | 0.176 | 4186 | 0.252 | 2 | 0.428 | 0 | 0.428 | |||||||||||||||||||||||||||||||||
5388 | C5388A|(ORF1ab_polyprotein:C5123A(A1708D))|(ORF1a_polyprotein:C5123A(A1708D)) | 8940 | 0.355 | 14330 | 0.338 | 4712 | 0.358 | 6 | 0.002 | 11 | 0.002 | 15 | 0.002 | 6 | 1.053 | 0.004 | 1.057 | |||||||||||||||||||||||||
5607 | A5607G|(ORF1ab_polyprotein:A5342G(K1781R))|(ORF1a_polyprotein:A5342G(K1781R)) | 12900 | 0.354 | 17774 | 0.341 | 6215 | 0.364 | 3 | 1.059 | 0 | 1.059 | |||||||||||||||||||||||||||||||
5648 | RATG13 | A5648C|(ORF1ab_polyprotein:A5383C(K1795Q))|(ORF1a_polyprotein:A5383C(K1795Q)) | 13452 | 0.353 | 19333 | 0.338 | 6527 | 0.36 | 19 | 0.002 | 51 | 0.004 | 5 | 1.051 | 0.006 | 1.057 | ||||||||||||||||||||||||||
7292 | T7292C|(ORF1ab_polyprotein:T7027C(L2343L))|(ORF1a_polyprotein:T7027C(L2343L)) | 163 | 0.836 | 40 | 0.091 | 37 | 0.204 | 3 | 1.131 | 0 | 1.131 | |||||||||||||||||||||||||||||||
8976 | A8976G|(ORF1ab_polyprotein:A8711G(E2904G))|(ORF1a_polyprotein:A8711G(E2904G)) | 179 | 0.18 | 41 | 0.169 | 2 | 0.349 | 0 | 0.349 | |||||||||||||||||||||||||||||||||
ubiq | 10447 | RATG13 | G10447A|(ORF1ab_polyprotein:G10182A(R3394R))|(ORF1a_polyprotein:G10182A(R3394R)) | 8283 | 0.996 | 90431 | 0.997 | 15482 | 0.995 | 5193 | 0.997 | 37855 | 0.997 | 21853 | 0.997 | 1536 | 0.999 | 1892 | 0.997 | 3003 | 0.99 | 11950 | 0.998 | 13796 | 0.996 | 7048 | 0.988 | 48147 | 0.997 | 11098 | 0.997 | 7447 | 0.998 | 34 | 1 | 16 | 3.985 | 11.954 | 15.939 | |||
ubiq | 10449 | C10449A|(ORF1ab_polyprotein:C10184A(P3395H))|(ORF1a_polyprotein:C10184A(P3395H)) | 8273 | 0.995 | 90437 | 0.997 | 15481 | 0.995 | 5197 | 0.998 | 37847 | 0.997 | 21854 | 0.997 | 1533 | 0.997 | 1891 | 0.995 | 2993 | 0.987 | 11951 | 0.997 | 13813 | 0.997 | 7070 | 0.991 | 48127 | 0.996 | 11098 | 0.997 | 7445 | 0.997 | 34 | 1 | 16 | 3.985 | 11.948 | 15.933 | ||||
ubiq | 11288 | TCTGGTTTT11288-11296del|(ORF1ab_polyprotein:11023-11031del(SGF3675-3677del))|(ORF1a_polyprotein:11023-11031del(SGF3675-3677del)) | 23718 | 0.998 | 25901 | 0.998 | 8151 | 0.997 | 7780 | 0.997 | 7497 | 0.997 | 1274 | 0.997 | 701 | 0.999 | 1446 | 0.998 | 302 | 0.993 | 2513 | 0.998 | 4019 | 0.997 | 679 | 0.987 | 2322 | 0.994 | 1795 | 0.998 | 2468 | 0.999 | 263 | 1 | 16 | 3.99 | 11.957 | 15.947 | ||||
13033 | T13033C|(ORF1ab_polyprotein:T12768C(N4256N))|(ORF1a_polyprotein:T12768C(N4256N)) | 411 | 0.14 | 481 | 0.218 | 2 | 0.358 | 0 | 0.358 | |||||||||||||||||||||||||||||||||
13951 | A13951G|(ORF1ab_polyprotein:A13687G(I4563V)) | 6325 | 0.166 | 2655 | 0.21 | 2 | 0.376 | 0 | 0.376 | |||||||||||||||||||||||||||||||||
ubiq | 14408 | Delta | C14408T|(ORF1ab_polyprotein:C14144T(P4715L)) | 2857 | 0.999 | 5872 | 0.998 | 1262 | 0.996 | 10255 | 0.998 | 8776 | 0.998 | 32 | 1 | 295 | 0.993 | 2247 | 0.998 | 2757 | 0.996 | 2913 | 1 | 5193 | 0.997 | 425 | 0.988 | 8197 | 0.998 | 71 | 1 | 2075 | 0.998 | 959 | 1 | 16 | 3.991 | 11.966 | 15.9569999999999 | |||
14676 | C14676T|(ORF1ab_polyprotein:C14412T(P4804P)) | 612 | 0.27 | 3 | 0.001 | 2 | 0.271 | 0 | 0.271 | |||||||||||||||||||||||||||||||||
15285 | G15285T|(ORF1ab_polyprotein:G15021T(M5007I)) | 5950 | 0.291 | 5405 | 0.167 | 7 | 0.001 | 23 | 0.001 | 9 | 0.001 | 2 | 0.001 | 7 | 0.001 | 6 | 0.001 | 2 | 0.002 | 9 | 0.459999999999999 | 0.006 | 0.465999999999999 | |||||||||||||||||||
16176 | T16176C|(ORF1ab_polyprotein:T15912C(T5304T)) | 8670 | 0.109 | 10741 | 0.583 | 4 | 0.002 | 3 | 0.692 | 0.002 | 0.694 | |||||||||||||||||||||||||||||||
16348 | T16348C|(ORF1ab_polyprotein:T16084C(S5362P)) | 6246 | 0.106 | 8352 | 0.584 | 2 | 0.69 | 0 | 0.69 | |||||||||||||||||||||||||||||||||
ubiq | 17410 | C17410T|(ORF1ab_polyprotein:C17146T(R5716C)) | 6681 | 0.997 | 33592 | 0.998 | 4982 | 0.866 | 9129 | 0.998 | 7344 | 0.997 | 10507 | 0.998 | 1754 | 0.997 | 2226 | 1 | 2710 | 0.99 | 2040 | 0.998 | 5337 | 0.996 | 6095 | 0.989 | 16701 | 0.997 | 2 | 1 | 3810 | 0.997 | 763 | 0.997 | 16 | 3.859 | 11.956 | 15.815 | ||||
ubiq | 17859 | T17859C|(ORF1ab_polyprotein:T17595C(Y5865Y)) | 148333 | 0.997 | 333906 | 0.998 | 17406 | 0.977 | 131963 | 0.997 | 81644 | 0.996 | 63918 | 0.997 | 25419 | 0.997 | 39544 | 0.998 | 25187 | 0.994 | 66037 | 0.997 | 43316 | 0.995 | 55282 | 0.994 | 110635 | 0.995 | 26338 | 0.996 | 69974 | 0.997 | 32877 | 0.997 | 16 | 3.969 | 11.953 | 15.9219999999999 | ||||
18318 | G18318T|(ORF1ab_polyprotein:G18054T(G6018G)) | 568 | 0.413 | 7 | 0.002 | 2 | 0.004 | 3 | 0.001 | 4 | 0.001 | 5 | 0.415 | 0.006 | 0.421 | |||||||||||||||||||||||||||
19869 | T19869C|(ORF1ab_polyprotein:T19605C(T6535T)) | 106 | 0.131 | 111 | 0.114 | 2 | 0.001 | 3 | 0.245 | 0.001 | 0.246 | |||||||||||||||||||||||||||||||
20407 | RATG13 | T20407C|(ORF1ab_polyprotein:T20143C(F6715L)) | 129 | 0.042 | 47 | 0.212 | 2 | 0.254 | 0 | 0.254 | ||||||||||||||||||||||||||||||||
ubiq | 21618 | C21618T|(surface_glycoprotein:C56T(T19I)) | 102812 | 0.998 | 66735 | 0.998 | 16250 | 0.997 | 26577 | 0.999 | 43839 | 0.998 | 12233 | 0.998 | 4548 | 0.895 | 9717 | 0.998 | 6809 | 0.994 | 14049 | 0.998 | 26475 | 0.998 | 10438 | 0.997 | 61150 | 0.996 | 5490 | 0.999 | 16632 | 0.998 | 4993 | 0.999 | 16 | 3.992 | 11.868 | 15.86 | ||||
ubiq | 21633 | TACCCCCTG21633-21641del|(surface_glycoprotein:TTACCCCCTGCA70-81TCAdel(LPPA24-27Sdel)) | 89254 | 0.997 | 59752 | 0.997 | 13336 | 0.997 | 24810 | 0.998 | 38014 | 0.997 | 11780 | 0.997 | 3806 | 0.875 | 9323 | 0.998 | 6595 | 0.988 | 12574 | 0.997 | 25099 | 0.995 | 10816 | 0.983 | 58545 | 0.995 | 4701 | 0.997 | 15390 | 0.996 | 5161 | 0.995 | 16 | 3.989 | 11.813 | 15.802 | ||||
ubiq | 21810 | T21810C|(surface_glycoprotein:T248C(V83A)) | 45193 | 0.996 | 36474 | 0.997 | 3605 | 0.994 | 23381 | 0.995 | 19463 | 0.995 | 12162 | 0.996 | 1294 | 0.996 | 5294 | 0.997 | 3366 | 0.989 | 6012 | 0.997 | 19351 | 0.993 | 11408 | 0.792 | 43280 | 0.994 | 2916 | 0.994 | 12679 | 0.996 | 6640 | 0.996 | 16 | 3.982 | 11.735 | 15.7169999999999 | ||||
21967 | TTG21967-21969del|(surface_glycoprotein:TTTTGT403-408TTTdel(FC135-136Fdel)) | 289 | 0.217 | 4125 | 0.39 | 2 | 0.607 | 0 | 0.607 | |||||||||||||||||||||||||||||||||
21976 | T21976G|(surface_glycoprotein:T414G(D138E)) | 286 | 0.212 | 4099 | 0.384 | 2 | 0.596 | 0 | 0.596 | |||||||||||||||||||||||||||||||||
21977 | C21977T|(surface_glycoprotein:C415T(P139S)) | 289 | 0.214 | 4122 | 0.387 | 2 | 0.601 | 0 | 0.601 | |||||||||||||||||||||||||||||||||
21980 | TTT21980-21982del|(surface_glycoprotein:418-420del(F140del)) | 289 | 0.21 | 4102 | 0.378 | 2 | 0.588 | 0 | 0.588 | |||||||||||||||||||||||||||||||||
linked | 21991 | TTA21991-21993del|(surface_glycoprotein:GTTTAT427-432GTTdel(VY143-144Vdel)) | 3326 | 0.948 | 6687 | 0.954 | 1176 | 0.922 | 9635 | 0.923 | 6174 | 0.956 | 7154 | 0.953 | 1664 | 0.95 | 8378 | 0.934 | 7072 | 0.905 | 4526 | 0.945 | 2788 | 0.953 | 11 | 3.747 | 6.596 | 10.343 | ||||||||||||||
22016 | T22016A|(surface_glycoprotein:T454A(W152R)) | 240 | 0.211 | 3406 | 0.378 | 8 | 0.001 | 3 | 0.589 | 0.001 | 0.59 | |||||||||||||||||||||||||||||||
22020 | TGG22020-22022del|(surface_glycoprotein:ATGGAA457-462AAAdel(ME153-154Kdel)) | 226 | 0.202 | 3281 | 0.368 | 2 | 0.57 | 0 | 0.57 | |||||||||||||||||||||||||||||||||
22034 | AGAGTT22034-22039del|(surface_glycoprotein:472-477del(RV158-159del)) | 192 | 0.188 | 2687 | 0.337 | 2 | 0.525 | 0 | 0.525 | |||||||||||||||||||||||||||||||||
22054 | T22054G|(surface_glycoprotein:T492G(N164K)) | 234 | 0.235 | 3618 | 0.42 | 19 | 0.003 | 4 | 0.001 | 4 | 0.655 | 0.004 | 0.659 | |||||||||||||||||||||||||||||
22079 | C22079A|(surface_glycoprotein:C517A(Q173K)) | 280 | 0.24 | 4638 | 0.422 | 2 | 0.001 | 9 | 0.001 | 5 | 0.001 | 5 | 0.661999999999999 | 0.003 | 0.664999999999999 | |||||||||||||||||||||||||||
22121 | AAA22121-22123del|(surface_glycoprotein:559-561del(K187del)) | 337 | 0.265 | 5584 | 0.473 | 2 | 0.738 | 0 | 0.738 | |||||||||||||||||||||||||||||||||
22132 | G22132T|(surface_glycoprotein:G570T(R190S)) | 7 | 0.002 | 360 | 0.28 | 5810 | 0.482 | 21 | 0.003 | 14 | 0.002 | 24 | 0.003 | 33 | 0.004 | 11 | 0.002 | 8 | 0.764 | 0.014 | 0.778 | |||||||||||||||||||||
22203 | G22203A|(surface_glycoprotein:G641A(R214H)) | 2253 | 0.125 | 5 | 0.001 | 566 | 0.21 | 4896 | 0.466 | 8 | 0.001 | 2 | 0.001 | 15 | 0.002 | 16 | 0.001 | 5 | 0.003 | 9 | 0.802 | 0.008 | 0.81 | |||||||||||||||||||
22238 | T22238G|(surface_glycoprotein:T676G(L226V)) | 3012 | 0.126 | 586 | 0.189 | 3561 | 0.504 | 16 | 0.007 | 12 | 0.002 | 145 | 0.014 | 25 | 0.003 | 4 | 0.001 | 6 | 0.004 | 2 | 0.003 | 10 | 0.819 | 0.034 | 0.853 | |||||||||||||||||
22582 | A22582T|(surface_glycoprotein:A1020T(E340D)) | 907 | 0.595 | 451 | 0.217 | 147 | 0.439 | 1056 | 0.996 | 2 | 0.005 | 5 | 2.247 | 0.005 | 2.252 | |||||||||||||||||||||||||||
linkedubiq | 22599 | RATG13 | G22599C|(surface_glycoprotein:G1037C(R346T)) | 1432 | 0.999 | 1968 | 0.997 | 332 | 0.997 | 1013 | 0.998 | 1531 | 0.998 | 438 | 0.995 | 121 | 1 | 296 | 0.997 | 10 | 1 | 685 | 0.996 | 551 | 0.993 | 409 | 0.995 | 363 | 1 | 80 | 1 | 14 | 3.991 | 9.974 | 13.965 | |||||||
22629 | A22629C|(surface_glycoprotein:A1067C(K356T)) | 883 | 0.562 | 449 | 0.205 | 150 | 0.427 | 1084 | 0.999 | 2 | 0.003 | 2 | 0.005 | 6 | 2.193 | 0.008 | 2.201 | |||||||||||||||||||||||||
22674 | CCG22674-22676del|(surface_glycoprotein:TCCGCA1111-1116TCAdel(SA371-372Sdel)) | 852 | 0.567 | 387 | 0.179 | 149 | 0.423 | 1011 | 0.997 | 4 | 2.166 | 0 | 2.166 | |||||||||||||||||||||||||||||
22690 | TTT22690-22692del|(surface_glycoprotein:ACTTTT1126-1131ACTdel(TF376-377Tdel)) | 862 | 0.556 | 395 | 0.178 | 153 | 0.415 | 1019 | 0.996 | 4 | 2.145 | 0 | 2.145 | |||||||||||||||||||||||||||||
22713 | C22713T|(surface_glycoprotein:C1151T(P384L)) | 801 | 0.566 | 323 | 0.164 | 127 | 0.399 | 827 | 0.999 | 4 | 2.128 | 0 | 2.128 | |||||||||||||||||||||||||||||
ubiq | 22786 | A22786C|(surface_glycoprotein:A1224C(R408S)) | 19126 | 0.964 | 36767 | 0.99 | 4830 | 0.891 | 18468 | 0.963 | 13105 | 0.995 | 10137 | 0.995 | 1952 | 0.993 | 3524 | 0.994 | 3672 | 0.995 | 5229 | 0.997 | 16922 | 0.994 | 2462 | 0.99 | 6784 | 0.995 | 454 | 1 | 5215 | 0.996 | 1647 | 0.996 | 16 | 3.808 | 11.94 | 15.748 | ||||
ubiq | 22813 | G22813T|(surface_glycoprotein:G1251T(K417N)) | 27095 | 0.98 | 51144 | 0.994 | 6879 | 0.903 | 27443 | 0.98 | 17878 | 0.998 | 14274 | 0.998 | 2700 | 0.996 | 4427 | 0.999 | 5025 | 0.986 | 7002 | 0.998 | 22528 | 0.995 | 3573 | 0.976 | 8933 | 0.996 | 662 | 1 | 7253 | 0.992 | 2263 | 0.995 | 16 | 3.857 | 11.929 | 15.786 | ||||
ubiq | 22882 | T22882G|(surface_glycoprotein:T1320G(N440K)) | 31304 | 0.996 | 56836 | 0.997 | 8290 | 0.993 | 35182 | 0.996 | 20163 | 0.996 | 16748 | 0.995 | 3036 | 0.996 | 3298 | 0.998 | 3234 | 0.984 | 6564 | 0.996 | 20934 | 0.993 | 3644 | 0.977 | 8068 | 0.991 | 853 | 0.996 | 8207 | 0.992 | 2415 | 0.991 | 16 | 3.982 | 11.905 | 15.887 | ||||
ubiq | 22895 | G22895C|(surface_glycoprotein:GTT1333-1335CCT(V445P)) | 30001 | 0.997 | 55129 | 0.998 | 7640 | 0.956 | 34309 | 0.996 | 19525 | 0.997 | 16262 | 0.997 | 2357 | 0.791 | 3035 | 0.999 | 2571 | 0.986 | 6216 | 0.998 | 19748 | 0.994 | 3376 | 0.984 | 7626 | 0.995 | 847 | 0.998 | 7948 | 0.993 | 2301 | 0.997 | 16 | 3.947 | 11.729 | 15.6759999999999 | ||||
ubiq | 22896 | T22896C|(surface_glycoprotein:GTT1333-1335CCT(V445P)) | 30001 | 0.997 | 55129 | 0.998 | 7640 | 0.956 | 34309 | 0.996 | 19525 | 0.997 | 16262 | 0.997 | 2357 | 0.791 | 3035 | 0.999 | 2571 | 0.986 | 6216 | 0.998 | 19748 | 0.994 | 3376 | 0.984 | 7626 | 0.995 | 847 | 0.998 | 7948 | 0.993 | 2301 | 0.997 | 16 | 3.947 | 11.729 | 15.6759999999999 | ||||
ubiq | 22898 | G22898A|(surface_glycoprotein:G1336A(G446S)) | 30013 | 0.997 | 55149 | 0.998 | 7642 | 0.956 | 34355 | 0.998 | 19537 | 0.998 | 16271 | 0.997 | 2969 | 0.997 | 3025 | 0.996 | 2589 | 0.993 | 6219 | 0.998 | 19791 | 0.997 | 3405 | 0.992 | 7636 | 0.996 | 847 | 0.998 | 7981 | 0.998 | 2307 | 0.999 | 16 | 3.949 | 11.959 | 15.908 | ||||
ubiq | 22942 | T22942G|(surface_glycoprotein:T1380G(N460K)) | 40526 | 0.997 | 76712 | 0.998 | 10678 | 0.992 | 48071 | 0.996 | 26231 | 0.997 | 21739 | 0.997 | 3999 | 0.997 | 4257 | 0.997 | 3299 | 0.983 | 8825 | 0.998 | 26976 | 0.995 | 4830 | 0.985 | 10456 | 0.995 | 1169 | 0.995 | 10593 | 0.997 | 3084 | 0.998 | 16 | 3.983 | 11.934 | 15.917 | ||||
ubiq | 22992 | G22992A|(surface_glycoprotein:G1430A(S477N)) | 27887 | 0.998 | 50955 | 0.999 | 7033 | 0.97 | 32837 | 0.999 | 17685 | 0.998 | 15097 | 0.998 | 2838 | 0.998 | 2938 | 0.999 | 1551 | 0.987 | 5830 | 0.999 | 18369 | 0.997 | 2956 | 0.99 | 7059 | 0.997 | 791 | 0.995 | 7405 | 0.997 | 2121 | 0.998 | 16 | 3.966 | 11.953 | 15.919 | ||||
ubiq | 23013 | A23013C|(surface_glycoprotein:A1451C(E484A)) | 22826 | 0.997 | 42558 | 0.998 | 5722 | 0.975 | 27412 | 0.997 | 14288 | 0.997 | 12433 | 0.997 | 2403 | 0.998 | 2337 | 0.996 | 1042 | 0.993 | 4853 | 0.998 | 14897 | 0.996 | 2212 | 0.99 | 5674 | 0.996 | 663 | 0.998 | 6088 | 0.995 | 1732 | 0.995 | 16 | 3.967 | 11.949 | 15.916 | ||||
ubiq | 23018 | RATG13 | T23018C|(surface_glycoprotein:TTT1456-1458CCT(F486P)) | 21544 | 0.998 | 40247 | 0.999 | 5401 | 0.976 | 26149 | 0.998 | 13473 | 0.998 | 11778 | 0.998 | 1657 | 0.712 | 2168 | 0.999 | 928 | 0.994 | 4547 | 0.999 | 13868 | 0.997 | 2045 | 0.995 | 5281 | 0.999 | 638 | 0.998 | 5708 | 0.998 | 1642 | 0.997 | 16 | 3.971 | 11.684 | 15.655 | |||
ubiq | 23019 | T23019C|(surface_glycoprotein:TTT1456-1458CCT(F486P)) | 21544 | 0.998 | 40247 | 0.999 | 5401 | 0.976 | 26149 | 0.998 | 13473 | 0.998 | 11778 | 0.998 | 1657 | 0.704 | 2168 | 0.999 | 928 | 0.994 | 4547 | 0.999 | 13868 | 0.997 | 2045 | 0.995 | 5281 | 0.999 | 638 | 0.998 | 5708 | 0.998 | 1642 | 0.997 | 16 | 3.971 | 11.676 | 15.647 | ||||
ubiq | 23031 | T23031C|(surface_glycoprotein:T1469C(F490S)) | 20365 | 0.999 | 38135 | 0.999 | 5108 | 0.974 | 24161 | 0.998 | 12803 | 0.998 | 11126 | 0.998 | 1543 | 0.705 | 2273 | 0.997 | 1209 | 0.993 | 4496 | 0.999 | 13776 | 0.999 | 1947 | 0.995 | 5346 | 0.999 | 585 | 0.998 | 5518 | 0.999 | 1532 | 0.998 | 16 | 3.96999999999999 | 11.678 | 15.648 | ||||
ubiq | 23055 | A23055G|(surface_glycoprotein:A1493G(Q498R)) | 17206 | 0.998 | 32849 | 0.998 | 4358 | 0.998 | 19428 | 0.998 | 10479 | 0.999 | 9071 | 0.998 | 1799 | 0.997 | 2394 | 0.998 | 1560 | 0.995 | 4024 | 0.998 | 12585 | 0.998 | 1742 | 0.992 | 4988 | 0.997 | 452 | 0.993 | 4623 | 0.998 | 1302 | 0.998 | 16 | 3.992 | 11.961 | 15.953 | ||||
ubiq | 23063 | A23063T|(surface_glycoprotein:A1501T(N501Y)) | 16206 | 0.947 | 32703 | 0.998 | 4325 | 0.997 | 19351 | 0.998 | 10427 | 0.998 | 9024 | 0.999 | 1790 | 0.997 | 2385 | 0.999 | 1532 | 0.979 | 4000 | 0.996 | 12511 | 0.996 | 1672 | 0.976 | 4946 | 0.993 | 453 | 1 | 4568 | 0.996 | 1293 | 0.997 | 16 | 3.94 | 11.926 | 15.866 | ||||
ubiq | 23075 | RATG13 | T23075C|(surface_glycoprotein:T1513C(Y505H)) | 14072 | 0.998 | 26889 | 0.999 | 3437 | 0.963 | 15394 | 0.999 | 8494 | 0.999 | 7376 | 0.998 | 1451 | 0.998 | 2148 | 0.998 | 1498 | 0.995 | 3370 | 0.999 | 10953 | 0.998 | 1451 | 0.995 | 4394 | 0.998 | 348 | 0.994 | 3790 | 0.997 | 1054 | 0.998 | 16 | 3.959 | 11.967 | 15.926 | |||
ubiq | 23403 | Delta | A23403G|(surface_glycoprotein:A1841G(D614G)) | 42201 | 0.997 | 87032 | 0.998 | 16837 | 0.995 | 53693 | 0.997 | 25037 | 0.998 | 9175 | 0.997 | 6089 | 0.997 | 7248 | 0.997 | 11086 | 0.992 | 16925 | 0.998 | 21838 | 0.995 | 6343 | 0.988 | 59282 | 0.996 | 7356 | 0.996 | 11111 | 0.997 | 1648 | 0.997 | 16 | 3.987 | 11.948 | 15.935 | |||
ubiq | 23599 | T23599G|(surface_glycoprotein:T2037G(N679K)) | 39096 | 0.867 | 19110 | 0.999 | 4716 | 0.998 | 21821 | 0.999 | 13138 | 0.998 | 5377 | 0.999 | 1770 | 0.998 | 3988 | 0.999 | 1692 | 0.995 | 4210 | 0.999 | 5727 | 0.998 | 8159 | 0.994 | 16231 | 0.998 | 2768 | 0.999 | 16201 | 0.998 | 836 | 1 | 16 | 3.863 | 11.975 | 15.838 | ||||
ubiq | 23604 | C23604A|(surface_glycoprotein:C2042A(P681H)) | 46429 | 0.999 | 19751 | 0.999 | 4851 | 0.997 | 22461 | 0.999 | 13635 | 0.999 | 5566 | 0.999 | 1844 | 0.999 | 4096 | 0.998 | 1745 | 0.994 | 4309 | 0.999 | 5901 | 0.997 | 8441 | 0.992 | 16773 | 0.998 | 2835 | 0.999 | 16840 | 0.998 | 864 | 1 | 16 | 3.99399999999999 | 11.972 | 15.966 | ||||
ubiq | 23854 | C23854A|(surface_glycoprotein:C2292A(N764K)) | 49186 | 0.851 | 21008 | 0.996 | 5115 | 0.99 | 21525 | 0.997 | 16502 | 0.996 | 6584 | 0.996 | 2110 | 0.996 | 4646 | 0.997 | 2378 | 0.983 | 4484 | 0.995 | 6875 | 0.989 | 9255 | 0.964 | 20612 | 0.991 | 2822 | 0.997 | 20231 | 0.993 | 1044 | 0.992 | 16 | 3.834 | 11.889 | 15.7229999999999 | ||||
24198 | C24198T|(surface_glycoprotein:C2636T(A879V)) | 2 | 0.011 | 12 | 0.279 | 20 | 1 | 3 | 1.29 | 0 | 1.29 | |||||||||||||||||||||||||||||||
24506 | T24506G|(surface_glycoprotein:T2944G(S982A)) | 8 | 0.286 | 11 | 0.028 | 2 | 0.314 | 0 | 0.314 | |||||||||||||||||||||||||||||||||
24914 | G24914C|(surface_glycoprotein:G3352C(D1118H)) | 704 | 0.129 | 556 | 0.431 | 14 | 0.004 | 3 | 0.56 | 0.004 | 0.564 | |||||||||||||||||||||||||||||||
25026 | A25026T|(surface_glycoprotein:A3464T(Y1155F)) | 559 | 0.11 | 440 | 0.398 | 5 | 0.002 | 3 | 0.508 | 0.002 | 0.51 | |||||||||||||||||||||||||||||||
25169 | C25169T|(surface_glycoprotein:C3607T(L1203F)) | 100 | 0.279 | 23 | 0.155 | 38 | 0.286 | 3 | 0.72 | 0 | 0.72 | |||||||||||||||||||||||||||||||
25631 | T25631C|(ORF3a_protein:T239C(V80A)) | 20244 | 0.294 | 2872 | 0.261 | 2 | 0.554999999999999 | 0 | 0.554999999999999 | |||||||||||||||||||||||||||||||||
26110 | C26110T|(ORF3a_protein:C718T(P240S)) | 536 | 0.136 | 622 | 0.336 | 2 | 0.472 | 0 | 0.472 | |||||||||||||||||||||||||||||||||
26116 | G26116A|(ORF3a_protein:G724A(E242K)) | 540 | 0.133 | 442 | 0.233 | 2 | 0.366 | 0 | 0.366 | |||||||||||||||||||||||||||||||||
ubiq | 26577 | C26577G|(membrane_glycoprotein:C55G(Q19E)) | 9642 | 0.862 | 17204 | 0.997 | 2425 | 0.995 | 15072 | 0.997 | 10536 | 0.997 | 9533 | 0.996 | 449 | 1 | 2716 | 0.999 | 1134 | 0.999 | 1054 | 0.984 | 18662 | 0.994 | 19880 | 0.996 | 12 | 3.851 | 7.965 | 11.8159999999999 | ||||||||||||
27382 | G27382-27382del|(ORF6_protein:181-181del(61fs)) | 2233 | 0.998 | 5 | 0.002 | 7 | 0.002 | 2 | 0.001 | 8 | 0.003 | 9 | 0.002 | 7 | 0.002 | 7 | 1.002 | 0.008 | 1.01 | |||||||||||||||||||||||
27385 | 27385-insertC|(ORF6_protein:184insertC(62fs)) | 2223 | 0.895 | 3 | 0.001 | 7 | 0.001 | 2 | 0.001 | 8 | 0.002 | 22 | 0.005 | 7 | 0.002 | 7 | 0.897 | 0.01 | 0.907 | |||||||||||||||||||||||
27431 | C27431T|(ORF7a_protein:C38T(A13V)) | 1331 | 0.488 | 3013 | 0.61 | 4 | 0.002 | 3 | 1.09799999999999 | 0.002 | 1.09999999999999 | |||||||||||||||||||||||||||||||
28048 | G28048T|(ORF8_protein:G155T(R52I)) | 71 | 0.321 | 4 | 0.003 | 2 | 0.324 | 0 | 0.324 | |||||||||||||||||||||||||||||||||
28791 | C28791T|(nucleocapsid_phosphoprotein:C518T(A173V)) | 22310 | 0.1 | 11742 | 0.192 | 2 | 0.292 | 0 | 0.292 | |||||||||||||||||||||||||||||||||
29728 | TTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACA29728-29770del | 14417 | 0.567 | 16428 | 0.103 | 2 | 0.669999999999999 | 0 | 0.669999999999999 |