This table shows the complete data from the mutations.tsv file exactly as it appears in the source. Scroll horizontally to see all columns.
| SRR33896801(4907254) | SRR33896815(4677155) | SRR33896819(4545901) | SRR33896825(5642691) | SRR33896833(5320594) | SRR33896839(4619555) | SRR33896855(5446829) | SRR33976503(4055489) | SRR33976515(6245788) | |||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ('2025-06-01', '242000') | ('2025-06-02', '350') | ('2025-06-02', '140000') | ('2025-06-02', '120000') | ('2025-06-02', '539116') | ('2025-06-01', '15000') | ('2025-06-02', '529541') | ('2025-06-02', '120000') | ('2025-06-02', '200000') | |||||||||||||||||
| Sequences | Count | Abundance | Count | Abundance | Count | Abundance | Count | Abundance | Count | Abundance | Count | Abundance | Count | Abundance | Count | Abundance | Count | Abundance | Total samples | Positives Sum | Negatives Sum | Total Sum | |||
| 137 | T137C | 2 | 0.000 | 10 | 0.000 | 1 | 0.000 | 4 | 0.000 | 3 | 0.000 | 14234 | 0.640 | 2 | 0.000 | 7 | 0.64 | 0.0 | 0.64 | ||||||
| 315 | G315A|(ORF1ab_polyprotein:G50A(S17N))|(ORF1a_polyprotein:G50A(S17N)) | 1 | 0.000 | 2 | 0.000 | 1 | 0.000 | 5967 | 0.211 | 4 | 0.211 | 0.0 | 0.211 | ||||||||||||
| linked | 329 | C329A|(ORF1ab_polyprotein:C64A(Q22K))|(ORF1a_polyprotein:C64A(Q22K)) | 21 | 0.000 | 15 | 0.000 | 13 | 0.000 | 12 | 0.000 | 13941 | 0.494 | 4 | 0.000 | 1 | 1.000 | 7 | 0.494 | 1.0 | 1.494 | |||||
| 336 | G336A|(ORF1ab_polyprotein:CGC70-72CAA(R24Q))|(ORF1a_polyprotein:CGC70-72CAA(R24Q)) | 5969 | 0.211 | 1 | 0.211 | 0 | 0.211 | ||||||||||||||||||
| 337 | C337A|(ORF1ab_polyprotein:CGC70-72CAA(R24Q))|(ORF1a_polyprotein:CGC70-72CAA(R24Q)) | 5969 | 0.211 | 1 | 0.211 | 0 | 0.211 | ||||||||||||||||||
| 344 | C344T|(ORF1ab_polyprotein:C79T(L27F))|(ORF1a_polyprotein:C79T(L27F)) | 1 | 0.000 | 4 | 0.000 | 1 | 0.000 | 2 | 0.000 | 13959 | 0.494 | 4 | 0.000 | 6 | 0.494 | 0.0 | 0.494 | ||||||||
| 378 | RATG13 | T378C|(ORF1ab_polyprotein:T113C(V38A))|(ORF1a_polyprotein:T113C(V38A)) | 8 | 0.000 | 8 | 0.000 | 3 | 0.000 | 3 | 0.000 | 6 | 0.000 | 13955 | 0.494 | 1 | 0.000 | 7 | 0.494 | 0.0 | 0.494 | |||||
| 404 | A404G|(ORF1ab_polyprotein:A139G(K47E))|(ORF1a_polyprotein:A139G(K47E)) | 6 | 0.000 | 4 | 0.000 | 1 | 0.000 | 1 | 0.000 | 4 | 0.000 | 5972 | 0.211 | 1 | 0.000 | 7 | 0.211 | 0.0 | 0.211 | ||||||
| 410 | G410-410del|(ORF1ab_polyprotein:145-145del(49fs))|(ORF1a_polyprotein:145-145del(49fs)) | 7952 | 0.282 | 1 | 0.282 | 0 | 0.282 | ||||||||||||||||||
| 686 | AAGTCATTT686-694del|(ORF1ab_polyprotein:421-429del(KSF141-143del))|(ORF1a_polyprotein:421-429del(KSF141-143del)) | 71448 | 0.633 | 1 | 0.633 | 0 | 0.633 | ||||||||||||||||||
| 786 | T786C|(ORF1ab_polyprotein:T521C(M174T))|(ORF1a_polyprotein:T521C(M174T)) | 28 | 0.000 | 38 | 0.000 | 17 | 0.000 | 22 | 0.000 | 9 | 0.000 | 71572 | 0.669 | 6 | 0.669 | 0.0 | 0.669 | ||||||||
| 795 | T795C|(ORF1ab_polyprotein:T530C(L177P))|(ORF1a_polyprotein:T530C(L177P)) | 28 | 0.000 | 39 | 0.000 | 11 | 0.000 | 22 | 0.000 | 11 | 0.000 | 71380 | 0.667 | 6 | 0.667 | 0.0 | 0.667 | ||||||||
| 942 | G942A|(ORF1ab_polyprotein:G677A(R226K))|(ORF1a_polyprotein:G677A(R226K)) | 6 | 0.000 | 5 | 0.000 | 2 | 0.000 | 10 | 0.000 | 4 | 0.000 | 106512 | 0.997 | 6 | 0.997 | 0.0 | 0.997 | ||||||||
| 979 | T979A|(ORF1ab_polyprotein:T714A(I238I))|(ORF1a_polyprotein:T714A(I238I)) | 27 | 0.000 | 22 | 0.000 | 14 | 0.000 | 29 | 0.000 | 11 | 0.000 | 71332 | 0.668 | 6 | 0.668 | 0.0 | 0.668 | ||||||||
| 1419 | C1419G|(ORF1ab_polyprotein:C1154G(A385G))|(ORF1a_polyprotein:C1154G(A385G)) | 397 | 1.000 | 1 | 1.0 | 0 | 1.0 | ||||||||||||||||||
| 1427 | C1427T|(ORF1ab_polyprotein:C1162T(H388Y))|(ORF1a_polyprotein:C1162T(H388Y)) | 1 | 0.000 | 397 | 1.000 | 2 | 1.0 | 0.0 | 1.0 | ||||||||||||||||
| 1455 | T1455C|(ORF1ab_polyprotein:T1190C(L397P))|(ORF1a_polyprotein:T1190C(L397P)) | 1 | 0.001 | 395 | 0.995 | 2 | 0.995 | 0.001 | 0.996 | ||||||||||||||||
| 1524 | G1524A|(ORF1ab_polyprotein:G1259A(C420Y))|(ORF1a_polyprotein:G1259A(C420Y)) | 394 | 0.995 | 1 | 0.995 | 0 | 0.995 | ||||||||||||||||||
| 1599 | G1599T|(ORF1ab_polyprotein:G1334T(G445V))|(ORF1a_polyprotein:G1334T(G445V)) | 1 | 0.003 | 1 | 0.001 | 1 | 0.000 | 397 | 0.985 | 4 | 0.985 | 0.004 | 0.989 | ||||||||||||
| 1989 | A1989G|(ORF1ab_polyprotein:A1724G(Q575R))|(ORF1a_polyprotein:A1724G(Q575R)) | 17 | 0.000 | 7 | 0.000 | 21 | 0.000 | 11 | 0.000 | 44782 | 0.992 | 5 | 0.992 | 0.0 | 0.992 | ||||||||||
| 2242 | TG2242-2243del|(ORF1ab_polyprotein:1977-1978del(659fs))|(ORF1a_polyprotein:1977-1978del(659fs)) | 44778 | 0.998 | 1 | 0.998 | 0 | 0.998 | ||||||||||||||||||
| 2485 | RATG13 | C2485T|(ORF1ab_polyprotein:C2220T(I740I))|(ORF1a_polyprotein:C2220T(I740I)) | 1 | 0.000 | 15011 | 0.534 | 2 | 0.000 | 2 | 0.000 | 4 | 0.534 | 0.0 | 0.534 | |||||||||||
| 2534 | G2534A|(ORF1ab_polyprotein:G2269A(V757I))|(ORF1a_polyprotein:G2269A(V757I)) | 1 | 0.000 | 4 | 0.000 | 15060 | 0.536 | 4 | 0.000 | 1 | 0.000 | 5 | 0.536 | 0.0 | 0.536 | ||||||||||
| 2618 | A2618G|(ORF1ab_polyprotein:A2353G(I785V))|(ORF1a_polyprotein:A2353G(I785V)) | 2 | 0.000 | 1075 | 0.434 | 2 | 0.434 | 0.0 | 0.434 | ||||||||||||||||
| 2658 | A2658G|(ORF1ab_polyprotein:A2393G(K798R))|(ORF1a_polyprotein:A2393G(K798R)) | 2 | 0.001 | 4 | 0.000 | 17 | 0.001 | 1394 | 0.564 | 4 | 0.564 | 0.002 | 0.566 | ||||||||||||
| 2706 | C2706T|(ORF1ab_polyprotein:C2441T(T814I))|(ORF1a_polyprotein:C2441T(T814I)) | 2 | 0.000 | 1078 | 0.435 | 2 | 0.435 | 0.0 | 0.435 | ||||||||||||||||
| 2773 | RATG13 | C2773T|(ORF1ab_polyprotein:C2508T(Y836Y))|(ORF1a_polyprotein:C2508T(Y836Y)) | 1382 | 0.565 | 1 | 0.565 | 0 | 0.565 | |||||||||||||||||
| linked | 2790 | C2790T|(ORF1ab_polyprotein:C2525T(T842I))|(ORF1a_polyprotein:C2525T(T842I)) | 3770 | 0.996 | 8850 | 0.996 | 15872 | 0.996 | 1381 | 0.564 | 4 | 0.564 | 2.988 | 3.552 | |||||||||||
| 2832 | A2832G|(ORF1ab_polyprotein:A2567G(K856R))|(ORF1a_polyprotein:A2567G(K856R)) | 2 | 0.000 | 1 | 0.000 | 1056 | 0.432 | 3 | 0.432 | 0.0 | 0.432 | ||||||||||||||
| linkedubiq | 3037 | RATG13,Delta | C3037T|(ORF1ab_polyprotein:C2772T(F924F))|(ORF1a_polyprotein:C2772T(F924F)) | 8403 | 0.986 | 7403 | 0.984 | 1159 | 0.981 | 10220 | 0.986 | 9931 | 0.987 | 5180 | 0.993 | 6 | 0.986 | 4.931 | 5.917 | ||||||
| 3096 | C3096T|(ORF1ab_polyprotein:C2831T(S944L))|(ORF1a_polyprotein:C2831T(S944L)) | 3069 | 0.303 | 1 | 0.000 | 2 | 0.303 | 0.0 | 0.303 | ||||||||||||||||
| 3177 | C3177T|(ORF1ab_polyprotein:C2912T(P971L))|(ORF1a_polyprotein:C2912T(P971L)) | 4249 | 0.419 | 1 | 0.419 | 0 | 0.419 | ||||||||||||||||||
| linked | 3565 | T3565C|(ORF1ab_polyprotein:T3300C(G1100G))|(ORF1a_polyprotein:T3300C(G1100G)) | 1 | 1.000 | 47846 | 0.998 | 43717 | 0.998 | 6634 | 0.999 | 41686 | 0.662 | 33371 | 0.746 | 66253 | 0.998 | 7 | 0.662 | 5.739 | 6.401 | |||||
| 3598 | T3598C|(ORF1ab_polyprotein:T3333C(A1111A))|(ORF1a_polyprotein:T3333C(A1111A)) | 7 | 0.000 | 5 | 0.000 | 25884 | 0.411 | 12 | 0.000 | 1 | 0.000 | 5 | 0.411 | 0.0 | 0.411 | ||||||||||
| 3744 | A3744G|(ORF1ab_polyprotein:A3479G(H1160R))|(ORF1a_polyprotein:A3479G(H1160R)) | 2 | 0.000 | 9 | 0.000 | 21086 | 0.335 | 10 | 0.000 | 3 | 0.000 | 5 | 0.335 | 0.0 | 0.335 | ||||||||||
| 3927 | C3927T|(ORF1ab_polyprotein:C3662T(S1221L))|(ORF1a_polyprotein:C3662T(S1221L)) | 1 | 0.000 | 2 | 0.000 | 1 | 0.000 | 16140 | 0.996 | 2 | 0.000 | 5 | 0.996 | 0.0 | 0.996 | ||||||||||
| ubiq | 4184 | G4184A|(ORF1ab_polyprotein:G3919A(G1307S))|(ORF1a_polyprotein:G3919A(G1307S)) | 1 | 1.000 | 130477 | 0.998 | 225764 | 0.998 | 20210 | 0.998 | 72930 | 0.998 | 144997 | 0.998 | 315063 | 0.998 | 2 | 1.000 | 8 | 0.998 | 6.99 | 7.988 | |||
| ubiq | 4321 | C4321T|(ORF1ab_polyprotein:C4056T(A1352A))|(ORF1a_polyprotein:C4056T(A1352A)) | 1 | 0.500 | 130045 | 0.996 | 224871 | 0.996 | 20116 | 0.995 | 72609 | 0.995 | 144263 | 0.995 | 310969 | 0.996 | 1 | 0.500 | 8 | 0.995 | 5.978 | 6.973 | |||
| 4442 | RATG13 | G4442A|(ORF1ab_polyprotein:G4177A(V1393M))|(ORF1a_polyprotein:G4177A(V1393M)) | 11 | 0.000 | 20 | 0.000 | 14 | 0.000 | 20 | 0.000 | 7 | 0.000 | 20915 | 0.130 | 5 | 0.000 | 7 | 0.000 | 8 | 0.13 | 0.0 | 0.13 | |||
| 4475 | C4475T|(ORF1ab_polyprotein:C4210T(R1404C))|(ORF1a_polyprotein:C4210T(R1404C)) | 3 | 0.000 | 30 | 0.000 | 3 | 0.000 | 4 | 0.000 | 35058 | 0.376 | 6 | 0.000 | 1 | 0.000 | 7 | 0.376 | 0.0 | 0.376 | ||||||
| 4485 | A4485C|(ORF1ab_polyprotein:A4220C(K1407T))|(ORF1a_polyprotein:A4220C(K1407T)) | 55 | 0.001 | 98 | 0.000 | 19 | 0.000 | 37 | 0.000 | 36528 | 0.391 | 31 | 0.000 | 8 | 0.000 | 7 | 0.391 | 0.001 | 0.392 | ||||||
| 4495 | A4495T|(ORF1ab_polyprotein:A4230T(K1410N))|(ORF1a_polyprotein:A4230T(K1410N)) | 81 | 0.001 | 216 | 0.001 | 37 | 0.001 | 96 | 0.001 | 36443 | 0.390 | 87 | 0.001 | 21 | 0.000 | 7 | 0.39 | 0.005 | 0.395 | ||||||
| 4795 | RATG13 | C4795T|(ORF1ab_polyprotein:C4530T(S1510S))|(ORF1a_polyprotein:C4530T(S1510S)) | 11 | 0.000 | 6 | 0.000 | 8 | 0.000 | 69990 | 0.997 | 6 | 0.000 | 5 | 0.997 | 0.0 | 0.997 | |||||||||
| 4822 | A4822C|(ORF1ab_polyprotein:A4557C(Q1519H))|(ORF1a_polyprotein:A4557C(Q1519H)) | 113 | 0.000 | 34 | 0.000 | 34 | 0.000 | 19 | 0.000 | 70193 | 0.999 | 34 | 0.000 | 18 | 0.000 | 7 | 0.999 | 0.0 | 0.999 | ||||||
| 5182 | T5182G|(ORF1ab_polyprotein:T4917G(D1639E))|(ORF1a_polyprotein:T4917G(D1639E)) | 11 | 0.001 | 34 | 0.001 | 17 | 0.001 | 13 | 0.001 | 8 | 0.001 | 12884 | 0.998 | 9 | 0.001 | 7 | 0.000 | 8 | 0.998 | 0.006 | 1.004 | ||||
| 5386 | T5386G|(ORF1ab_polyprotein:T5121G(A1707A))|(ORF1a_polyprotein:T5121G(A1707A)) | 4 | 0.000 | 66 | 0.000 | 10 | 0.000 | 9 | 0.000 | 21 | 0.000 | 34599 | 0.998 | 30 | 0.000 | 17 | 0.000 | 8 | 0.998 | 0.0 | 0.998 | ||||
| 5455 | A5455C|(ORF1ab_polyprotein:A5190C(E1730D))|(ORF1a_polyprotein:A5190C(E1730D)) | 6 | 0.000 | 44 | 0.000 | 2 | 0.000 | 3 | 0.000 | 9 | 0.000 | 21816 | 0.998 | 17 | 0.000 | 10 | 0.000 | 8 | 0.998 | 0.0 | 0.998 | ||||
| 5600 | RATG13 | T5600C|(ORF1ab_polyprotein:T5335C(F1779L))|(ORF1a_polyprotein:T5335C(F1779L)) | 6 | 0.000 | 25 | 0.000 | 3 | 0.000 | 6 | 0.000 | 10 | 0.000 | 21779 | 0.995 | 20 | 0.000 | 15 | 0.000 | 8 | 0.995 | 0.0 | 0.995 | |||
| 5648 | RATG13 | A5648C|(ORF1ab_polyprotein:A5383C(K1795Q))|(ORF1a_polyprotein:A5383C(K1795Q)) | 3 | 0.000 | 48 | 0.000 | 7 | 0.000 | 14 | 0.000 | 12 | 0.000 | 21827 | 0.997 | 17 | 0.000 | 14 | 0.000 | 8 | 0.997 | 0.0 | 0.997 | |||
| 5693 | C5693T|(ORF1ab_polyprotein:C5428T(P1810S))|(ORF1a_polyprotein:C5428T(P1810S)) | 2 | 0.000 | 13 | 0.000 | 3 | 0.000 | 2 | 0.000 | 21667 | 0.991 | 3 | 0.000 | 6 | 0.991 | 0.0 | 0.991 | ||||||||
| 5883 | A5883G|(ORF1ab_polyprotein:A5618G(Y1873C))|(ORF1a_polyprotein:A5618G(Y1873C)) | 4 | 0.000 | 8 | 0.000 | 2 | 0.500 | 14 | 0.000 | 1 | 0.000 | 5 | 0.5 | 0.0 | 0.5 | ||||||||||
| 5889 | 5889-insertTCAC|(ORF1ab_polyprotein:ACAACC5623-5628ATCACCAATTCCinsert(TT1875-1876ITNSinsert))|(ORF1a_polyprotein:ACAACC5623-5628ATCACCAATTCCinsert(TT1875-1876ITNSinsert)) | 2 | 0.500 | 1 | 0.5 | 0 | 0.5 | ||||||||||||||||||
| linked | 5892 | 5892-insertTT|(ORF1ab_polyprotein:ACAACC5623-5628ATCACCAATTCCinsert(TT1875-1876ITNSinsert))|(ORF1a_polyprotein:ACAACC5623-5628ATCACCAATTCCinsert(TT1875-1876ITNSinsert)) | 2 | 0.056 | 1 | 0.056 | 0 | 0.056 | |||||||||||||||||
| 6064 | T6064C|(ORF1ab_polyprotein:T5799C(D1933D))|(ORF1a_polyprotein:T5799C(D1933D)) | 3 | 0.000 | 57 | 0.000 | 2 | 0.000 | 11 | 0.000 | 5 | 0.000 | 57136 | 0.254 | 7 | 0.000 | 7 | 0.254 | 0.0 | 0.254 | ||||||
| 6070 | C6070A|(ORF1ab_polyprotein:C5805A(I1935I))|(ORF1a_polyprotein:C5805A(I1935I)) | 52 | 0.001 | 331 | 0.001 | 38 | 0.001 | 93 | 0.001 | 31 | 0.001 | 92577 | 0.408 | 44 | 0.001 | 7 | 0.408 | 0.006 | 0.414 | ||||||
| 6145 | C6145T|(ORF1ab_polyprotein:C5880T(F1960F))|(ORF1a_polyprotein:C5880T(F1960F)) | 3 | 0.000 | 23 | 0.000 | 5 | 0.000 | 5 | 0.000 | 5 | 0.000 | 57131 | 0.254 | 4 | 0.000 | 7 | 0.254 | 0.0 | 0.254 | ||||||
| 6312 | C6312T|(ORF1ab_polyprotein:C6047T(T2016I))|(ORF1a_polyprotein:C6047T(T2016I)) | 3 | 0.000 | 5 | 0.000 | 58028 | 0.365 | 4 | 0.000 | 5 | 0.000 | 5 | 0.365 | 0.0 | 0.365 | ||||||||||
| linkedubiq | 6336 | C6336T|(ORF1ab_polyprotein:C6071T(S2024L))|(ORF1a_polyprotein:C6071T(S2024L)) | 1 | 0.333 | 3 | 0.000 | 1 | 1.000 | 9 | 0.000 | 158160 | 0.994 | 2 | 0.000 | 1 | 0.000 | 7 | 0.994 | 1.333 | 2.327 | |||||
| linkedubiq | 6513 | GTT6513-6515del|(ORF1ab_polyprotein:AGTTTA6247-6252ATAdel(SL2083-2084Idel))|(ORF1a_polyprotein:AGTTTA6247-6252ATAdel(SL2083-2084Idel)) | 1 | 0.250 | 1 | 1.000 | 21646 | 0.264 | 158236 | 0.993 | 4 | 0.993 | 1.514 | 2.507 | |||||||||||
| 7834 | C7834T|(ORF1ab_polyprotein:C7569T(N2523N))|(ORF1a_polyprotein:C7569T(N2523N)) | 3 | 0.000 | 5 | 0.000 | 69781 | 0.995 | 13 | 0.000 | 2 | 0.000 | 5 | 0.995 | 0.0 | 0.995 | ||||||||||
| ubiq | 8293 | C8293T|(ORF1ab_polyprotein:C8028T(T2676T))|(ORF1a_polyprotein:C8028T(T2676T)) | 49946 | 0.993 | 337129 | 0.993 | 50306 | 0.993 | 2 | 0.500 | 103062 | 0.993 | 2 | 1.000 | 116744 | 0.993 | 2 | 1.000 | 4 | 0.800 | 9 | 1.0 | 7.265 | 8.265 | |
| ubiq | 8393 | G8393A|(ORF1ab_polyprotein:G8128A(A2710T))|(ORF1a_polyprotein:G8128A(A2710T)) | 49408 | 0.996 | 333493 | 0.997 | 49789 | 0.996 | 2 | 0.500 | 102052 | 0.997 | 2 | 1.000 | 115444 | 0.997 | 2 | 1.000 | 2 | 1.000 | 9 | 1.0 | 7.483 | 8.483 | |
| 8894 | A8894G|(ORF1ab_polyprotein:A8629G(T2877A))|(ORF1a_polyprotein:A8629G(T2877A)) | 3 | 0.000 | 7 | 0.000 | 2 | 0.000 | 4373 | 0.998 | 1 | 0.000 | 5 | 0.998 | 0.0 | 0.998 | ||||||||||
| 8970 | T8970G|(ORF1ab_polyprotein:T8705G(L2902R))|(ORF1a_polyprotein:T8705G(L2902R)) | 2 | 0.000 | 7 | 0.000 | 1 | 0.000 | 4369 | 0.997 | 4 | 0.997 | 0.0 | 0.997 | ||||||||||||
| 10012 | T10012A|(ORF1ab_polyprotein:T9747A(L3249L))|(ORF1a_polyprotein:T9747A(L3249L)) | 2 | 0.001 | 4 | 0.000 | 5 | 0.001 | 5 | 0.000 | 2 | 0.001 | 3941 | 0.999 | 6 | 0.001 | 7 | 0.999 | 0.004 | 1.003 | ||||||
| linkedubiq | 10029 | C10029T|(ORF1ab_polyprotein:C9764T(T3255I))|(ORF1a_polyprotein:C9764T(T3255I)) | 2899 | 0.997 | 12597 | 0.997 | 5176 | 0.995 | 13558 | 0.996 | 2250 | 0.997 | 3933 | 0.997 | 6985 | 0.993 | 7 | 0.997 | 5.975 | 6.9719999999999995 | |||||
| 10082 | T10082A|(ORF1ab_polyprotein:T9817A(S3273T))|(ORF1a_polyprotein:T9817A(S3273T)) | 5 | 0.002 | 7 | 0.001 | 7 | 0.001 | 13 | 0.001 | 3971 | 0.993 | 12 | 0.002 | 6 | 0.993 | 0.007 | 1.0 | ||||||||
| 10279 | RATG13 | C10279T|(ORF1ab_polyprotein:C10014T(L3338L))|(ORF1a_polyprotein:C10014T(L3338L)) | 2 | 0.000 | 1 | 0.000 | 4 | 0.000 | 37895 | 0.995 | 1 | 0.000 | 5 | 0.995 | 0.0 | 0.995 | |||||||||
| linkedubiq | 10447 | RATG13 | G10447A|(ORF1ab_polyprotein:G10182A(R3394R))|(ORF1a_polyprotein:G10182A(R3394R)) | 46231 | 0.998 | 52724 | 0.998 | 32724 | 0.998 | 70922 | 0.998 | 18596 | 0.997 | 38013 | 0.998 | 26284 | 0.998 | 7 | 0.998 | 5.987 | 6.985 | ||||
| linkedubiq | 10449 | C10449A|(ORF1ab_polyprotein:C10184A(P3395H))|(ORF1a_polyprotein:C10184A(P3395H)) | 46231 | 0.998 | 52731 | 0.998 | 32713 | 0.998 | 70911 | 0.997 | 18606 | 0.998 | 38004 | 0.998 | 26289 | 0.998 | 7 | 0.998 | 5.987 | 6.985 | |||||
| 10563 | G10563T|(ORF1ab_polyprotein:G10298T(G3433V))|(ORF1a_polyprotein:G10298T(G3433V)) | 35 | 0.000 | 78 | 0.000 | 25 | 0.000 | 11 | 0.000 | 1 | 0.000 | 62235 | 0.405 | 6 | 0.000 | 7 | 0.405 | 0.0 | 0.405 | ||||||
| 10717 | T10717C|(ORF1ab_polyprotein:T10452C(N3484N))|(ORF1a_polyprotein:T10452C(N3484N)) | 24 | 0.000 | 57 | 0.000 | 27 | 0.000 | 9 | 0.000 | 64406 | 0.530 | 5 | 0.53 | 0.0 | 0.53 | ||||||||||
| 10761 | A10761G|(ORF1ab_polyprotein:A10496G(K3499R))|(ORF1a_polyprotein:A10496G(K3499R)) | 17 | 0.000 | 71 | 0.000 | 19 | 0.000 | 1 | 0.000 | 55142 | 0.462 | 5 | 0.462 | 0.0 | 0.462 | ||||||||||
| 11081 | RATG13 | T11081G|(ORF1ab_polyprotein:T10816G(L3606V))|(ORF1a_polyprotein:T10816G(L3606V)) | 1 | 0.000 | 14 | 0.001 | 70 | 0.001 | 36 | 0.001 | 124605 | 0.997 | 21 | 0.001 | 6 | 0.997 | 0.004 | 1.001 | |||||||
| 11109 | C11109T|(ORF1ab_polyprotein:C10844T(A3615V))|(ORF1a_polyprotein:C10844T(A3615V)) | 4 | 0.000 | 3 | 0.000 | 7 | 0.000 | 1 | 0.000 | 124611 | 0.997 | 3 | 0.000 | 6 | 0.997 | 0.0 | 0.997 | ||||||||
| 11199 | C11199T|(ORF1ab_polyprotein:C10934T(A3645V))|(ORF1a_polyprotein:C10934T(A3645V)) | 5 | 0.000 | 2 | 0.000 | 6 | 0.000 | 6 | 0.000 | 150823 | 0.999 | 3 | 0.000 | 6 | 0.999 | 0.0 | 0.999 | ||||||||
| 11283 | GTTTGTCTG11283-11291del|(ORF1ab_polyprotein:AGTTTGTCTGGT11017-11028AGTdel(SLSG3673-3676Sdel))|(ORF1a_polyprotein:AGTTTGTCTGGT11017-11028AGTdel(SLSG3673-3676Sdel)) | 5 | 0.000 | 11 | 0.000 | 16409 | 0.605 | 20 | 0.000 | 29 | 0.001 | 5 | 0.605 | 0.001 | 0.606 | ||||||||||
| 11449 | T11449C|(ORF1ab_polyprotein:T11184C(D3728D))|(ORF1a_polyprotein:T11184C(D3728D)) | 6 | 0.000 | 7883 | 0.288 | 7 | 0.000 | 1 | 0.000 | 4 | 0.288 | 0.0 | 0.288 | ||||||||||||
| 11455 | RATG13 | C11455T|(ORF1ab_polyprotein:C11190T(A3730A))|(ORF1a_polyprotein:C11190T(A3730A)) | 5 | 0.000 | 7890 | 0.288 | 1 | 0.000 | 3 | 0.288 | 0.0 | 0.288 | |||||||||||||
| 11522 | T11522G|(ORF1ab_polyprotein:T11257G(F3753V))|(ORF1a_polyprotein:T11257G(F3753V)) | 11 | 0.005 | 13 | 0.007 | 42 | 0.007 | 25 | 0.007 | 3778 | 0.765 | 18 | 0.004 | 1 | 0.007 | 7 | 0.765 | 0.037 | 0.802 | ||||||
| 11537 | A11537G|(ORF1ab_polyprotein:A11272G(I3758V))|(ORF1a_polyprotein:A11272G(I3758V)) | 2 | 0.000 | 3765 | 0.757 | 2 | 0.757 | 0.0 | 0.757 | ||||||||||||||||
| 11580 | C11580T|(ORF1ab_polyprotein:C11315T(T3772I))|(ORF1a_polyprotein:C11315T(T3772I)) | 1 | 0.000 | 1142 | 0.230 | 1 | 0.000 | 3 | 0.23 | 0.0 | 0.23 | ||||||||||||||
| linked | 11727 | G11727A|(ORF1ab_polyprotein:G11462A(R3821K))|(ORF1a_polyprotein:G11462A(R3821K)) | 1975 | 0.995 | 1869 | 0.994 | 6014 | 0.994 | 3511 | 0.993 | 1047 | 0.230 | 2480 | 0.619 | 85 | 0.988 | 7 | 0.23 | 5.583 | 5.813000000000001 | |||||
| 11875 | A11875G|(ORF1ab_polyprotein:A11610G(V3870V))|(ORF1a_polyprotein:A11610G(V3870V)) | 36 | 0.000 | 3 | 0.000 | 5 | 0.000 | 26 | 0.000 | 47017 | 0.997 | 62 | 0.000 | 2 | 0.000 | 7 | 0.997 | 0.0 | 0.997 | ||||||
| 12100 | C12100T|(ORF1ab_polyprotein:C11835T(A3945A))|(ORF1a_polyprotein:C11835T(A3945A)) | 5 | 0.000 | 1 | 0.000 | 2 | 0.000 | 9 | 0.000 | 36096 | 0.749 | 15 | 0.000 | 2 | 0.000 | 7 | 0.749 | 0.0 | 0.749 | ||||||
| 12116 | C12116T|(ORF1ab_polyprotein:C11851T(L3951F))|(ORF1a_polyprotein:C11851T(L3951F)) | 13 | 0.000 | 4 | 0.000 | 12 | 0.000 | 11950 | 0.248 | 23 | 0.000 | 5 | 0.248 | 0.0 | 0.248 | ||||||||||
| 12135 | T12135C|(ORF1ab_polyprotein:T11870C(F3957S))|(ORF1a_polyprotein:T11870C(F3957S)) | 20 | 0.000 | 4 | 0.000 | 5 | 0.000 | 25 | 0.000 | 12485 | 0.260 | 38 | 0.000 | 6 | 0.26 | 0.0 | 0.26 | ||||||||
| 12328 | G12328A|(ORF1ab_polyprotein:G12063A(K4021K))|(ORF1a_polyprotein:G12063A(K4021K)) | 5 | 0.000 | 1 | 0.000 | 3 | 0.000 | 16490 | 0.511 | 2 | 0.000 | 5 | 0.511 | 0.0 | 0.511 | ||||||||||
| 12331 | G12331T|(ORF1ab_polyprotein:G12066T(R4022S))|(ORF1a_polyprotein:G12066T(R4022S)) | 41 | 0.001 | 24 | 0.001 | 48 | 0.001 | 15 | 0.001 | 16525 | 0.512 | 44 | 0.001 | 6 | 0.512 | 0.005 | 0.517 | ||||||||
| linkedubiq | 12789 | C12789T|(ORF1ab_polyprotein:C12524T(T4175I))|(ORF1a_polyprotein:C12524T(T4175I)) | 1 | 0.500 | 62120 | 0.996 | 27464 | 0.997 | 56076 | 0.995 | 28259 | 0.996 | 3533 | 0.997 | 18077 | 0.997 | 7 | 0.997 | 5.481 | 6.478 | |||||
| linkedubiq | 12815 | RATG13 | C12815T|(ORF1ab_polyprotein:C12550T(L4184L))|(ORF1a_polyprotein:C12550T(L4184L)) | 1 | 1.000 | 61844 | 0.992 | 27422 | 0.993 | 55939 | 0.992 | 28162 | 0.992 | 3523 | 0.994 | 18009 | 0.993 | 7 | 0.994 | 5.962 | 6.9559999999999995 | ||||
| 12866 | G12866T|(ORF1ab_polyprotein:G12601T(G4201*))|(ORF1a_polyprotein:G12601T(G4201*)) | 29 | 0.000 | 5 | 0.000 | 17 | 0.000 | 7 | 0.000 | 3527 | 0.996 | 3 | 0.000 | 6 | 0.996 | 0.0 | 0.996 | ||||||||
| linkedubiq | 12880 | C12880T|(ORF1ab_polyprotein:C12615T(I4205I))|(ORF1a_polyprotein:C12615T(I4205I)) | 1 | 1.000 | 61933 | 0.993 | 27471 | 0.994 | 55990 | 0.993 | 28188 | 0.993 | 3513 | 0.993 | 18034 | 0.994 | 1 | 0.500 | 8 | 0.993 | 6.467 | 7.46 | |||
| 13195 | T13195C|(ORF1ab_polyprotein:T12930C(V4310V))|(ORF1a_polyprotein:T12930C(V4310V)) | 6 | 0.000 | 2 | 0.001 | 1 | 0.000 | 1 | 0.000 | 1 | 0.000 | 6639 | 0.998 | 5 | 0.000 | 7 | 0.998 | 0.001 | 0.999 | ||||||
| 13296 | A13296C|(ORF1ab_polyprotein:A13031C(D4344A))|(ORF1a_polyprotein:A13031C(D4344A)) | 16 | 0.000 | 1 | 0.000 | 8 | 0.001 | 8 | 0.000 | 6637 | 0.997 | 24 | 0.000 | 6 | 0.997 | 0.001 | 0.998 | ||||||||
| 14034 | T14034A|(ORF1ab_polyprotein:T13770A(N4590K)) | 2 | 0.000 | 25 | 0.000 | 3 | 0.000 | 251 | 0.988 | 4 | 0.988 | 0.0 | 0.988 | ||||||||||||
| 14107 | A14107C|(ORF1ab_polyprotein:A13843C(I4615L)) | 5 | 0.000 | 22 | 0.000 | 11 | 0.000 | 56 | 0.000 | 10 | 0.000 | 66740 | 0.999 | 6 | 0.000 | 7 | 0.999 | 0.0 | 0.999 | ||||||
| 14116 | A14116G|(ORF1ab_polyprotein:A13852G(T4618A)) | 25 | 0.000 | 11 | 0.000 | 9 | 0.000 | 7 | 0.000 | 67409 | 0.999 | 4 | 0.000 | 6 | 0.999 | 0.0 | 0.999 | ||||||||
| 14126 | G14126A|(ORF1ab_polyprotein:G13862A(S4621N)) | 9 | 0.000 | 10 | 0.000 | 4 | 0.000 | 3 | 0.000 | 67278 | 0.997 | 1 | 0.000 | 6 | 0.997 | 0.0 | 0.997 | ||||||||
| linked | 14459 | T14459G|(ORF1ab_polyprotein:T14195G(F4732C)) | 15 | 0.002 | 4 | 0.333 | 2 | 0.002 | 94 | 0.003 | 27 | 0.002 | 1 | 0.333 | 15 | 0.003 | 7 | 0.333 | 0.34500000000000003 | 0.678 | |||||
| 14461 | G14461T|(ORF1ab_polyprotein:G14197T(V4733L)) | 3 | 0.000 | 5 | 0.000 | 2 | 0.000 | 1 | 1.000 | 4 | 1.0 | 0.0 | 1.0 | ||||||||||||
| 14465 | T14465A|(ORF1ab_polyprotein:T14201A(V4734D)) | 2 | 0.000 | 7 | 0.000 | 2 | 0.000 | 1 | 1.000 | 1 | 0.000 | 5 | 1.0 | 0.0 | 1.0 | ||||||||||
| 14718 | G14718T|(ORF1ab_polyprotein:G14454T(K4818N)) | 5 | 0.001 | 16 | 0.000 | 2 | 0.000 | 1 | 0.125 | 4 | 0.125 | 0.001 | 0.126 | ||||||||||||
| 14788 | A14788G|(ORF1ab_polyprotein:A14524G(I4842V)) | 6 | 0.000 | 6 | 0.000 | 2 | 0.000 | 6137 | 0.520 | 1 | 0.000 | 5 | 0.52 | 0.0 | 0.52 | ||||||||||
| 14889 | C14889T|(ORF1ab_polyprotein:C14625T(Y4875Y)) | 3 | 0.000 | 5 | 0.000 | 2 | 0.000 | 6227 | 0.519 | 1 | 0.000 | 5 | 0.519 | 0.0 | 0.519 | ||||||||||
| 15231 | T15231C|(ORF1ab_polyprotein:T14967C(G4989G)) | 20 | 0.000 | 8 | 0.000 | 52 | 0.000 | 20 | 0.000 | 24347 | 0.505 | 8 | 0.000 | 6 | 0.505 | 0.0 | 0.505 | ||||||||
| 15240 | C15240T|(ORF1ab_polyprotein:C14976T(N4992N)) | 7 | 0.000 | 1 | 0.000 | 12 | 0.000 | 2 | 0.000 | 46564 | 0.989 | 2 | 0.000 | 6 | 0.989 | 0.0 | 0.989 | ||||||||
| 15267 | AG15267-15268del|(ORF1ab_polyprotein:15003-15004del(5001fs)) | 23082 | 0.490 | 1 | 0.49 | 0 | 0.49 | ||||||||||||||||||
| 15284 | T15284C|(ORF1ab_polyprotein:T15020C(M5007T)) | 29 | 0.000 | 9 | 0.000 | 46 | 0.000 | 27 | 0.000 | 23104 | 0.491 | 12 | 0.000 | 6 | 0.491 | 0.0 | 0.491 | ||||||||
| 15640 | A15640G|(ORF1ab_polyprotein:A15376G(N5126D)) | 4 | 0.000 | 15 | 0.000 | 24 | 0.000 | 11 | 0.000 | 15895 | 0.268 | 14 | 0.000 | 7 | 0.000 | 7 | 0.268 | 0.0 | 0.268 | ||||||
| 15656 | C15656T|(ORF1ab_polyprotein:C15392T(T5131I)) | 2 | 0.000 | 1 | 0.000 | 14 | 0.000 | 9 | 0.000 | 59144 | 0.997 | 5 | 0.000 | 6 | 0.997 | 0.0 | 0.997 | ||||||||
| 15676 | T15676G|(ORF1ab_polyprotein:T15412G(Y5138D)) | 3 | 0.000 | 9 | 0.000 | 26 | 0.000 | 14 | 0.000 | 15456 | 0.261 | 12 | 0.000 | 2 | 0.000 | 7 | 0.261 | 0.0 | 0.261 | ||||||
| 15738 | C15738T|(ORF1ab_polyprotein:C15474T(F5158F)) | 1 | 0.000 | 7679 | 0.692 | 2 | 0.692 | 0.0 | 0.692 | ||||||||||||||||
| 16076 | A16076G|(ORF1ab_polyprotein:A15812G(D5271G)) | 17 | 0.000 | 12 | 0.000 | 46 | 0.000 | 22 | 0.000 | 57786 | 0.288 | 7 | 0.000 | 6 | 0.288 | 0.0 | 0.288 | ||||||||
| 16163 | C16163A|(ORF1ab_polyprotein:C15899A(T5300N)) | 44 | 0.000 | 32 | 0.000 | 72 | 0.000 | 49 | 0.000 | 57780 | 0.288 | 21 | 0.000 | 6 | 0.288 | 0.0 | 0.288 | ||||||||
| 17014 | G17014A|(ORF1ab_polyprotein:G16750A(D5584N)) | 2 | 0.000 | 11704 | 0.356 | 2 | 0.356 | 0.0 | 0.356 | ||||||||||||||||
| 17236 | A17236G|(ORF1ab_polyprotein:A16972G(I5658V)) | 8 | 0.000 | 8 | 0.000 | 10 | 0.000 | 12 | 0.000 | 57511 | 0.995 | 5 | 0.000 | 9 | 0.000 | 7 | 0.995 | 0.0 | 0.995 | ||||||
| 17322 | A17322G|(ORF1ab_polyprotein:A17058G(A5686A)) | 12 | 0.000 | 28 | 0.000 | 12 | 0.000 | 22 | 0.000 | 50868 | 0.881 | 18 | 0.000 | 26 | 0.000 | 7 | 0.881 | 0.0 | 0.881 | ||||||
| 18501 | C18501A|(ORF1ab_polyprotein:C18237A(Y6079*)) | 24 | 0.000 | 20 | 0.000 | 1 | 0.125 | 8 | 0.000 | 4 | 0.125 | 0.0 | 0.125 | ||||||||||||
| 18509 | T18509G|(ORF1ab_polyprotein:T18245G(L6082R)) | 89 | 0.001 | 93 | 0.001 | 1 | 0.143 | 48 | 0.001 | 4 | 0.143 | 0.003 | 0.146 | ||||||||||||
| 18513 | T18513G|(ORF1ab_polyprotein:T18249G(P6083P)) | 383 | 0.003 | 392 | 0.003 | 1 | 0.143 | 205 | 0.003 | 4 | 0.143 | 0.009000000000000001 | 0.152 | ||||||||||||
| 18539 | T18539G|(ORF1ab_polyprotein:T18275G(V6092G)) | 23 | 0.000 | 20 | 0.000 | 1 | 0.167 | 13 | 0.000 | 4 | 0.167 | 0.0 | 0.167 | ||||||||||||
| 18577 | A18577C|(ORF1ab_polyprotein:A18313C(R6105R)) | 189 | 0.001 | 151 | 0.001 | 1 | 0.167 | 129 | 0.002 | 4 | 0.167 | 0.004 | 0.171 | ||||||||||||
| 18581 | T18581G|(ORF1ab_polyprotein:T18317G(V6106G)) | 380 | 0.003 | 318 | 0.002 | 1 | 0.167 | 273 | 0.003 | 4 | 0.167 | 0.008 | 0.17500000000000002 | ||||||||||||
| 18585 | RATG13 | A18585G|(ORF1ab_polyprotein:A18321G(V6107V)) | 504 | 0.003 | 426 | 0.003 | 1 | 0.167 | 314 | 0.004 | 4 | 0.167 | 0.01 | 0.17700000000000002 | |||||||||||
| linked | 18587 | T18587G|(ORF1ab_polyprotein:T18323G(F6108C)) | 526 | 0.004 | 468 | 0.003 | 2 | 0.333 | 335 | 0.004 | 1 | 0.250 | 5 | 0.333 | 0.261 | 0.5940000000000001 | |||||||||
| 18592 | T18592G|(ORF1ab_polyprotein:T18328G(L6110V)) | 908 | 0.006 | 863 | 0.006 | 1 | 0.167 | 545 | 0.007 | 4 | 0.167 | 0.019 | 0.186 | ||||||||||||
| 18607 | T18607G|(ORF1ab_polyprotein:TTT18343-18345GGT(F6115G)) | 41 | 0.000 | 27 | 0.000 | 1 | 0.167 | 17 | 0.000 | 4 | 0.167 | 0.0 | 0.167 | ||||||||||||
| 18608 | T18608G|(ORF1ab_polyprotein:TTT18343-18345GGT(F6115G)) | 41 | 0.000 | 27 | 0.000 | 1 | 0.167 | 17 | 0.000 | 4 | 0.167 | 0.0 | 0.167 | ||||||||||||
| 18611 | A18611C|(ORF1ab_polyprotein:A18347C(E6116A)) | 15 | 0.000 | 14 | 0.000 | 1 | 0.167 | 15 | 0.000 | 4 | 0.167 | 0.0 | 0.167 | ||||||||||||
| 18613 | T18613G|(ORF1ab_polyprotein:T18349G(L6117V)) | 259 | 0.002 | 263 | 0.002 | 1 | 0.167 | 136 | 0.002 | 4 | 0.167 | 0.006 | 0.17300000000000001 | ||||||||||||
| 18622 | A18622C|(ORF1ab_polyprotein:A18358C(M6120L)) | 137 | 0.001 | 115 | 0.001 | 1 | 0.167 | 76 | 0.001 | 4 | 0.167 | 0.003 | 0.17 | ||||||||||||
| 18638 | A18638C|(ORF1ab_polyprotein:A18374C(K6125T)) | 57 | 0.000 | 45 | 0.000 | 1 | 0.167 | 22 | 0.000 | 4 | 0.167 | 0.0 | 0.167 | ||||||||||||
| 18645 | A18645C|(ORF1ab_polyprotein:A18381C(G6127G)) | 148 | 0.001 | 139 | 0.001 | 2 | 0.286 | 99 | 0.001 | 4 | 0.286 | 0.003 | 0.289 | ||||||||||||
| 18658 | T18658C|(ORF1ab_polyprotein:T18394C(C6132R)) | 65 | 0.000 | 65 | 0.000 | 1 | 0.143 | 46 | 0.001 | 4 | 0.143 | 0.001 | 0.144 | ||||||||||||
| 18667 | T18667G|(ORF1ab_polyprotein:T18403G(C6135G)) | 257 | 0.002 | 301 | 0.002 | 1 | 0.143 | 183 | 0.002 | 4 | 0.143 | 0.006 | 0.149 | ||||||||||||
| linked | 18672 | T18672G|(ORF1ab_polyprotein:T18408G(D6136E)) | 1 | 0.167 | 259 | 0.002 | 389 | 0.003 | 1 | 0.143 | 223 | 0.003 | 5 | 0.143 | 0.17500000000000002 | 0.318 | |||||||||
| 18739 | G18739T|(ORF1ab_polyprotein:G18475T(D6159Y)) | 64 | 0.000 | 65 | 0.000 | 1 | 0.167 | 37 | 0.000 | 4 | 0.167 | 0.0 | 0.167 | ||||||||||||
| 18752 | A18752C|(ORF1ab_polyprotein:A18488C(N6163T)) | 335 | 0.002 | 206 | 0.002 | 1 | 0.167 | 143 | 0.002 | 4 | 0.167 | 0.006 | 0.17300000000000001 | ||||||||||||
| 18781 | G18781T|(ORF1ab_polyprotein:G18517T(G6173C)) | 83 | 0.001 | 79 | 0.001 | 1 | 0.167 | 50 | 0.001 | 4 | 0.167 | 0.003 | 0.17 | ||||||||||||
| linked | 18793 | A18793G|(ORF1ab_polyprotein:A18529G(N6177D)) | 19 | 0.000 | 19 | 0.000 | 1 | 0.091 | 8 | 0.000 | 4 | 0.091 | 0.0 | 0.091 | |||||||||||
| 18802 | A18802C|(ORF1ab_polyprotein:A18538C(S6180R)) | 439 | 0.003 | 475 | 0.004 | 2 | 0.167 | 269 | 0.003 | 4 | 0.167 | 0.01 | 0.17700000000000002 | ||||||||||||
| linkedubiq | 18894 | C18894T|(ORF1ab_polyprotein:C18630T(C6210C)) | 81292 | 0.996 | 1 | 1.000 | 7617 | 0.996 | 1 | 1.000 | 77803 | 0.996 | 35407 | 0.996 | 59639 | 0.996 | 1 | 1.000 | 8 | 0.996 | 6.984 | 7.98 | |||
| linked | 18977 | A18977T|(ORF1ab_polyprotein:A18713T(Q6238L)) | 121 | 0.001 | 8 | 0.001 | 145 | 0.002 | 58 | 0.002 | 87 | 0.001 | 5 | 0.002 | 0.005 | 0.007 | |||||||||
| linked | 19046 | A19046C|(ORF1ab_polyprotein:A18782C(K6261T)) | 841 | 0.010 | 61 | 0.008 | 837 | 0.011 | 421 | 0.012 | 678 | 0.011 | 5 | 0.012 | 0.04 | 0.052000000000000005 | |||||||||
| linked | 19059 | T19059C|(ORF1ab_polyprotein:T18795C(C6265C)) | 19 | 0.000 | 2 | 0.000 | 17 | 0.000 | 7 | 0.000 | 19 | 0.000 | 5 | 0.0 | 0.0 | 0.0 | |||||||||
| linked | 19129 | G19129C|(ORF1ab_polyprotein:G18865C(E6289Q)) | 16 | 0.000 | 2 | 0.000 | 12 | 0.000 | 4 | 0.000 | 7 | 0.000 | 5 | 0.0 | 0.0 | 0.0 | |||||||||
| linked | 19137 | A19137T|(ORF1ab_polyprotein:A18873T(L6291F)) | 43 | 0.000 | 10 | 0.000 | 63 | 0.001 | 15 | 0.000 | 41 | 0.001 | 5 | 0.0 | 0.002 | 0.002 | |||||||||
| linked | 19163 | A19163C|(ORF1ab_polyprotein:A18899C(D6300A)) | 15 | 0.000 | 2 | 0.000 | 9 | 0.000 | 5 | 0.000 | 12 | 0.000 | 5 | 0.0 | 0.0 | 0.0 | |||||||||
| 19186 | C19186G|(ORF1ab_polyprotein:C18922G(L6308V)) | 9 | 0.000 | 21 | 0.001 | 7 | 0.000 | 1 | 0.125 | 7 | 0.001 | 5 | 0.125 | 0.002 | 0.127 | ||||||||||
| 19193 | G19193T|(ORF1ab_polyprotein:G18929T(W6310L)) | 12 | 0.001 | 24 | 0.001 | 15 | 0.001 | 1 | 0.125 | 5 | 0.001 | 5 | 0.125 | 0.004 | 0.129 | ||||||||||
| linked | 19413 | A19413T|(ORF1ab_polyprotein:A19149T(Q6383H)) | 12 | 0.001 | 1 | 1.000 | 20 | 0.001 | 21 | 0.001 | 1 | 0.500 | 8 | 0.001 | 6 | 0.5 | 1.004 | 1.504 | |||||||
| 19493 | G19493A|(ORF1ab_polyprotein:G19229A(R6410K)) | 10 | 0.000 | 8 | 0.000 | 8 | 0.000 | 7 | 0.000 | 80850 | 0.502 | 9 | 0.000 | 5 | 0.000 | 7 | 0.502 | 0.0 | 0.502 | ||||||
| 19584 | T19584C|(ORF1ab_polyprotein:T19320C(D6440D)) | 98 | 0.000 | 68 | 0.000 | 53 | 0.000 | 73 | 0.000 | 81760 | 0.500 | 96 | 0.000 | 32 | 0.000 | 7 | 0.5 | 0.0 | 0.5 | ||||||
| 19728 | T19728C|(ORF1ab_polyprotein:T19464C(D6488D)) | 33 | 0.000 | 18 | 0.000 | 13 | 0.000 | 23 | 0.000 | 80042 | 0.496 | 20 | 0.000 | 11 | 0.000 | 7 | 0.496 | 0.0 | 0.496 | ||||||
| 20315 | T20315C|(ORF1ab_polyprotein:T20051C(F6684S)) | 5 | 0.000 | 2 | 0.000 | 5 | 0.000 | 8 | 0.000 | 15786 | 0.997 | 8 | 0.000 | 6 | 0.997 | 0.0 | 0.997 | ||||||||
| 20404 | C20404T|(ORF1ab_polyprotein:C20140T(P6714S)) | 5 | 0.000 | 2 | 0.000 | 3481 | 0.180 | 1 | 0.000 | 1 | 0.000 | 5 | 0.18 | 0.0 | 0.18 | ||||||||||
| 20411 | A20411C|(ORF1ab_polyprotein:A20147C(E6716A)) | 1 | 0.000 | 3496 | 0.182 | 1 | 0.000 | 1 | 0.000 | 4 | 0.182 | 0.0 | 0.182 | ||||||||||||
| 21271 | T21271-21271del|(ORF1ab_polyprotein:21007-21007del(7003fs)) | 27 | 0.000 | 27 | 0.000 | 2 | 0.000 | 59096 | 0.248 | 12 | 0.000 | 41 | 0.000 | 6 | 0.248 | 0.0 | 0.248 | ||||||||
| 21587 | C21587A|(surface_glycoprotein:C25A(P9T)) | 5 | 0.001 | 51 | 0.001 | 6 | 0.001 | 2074 | 0.997 | 4 | 0.001 | 18 | 0.001 | 6 | 0.997 | 0.005 | 1.002 | ||||||||
| 21624 | G21624T|(surface_glycoprotein:G62T(R21I)) | 7 | 0.000 | 2353 | 0.992 | 2 | 0.992 | 0.0 | 0.992 | ||||||||||||||||
| linkedubiq | 21711 | RATG13 | C21711T|(surface_glycoprotein:C149T(S50L)) | 1451 | 0.991 | 1 | 1.000 | 274 | 0.993 | 285 | 0.993 | 1739 | 0.995 | 1809 | 0.997 | 6 | 0.993 | 4.976 | 5.969 | ||||||
| 21762 | C21762T|(surface_glycoprotein:C200T(A67V)) | 291 | 0.990 | 1 | 0.99 | 0 | 0.99 | ||||||||||||||||||
| linkedubiq | 21765 | TACATG21765-21770del|(surface_glycoprotein:ATACATGTC202-210ATCdel(IHV68-70Idel)) | 1462 | 0.969 | 1 | 1.000 | 278 | 0.975 | 291 | 0.990 | 1764 | 0.973 | 1823 | 0.986 | 6 | 0.99 | 4.903 | 5.893 | |||||||
| 21789 | RATG13 | C21789T|(surface_glycoprotein:C227T(T76I)) | 292 | 0.993 | 1 | 0.993 | 0 | 0.993 | |||||||||||||||||
| 21792 | A21792T|(surface_glycoprotein:A230T(K77M)) | 9 | 0.006 | 276 | 0.939 | 2 | 0.939 | 0.006 | 0.945 | ||||||||||||||||
| 21846 | C21846T|(surface_glycoprotein:C284T(T95I)) | 289 | 1.000 | 1 | 1.0 | 0 | 1.0 | ||||||||||||||||||
| 21969 | G21969T|(surface_glycoprotein:G407T(C136F)) | 154 | 0.001 | 213 | 0.001 | 47 | 0.001 | 134 | 0.001 | 100 | 0.001 | 51785 | 0.505 | 75 | 0.001 | 7 | 0.505 | 0.006 | 0.511 | ||||||
| 21977 | CCATTTTTGGGTGTTTATTACCACAAAAACAACAAAAGTTGG21977-22018del|(surface_glycoprotein:415-456del(PFLGVYYHKNNKSW139-152del)) | 56419 | 0.551 | 1 | 0.551 | 0 | 0.551 | ||||||||||||||||||
| 21987 | GTGTTTATT21987-21995del|(surface_glycoprotein:GGTGTTTATTAC424-435GACdel(GVYY142-145Ddel)) | 45591 | 0.445 | 1 | 0.445 | 0 | 0.445 | ||||||||||||||||||
| 22012 | AAGTTGGATGGAAAGTGAGTT22012-22032del|(surface_glycoprotein:AAAAGTTGGATGGAAAGTGAGTTC448-471AACdel(KSWMESEF150-157Ndel)) | 45739 | 0.447 | 1 | 0.447 | 0 | 0.447 | ||||||||||||||||||
| 22079 | C22079A|(surface_glycoprotein:C517A(Q173K)) | 111 | 0.001 | 186 | 0.001 | 34 | 0.001 | 100 | 0.001 | 96 | 0.001 | 46232 | 0.445 | 49 | 0.000 | 7 | 0.445 | 0.005 | 0.45 | ||||||
| 22082 | C22082T|(surface_glycoprotein:C520T(P174S)) | 13 | 0.000 | 17 | 0.000 | 2 | 0.000 | 15 | 0.000 | 7 | 0.000 | 46121 | 0.444 | 5 | 0.000 | 7 | 0.444 | 0.0 | 0.444 | ||||||
| 22106 | A22106G|(surface_glycoprotein:A544G(K182E)) | 12 | 0.000 | 49 | 0.000 | 13 | 0.000 | 25 | 0.000 | 24 | 0.000 | 46137 | 0.444 | 6 | 0.444 | 0.0 | 0.444 | ||||||||
| linkedubiq | 22194 | ATT22194-22196del|(surface_glycoprotein:AATTTA631-636ATAdel(NL211-212Idel)) | 213013 | 0.996 | 236292 | 0.997 | 100119 | 0.997 | 151418 | 0.997 | 169437 | 0.997 | 101860 | 0.996 | 141165 | 0.997 | 103207 | 0.998 | 414417 | 0.998 | 9 | 0.996 | 7.977 | 8.973 | |
| 22205 | 22205-insertGAGCCAGAA|(surface_glycoprotein:643insertGAGCCAGAA(215EPE)) | 101238 | 0.387 | 1 | 0.387 | 0 | 0.387 | ||||||||||||||||||
| 22209 | T22209C|(surface_glycoprotein:T647C(L216P)) | 52990 | 0.203 | 1 | 0.203 | 0 | 0.203 | ||||||||||||||||||
| 22217 | G22217A|(surface_glycoprotein:G655A(G219S)) | 7 | 0.000 | 15 | 0.000 | 4 | 0.000 | 7 | 0.000 | 6 | 0.000 | 256316 | 0.979 | 5 | 0.000 | 3 | 0.000 | 7 | 0.000 | 9 | 0.979 | 0.0 | 0.979 | ||
| 22224 | C22224T|(surface_glycoprotein:C662T(S221L)) | 28 | 0.000 | 36 | 0.000 | 39 | 0.000 | 37 | 0.000 | 22 | 0.000 | 48526 | 0.185 | 40 | 0.000 | 10 | 0.000 | 46 | 0.000 | 9 | 0.185 | 0.0 | 0.185 | ||
| 22289 | GCTTTA22289-22294del|(surface_glycoprotein:727-732del(AL243-244del)) | 54268 | 0.337 | 1 | 0.337 | 0 | 0.337 | ||||||||||||||||||
| 22308 | T22308C|(surface_glycoprotein:T746C(L249S)) | 16 | 0.000 | 3 | 0.000 | 8 | 0.000 | 157487 | 0.978 | 8 | 0.000 | 14 | 0.000 | 37 | 0.000 | 7 | 0.978 | 0.0 | 0.978 | ||||||
| 22329 | CAGGTTGGACAGCTGGTGCTG22329-22349del|(surface_glycoprotein:TCAGGTTGGACAGCTGGTGCTGCA766-789TCAdel(SGWTAGAA256-263Sdel)) | 156186 | 0.972 | 1 | 0.972 | 0 | 0.972 | ||||||||||||||||||
| 22578 | G22578A|(surface_glycoprotein:G1016A(G339D)) | 4 | 0.000 | 3 | 0.000 | 1 | 0.000 | 3 | 0.000 | 10369 | 0.697 | 2 | 0.000 | 55 | 0.000 | 7 | 0.697 | 0.0 | 0.697 | ||||||
| linked | 22599 | RATG13 | G22599C|(surface_glycoprotein:G1037C(R346T)) | 47488 | 0.995 | 30759 | 0.995 | 15294 | 0.905 | 13631 | 0.995 | 24083 | 0.918 | 13511 | 0.908 | 9107 | 0.995 | 77 | 0.987 | 724221 | 0.996 | 9 | 0.908 | 7.786 | 8.693999999999999 |
| 22661 | G22661T|(surface_glycoprotein:G1099T(V367F)) | 23 | 0.000 | 18 | 0.001 | 5 | 0.000 | 6 | 0.000 | 12 | 0.000 | 9235 | 0.610 | 4 | 0.000 | 595 | 0.001 | 8 | 0.61 | 0.002 | 0.612 | ||||
| 22667 | T22667A|(surface_glycoprotein:T1105A(Y369N)) | 13 | 0.000 | 18 | 0.001 | 7 | 0.000 | 9 | 0.001 | 10 | 0.000 | 9223 | 0.610 | 5 | 0.001 | 318 | 0.000 | 8 | 0.61 | 0.003 | 0.613 | ||||
| 22673 | T22673C|(surface_glycoprotein:TCC1111-1113CTC(S371L)) | 25 | 0.001 | 26 | 0.001 | 14 | 0.001 | 7 | 0.001 | 14 | 0.001 | 10490 | 0.696 | 4 | 0.000 | 227 | 0.000 | 8 | 0.696 | 0.005 | 0.701 | ||||
| 22674 | C22674T|(surface_glycoprotein:TCC1111-1113CTC(S371L)) | 25 | 0.001 | 26 | 0.001 | 14 | 0.001 | 7 | 0.001 | 14 | 0.001 | 10490 | 0.697 | 4 | 0.000 | 227 | 0.000 | 8 | 0.697 | 0.005 | 0.702 | ||||
| linked | 22679 | T22679C|(surface_glycoprotein:T1117C(S373P)) | 48054 | 0.994 | 31114 | 0.994 | 16992 | 0.993 | 13789 | 0.993 | 26386 | 0.994 | 13698 | 0.910 | 9189 | 0.993 | 78 | 1.000 | 731123 | 0.994 | 9 | 0.91 | 7.955 | 8.865 | |
| 22683 | T22683C|(surface_glycoprotein:T1121C(F374S)) | 15 | 0.000 | 11 | 0.000 | 8 | 0.000 | 1 | 0.000 | 11 | 0.000 | 9216 | 0.613 | 4 | 0.000 | 114 | 0.000 | 8 | 0.613 | 0.0 | 0.613 | ||||
| 22812 | A22812C|(surface_glycoprotein:AAG1249-1251ACT(K417T)) | 20 | 0.000 | 14 | 0.000 | 9 | 0.000 | 5 | 0.000 | 7 | 0.000 | 63211 | 0.872 | 2 | 0.000 | 154 | 0.000 | 8 | 0.872 | 0.0 | 0.872 | ||||
| 22813 | G22813T|(surface_glycoprotein:AAG1249-1251ACT(K417T)) | 20 | 0.000 | 14 | 0.000 | 9 | 0.000 | 5 | 0.000 | 7 | 0.000 | 63211 | 0.872 | 2 | 0.000 | 154 | 0.000 | 8 | 0.872 | 0.0 | 0.872 | ||||
| 22894 | RATG13 | G22894A|(surface_glycoprotein:G1332A(K444K)) | 57487 | 0.995 | 1 | 0.000 | 2 | 0.995 | 0.0 | 0.995 | |||||||||||||||
| 22907 | T22907A|(surface_glycoprotein:T1345A(Y449N)) | 2 | 0.003 | 57478 | 0.995 | 3 | 0.000 | 3 | 0.995 | 0.003 | 0.998 | ||||||||||||||
| linkedubiq | 22992 | G22992A|(surface_glycoprotein:G1430A(S477N)) | 2 | 1.000 | 2901 | 0.998 | 2 | 1.000 | 712 | 0.997 | 57642 | 0.996 | 628 | 1.000 | 10695 | 0.999 | 112 | 0.991 | 8 | 0.996 | 6.985 | 7.981 | |||
| 23040 | A23040G|(surface_glycoprotein:A1478G(Q493R)) | 57709 | 0.998 | 1 | 0.002 | 2 | 0.998 | 0.002 | 1.0 | ||||||||||||||||
| linkedubiq | 23063 | A23063T|(surface_glycoprotein:A1501T(N501Y)) | 2887 | 0.993 | 1 | 1.000 | 711 | 0.996 | 57487 | 0.994 | 626 | 0.997 | 10670 | 0.997 | 110 | 0.991 | 7 | 0.994 | 5.974 | 6.968 | |||||
| 23073 | G23073A|(surface_glycoprotein:G1511A(G504D)) | 57717 | 0.998 | 1 | 0.998 | 0 | 0.998 | ||||||||||||||||||
| linkedubiq | 23075 | RATG13 | T23075C|(surface_glycoprotein:T1513C(Y505H)) | 2904 | 0.999 | 1 | 0.250 | 713 | 0.997 | 57725 | 0.999 | 628 | 0.998 | 10688 | 0.999 | 109 | 0.956 | 7 | 0.999 | 5.199 | 6.1979999999999995 | ||||
| 23119 | T23119A|(surface_glycoprotein:T1557A(H519Q)) | 58 | 0.000 | 90 | 0.000 | 47 | 0.000 | 131 | 0.000 | 64 | 0.000 | 5188 | 0.108 | 67 | 0.000 | 383 | 0.001 | 8 | 0.108 | 0.001 | 0.109 | ||||
| 23202 | C23202A|(surface_glycoprotein:C1640A(T547K)) | 104 | 0.001 | 154 | 0.001 | 96 | 0.001 | 217 | 0.001 | 142 | 0.001 | 48907 | 0.995 | 128 | 0.001 | 828 | 0.001 | 8 | 0.995 | 0.007 | 1.002 | ||||
| linkedubiq | 23403 | Delta | A23403G|(surface_glycoprotein:A1841G(D614G)) | 120295 | 0.999 | 235614 | 0.998 | 155790 | 0.998 | 313362 | 0.998 | 209053 | 0.998 | 60002 | 0.998 | 176722 | 0.999 | 1 | 1.000 | 598196 | 0.998 | 9 | 0.998 | 7.9879999999999995 | 8.985999999999999 |
| 23436 | A23436G|(surface_glycoprotein:A1874G(H625R)) | 16 | 0.000 | 35 | 0.000 | 20 | 0.000 | 75 | 0.000 | 38 | 0.000 | 13226 | 0.191 | 39 | 0.000 | 63 | 0.000 | 8 | 0.191 | 0.0 | 0.191 | ||||
| 23453 | C23453G|(surface_glycoprotein:C1891G(P631A)) | 1 | 0.000 | 7766 | 0.678 | 2 | 0.678 | 0.0 | 0.678 | ||||||||||||||||
| linkedubiq | 23525 | C23525T|(surface_glycoprotein:C1963T(H655Y)) | 12227 | 0.998 | 9408 | 0.998 | 18529 | 0.998 | 11403 | 0.997 | 6165 | 0.998 | 5 | 0.997 | 3.992 | 4.989 | |||||||||
| linked | 23598 | A23598G|(surface_glycoprotein:AAT2035-2037AGG(N679R)) | 2 | 0.000 | 56105 | 0.477 | 7 | 0.636 | 24 | 0.000 | 3 | 0.000 | 58442 | 0.497 | 695798 | 0.999 | 7 | 0.0 | 2.609 | 2.609 | |||||
| linked | 23599 | T23599G|(surface_glycoprotein:AAT2035-2037AGG(N679R)) | 2 | 0.000 | 56105 | 0.477 | 7 | 0.636 | 24 | 0.000 | 3 | 0.000 | 58442 | 0.497 | 695798 | 0.999 | 7 | 0.0 | 2.609 | 2.609 | |||||
| linkedubiq | 23599 | T23599G|(surface_glycoprotein:T2037G(N679K)) | 69832 | 1.000 | 61362 | 0.522 | 1 | 0.091 | 88221 | 0.999 | 7580 | 0.999 | 59064 | 0.502 | 27 | 0.000 | 7 | 0.999 | 3.114 | 4.1129999999999995 | |||||
| 23604 | C23604A|(surface_glycoprotein:C2042A(P681H)) | 7 | 0.000 | 11 | 0.000 | 6 | 0.000 | 1 | 0.125 | 6 | 0.000 | 34 | 0.000 | 6 | 0.125 | 0.0 | 0.125 | ||||||||
| linked | 23604 | Delta | C23604G|(surface_glycoprotein:C2042G(P681R)) | 70419 | 0.999 | 112384 | 0.999 | 8 | 0.889 | 74335 | 0.999 | 6 | 0.750 | 112589 | 0.999 | 708194 | 0.999 | 7 | 0.75 | 5.884 | 6.634 | ||||
| 23667 | A23667C|(surface_glycoprotein:A2105C(E702A)) | 2 | 0.000 | 1 | 0.200 | 4 | 0.000 | 6 | 0.000 | 4 | 0.2 | 0.0 | 0.2 | ||||||||||||
| 23669 | A23669C|(surface_glycoprotein:A2107C(N703H)) | 4 | 0.000 | 9 | 0.000 | 4 | 0.000 | 1 | 0.200 | 5 | 0.000 | 24 | 0.000 | 6 | 0.2 | 0.0 | 0.2 | ||||||||
| 23819 | T23819G|(surface_glycoprotein:T2257G(L753V)) | 26 | 0.000 | 59 | 0.001 | 38 | 0.001 | 1 | 0.200 | 52 | 0.000 | 159 | 0.000 | 6 | 0.2 | 0.002 | 0.202 | ||||||||
| linked | 23854 | C23854A|(surface_glycoprotein:C2292A(N764K)) | 70274 | 0.996 | 112961 | 0.997 | 7 | 0.467 | 74609 | 0.997 | 4 | 0.000 | 112518 | 0.997 | 707106 | 0.996 | 7 | 0.0 | 5.45 | 5.45 | |||||
| linkedubiq | 23948 | G23948T|(surface_glycoprotein:G2386T(D796Y)) | 3 | 1.000 | 35178 | 0.986 | 59900 | 0.986 | 70808 | 0.987 | 47685 | 0.980 | 3 | 0.600 | 8 | 0.667 | 7 | 0.98 | 5.226 | 6.2059999999999995 | |||||
| 23953 | T23953A|(surface_glycoprotein:T2391A(F797L)) | 5 | 0.000 | 31 | 0.001 | 22 | 0.000 | 48013 | 0.987 | 4 | 0.987 | 0.001 | 0.988 | ||||||||||||
| 24032 | A24032G|(surface_glycoprotein:A2470G(N824D)) | 6 | 0.000 | 24 | 0.000 | 39 | 0.001 | 49517 | 0.992 | 4 | 0.992 | 0.001 | 0.993 | ||||||||||||
| 24130 | C24130A|(surface_glycoprotein:C2568A(N856K)) | 9 | 0.000 | 29 | 0.000 | 22 | 0.000 | 48239 | 0.992 | 4 | 0.992 | 0.0 | 0.992 | ||||||||||||
| 24188 | G24188T|(surface_glycoprotein:G2626T(A876S)) | 6 | 0.000 | 15 | 0.000 | 15 | 0.000 | 48537 | 0.998 | 4 | 0.998 | 0.0 | 0.998 | ||||||||||||
| 24199 | RATG13 | G24199A|(surface_glycoprotein:G2637A(A879A)) | 8 | 0.000 | 10 | 0.000 | 1 | 0.000 | 48022 | 0.999 | 4 | 0.999 | 0.0 | 0.999 | |||||||||||
| 24443 | 24443-insertT|(surface_glycoprotein:2881insertT(961fs)) | 2 | 0.667 | 1 | 0.667 | 0 | 0.667 | ||||||||||||||||||
| linkedubiq | 24469 | T24469A|(surface_glycoprotein:T2907A(N969K)) | 2462 | 0.990 | 333 | 0.994 | 834 | 0.990 | 5 | 1.000 | 1580 | 0.993 | 5 | 1.0 | 3.967 | 4.9670000000000005 | |||||||||
| 24503 | C24503T|(surface_glycoprotein:C2941T(L981F)) | 1 | 0.000 | 4124 | 0.199 | 2 | 0.199 | 0.0 | 0.199 | ||||||||||||||||
| ubiq | 24990 | C24990T|(surface_glycoprotein:C3428T(P1143L)) | 1 | 1.000 | 1 | 1.000 | 48954 | 0.994 | 90344 | 0.995 | 99921 | 0.994 | 3 | 1.000 | 160138 | 0.994 | 7 | 1.0 | 5.977 | 6.977 | |||||
| ubiq | 25000 | RATG13 | C25000T|(surface_glycoprotein:C3438T(D1146D)) | 1 | 1.000 | 48963 | 0.994 | 90160 | 0.993 | 99829 | 0.993 | 3 | 1.000 | 159936 | 0.993 | 1 | 1.000 | 7 | 1.0 | 5.973 | 6.973 | ||||
| 25525 | T25525A|(ORF3a_protein:T133A(W45R)) | 60 | 0.000 | 41 | 0.000 | 60 | 0.000 | 46 | 0.000 | 90114 | 0.917 | 46 | 0.000 | 6 | 0.917 | 0.0 | 0.917 | ||||||||
| 25536 | T25536A|(ORF3a_protein:T144A(V48V)) | 28 | 0.000 | 28 | 0.000 | 48 | 0.000 | 42 | 0.000 | 90350 | 0.919 | 38 | 0.000 | 6 | 0.919 | 0.0 | 0.919 | ||||||||
| linkedubiq | 25584 | C25584T|(ORF3a_protein:C192T(T64T)) | 153273 | 0.994 | 1 | 1.000 | 131906 | 0.995 | 207042 | 0.995 | 149514 | 0.995 | 99244 | 0.995 | 189062 | 0.994 | 1 | 1.000 | 8 | 0.995 | 6.973 | 7.968 | |||
| 25614 | RATG13 | C25614T|(ORF3a_protein:C222T(S74S)) | 6 | 0.000 | 8 | 0.000 | 24 | 0.000 | 7 | 0.000 | 90403 | 0.920 | 20 | 0.000 | 6 | 0.92 | 0.0 | 0.92 | |||||||
| 25652 | T25652A|(ORF3a_protein:T260A(F87Y)) | 35 | 0.000 | 30 | 0.000 | 36 | 0.000 | 30 | 0.000 | 18977 | 0.193 | 20 | 0.000 | 6 | 0.193 | 0.0 | 0.193 | ||||||||
| linked | 25698 | A25698T|(ORF3a_protein:A306T(E102D)) | 58 | 0.000 | 45 | 0.000 | 80 | 0.000 | 63 | 0.000 | 3546 | 0.034 | 118 | 0.001 | 6 | 0.034 | 0.001 | 0.035 | |||||||
| 25710 | C25710T|(ORF3a_protein:C318T(L106L)) | 3 | 0.000 | 3 | 0.000 | 9 | 0.000 | 9 | 0.000 | 93483 | 0.888 | 6 | 0.000 | 6 | 0.888 | 0.0 | 0.888 | ||||||||
| 25909 | G25909A|(ORF3a_protein:G517A(D173N)) | 1 | 0.000 | 2 | 0.000 | 3659 | 0.474 | 2 | 0.001 | 4 | 0.474 | 0.001 | 0.475 | ||||||||||||
| 25916 | C25916A|(ORF3a_protein:C524A(T175K)) | 1 | 0.000 | 3 | 0.001 | 14 | 0.001 | 1 | 0.000 | 3656 | 0.474 | 5 | 0.474 | 0.002 | 0.476 | ||||||||||
| 26058 | C26058T|(ORF3a_protein:C666T(D222D)) | 1 | 0.000 | 2 | 0.000 | 3 | 0.000 | 2 | 0.000 | 4751 | 0.315 | 4 | 0.000 | 6 | 0.315 | 0.0 | 0.315 | ||||||||
| 26110 | C26110T|(ORF3a_protein:C718T(P240S)) | 1 | 0.000 | 3 | 0.000 | 4803 | 0.316 | 3 | 0.000 | 4 | 0.316 | 0.0 | 0.316 | ||||||||||||
| 26147 | C26147T|(ORF3a_protein:C755T(S252L)) | 1 | 0.000 | 1 | 0.000 | 4740 | 0.312 | 6 | 0.000 | 4 | 0.312 | 0.0 | 0.312 | ||||||||||||
| 26159 | TTA26159-26161del|(ORF3a_protein:GTTAAT766-771GATdel(VN256-257Ddel)) | 4797 | 0.316 | 1 | 0.316 | 0 | 0.316 | ||||||||||||||||||
| 26161 | AATCCAGTAATGGAACCAATTTATG26161-26185del|(ORF3a_protein:769-793del(257fs)) | 10320 | 0.680 | 1 | 0.68 | 0 | 0.68 | ||||||||||||||||||
| 26185 | G26185T|(ORF3a_protein:G793T(D265Y)) | 1 | 0.000 | 8 | 0.001 | 3 | 0.000 | 10 | 0.000 | 4782 | 0.315 | 21 | 0.001 | 6 | 0.315 | 0.002 | 0.317 | ||||||||
| 26205 | T26205C|(ORF3a_protein:T813C(T271T)) | 3 | 0.001 | 5 | 0.000 | 8 | 0.000 | 8 | 0.000 | 15364 | 0.993 | 21 | 0.001 | 6 | 0.993 | 0.002 | 0.995 | ||||||||
| linkedubiq | 26270 | C26270T|(envelope_protein:C26T(T9I)) | 5390 | 0.994 | 15460 | 0.995 | 18480 | 0.995 | 20636 | 0.995 | 14920 | 0.995 | 35499 | 0.994 | 6 | 0.995 | 4.973 | 5.968 | |||||||
| 26309 | C26309T|(envelope_protein:C65T(A22V)) | 1 | 0.000 | 14960 | 0.998 | 1 | 0.000 | 3 | 0.998 | 0.0 | 0.998 | ||||||||||||||
| 26311 | T26311A|(envelope_protein:TTC67-69ATT(F23I)) | 4640 | 0.309 | 1 | 0.309 | 0 | 0.309 | ||||||||||||||||||
| 26313 | C26313A|(envelope_protein:C69A(F23L)) | 2 | 0.000 | 8 | 0.001 | 5 | 0.000 | 9 | 0.000 | 10299 | 0.687 | 18 | 0.001 | 6 | 0.687 | 0.002 | 0.6890000000000001 | ||||||||
| 26313 | C26313T|(envelope_protein:TTC67-69ATT(F23I)) | 4640 | 0.309 | 1 | 0.309 | 0 | 0.309 | ||||||||||||||||||
| 26337 | A26337T|(envelope_protein:A93T(L31L)) | 2 | 0.000 | 7 | 0.000 | 7 | 0.000 | 13 | 0.001 | 4644 | 0.310 | 13 | 0.000 | 6 | 0.31 | 0.001 | 0.311 | ||||||||
| 26394 | T26394C|(envelope_protein:T150C(S50S)) | 3 | 0.000 | 14 | 0.000 | 6 | 0.000 | 17 | 0.000 | 9 | 0.000 | 41222 | 0.231 | 6 | 0.231 | 0.0 | 0.231 | ||||||||
| 26416 | G26416A|(envelope_protein:G172A(V58I)) | 15 | 0.000 | 1 | 0.000 | 8 | 0.000 | 1 | 0.000 | 54488 | 0.304 | 5 | 0.304 | 0.0 | 0.304 | ||||||||||
| 26434 | A26434G|(envelope_protein:A190G(N64D)) | 5 | 0.000 | 12 | 0.000 | 1 | 0.000 | 15 | 0.000 | 6 | 0.000 | 41109 | 0.230 | 6 | 0.23 | 0.0 | 0.23 | ||||||||
| 26441 | A26441G|(envelope_protein:A197G(N66S)) | 11 | 0.000 | 16 | 0.000 | 7 | 0.000 | 27 | 0.000 | 9 | 0.000 | 41155 | 0.230 | 6 | 0.23 | 0.0 | 0.23 | ||||||||
| 26465 | TGG26465-26467del|(envelope_protein:CTGGTC220-225CTCdel(LV74-75Ldel)) | 41105 | 0.230 | 1 | 0.23 | 0 | 0.23 | ||||||||||||||||||
| 26466 | G26466T|(envelope_protein:G222T(L74L)) | 14 | 0.000 | 22 | 0.000 | 2 | 0.000 | 30 | 0.000 | 10 | 0.000 | 31072 | 0.174 | 6 | 0.174 | 0.0 | 0.174 | ||||||||
| 26478 | C26478T | 2 | 0.000 | 3 | 0.000 | 3 | 0.000 | 2 | 0.000 | 30911 | 0.173 | 5 | 0.173 | 0.0 | 0.173 | ||||||||||
| 26485 | TTATATTAG26485-26493del | 23223 | 0.130 | 1 | 0.13 | 0 | 0.13 | ||||||||||||||||||
| 26485 | TTATATTAGTTTTTCTGTTTGGAACTTTAATT26485-26516del | 132711 | 0.742 | 1 | 0.742 | 0 | 0.742 | ||||||||||||||||||
| 26529 | G26529A|(membrane_glycoprotein:GAT7-9AGT(D3S)) | 23260 | 0.130 | 1 | 0.13 | 0 | 0.13 | ||||||||||||||||||
| 26530 | A26530G|(membrane_glycoprotein:A8G(D3G)) | 1 | 0.000 | 2 | 0.000 | 133067 | 0.744 | 3 | 0.744 | 0.0 | 0.744 | ||||||||||||||
| 26530 | A26530G|(membrane_glycoprotein:GAT7-9AGT(D3S)) | 23260 | 0.130 | 1 | 0.13 | 0 | 0.13 | ||||||||||||||||||
| 26533 | C26533A|(membrane_glycoprotein:C11A(S4Y)) | 9 | 0.000 | 23 | 0.000 | 8 | 0.000 | 35 | 0.000 | 16 | 0.000 | 133158 | 0.745 | 6 | 0.745 | 0.0 | 0.745 | ||||||||
| linkedubiq | 26577 | C26577G|(membrane_glycoprotein:C55G(Q19E)) | 33675 | 0.991 | 81570 | 0.992 | 25135 | 0.992 | 108987 | 0.991 | 34977 | 0.991 | 179190 | 0.991 | 1 | 1.000 | 2 | 1.000 | 1 | 1.000 | 9 | 0.991 | 7.957 | 8.948 | |
| 26605 | T26605A|(membrane_glycoprotein:T83A(F28Y)) | 18 | 0.001 | 14 | 0.000 | 13 | 0.001 | 61 | 0.001 | 15 | 0.000 | 40940 | 0.230 | 6 | 0.23 | 0.003 | 0.233 | ||||||||
| 26681 | C26681A|(membrane_glycoprotein:C159A(F53L)) | 14 | 0.000 | 20 | 0.000 | 21 | 0.000 | 50 | 0.000 | 20 | 0.000 | 31434 | 0.110 | 12 | 0.000 | 30 | 0.001 | 8 | 0.11 | 0.001 | 0.111 | ||||
| linked | 26702 | A26702C|(membrane_glycoprotein:A180C(V60V)) | 10 | 0.000 | 7 | 0.000 | 19 | 0.000 | 25 | 0.000 | 12 | 0.000 | 23235 | 0.081 | 17 | 0.001 | 4 | 0.000 | 8 | 0.081 | 0.001 | 0.082 | |||
| linkedubiq | 26709 | G26709A|(membrane_glycoprotein:G187A(A63T)) | 48321 | 0.996 | 82193 | 0.998 | 70553 | 0.994 | 162608 | 0.996 | 52624 | 0.996 | 279061 | 0.977 | 25593 | 0.990 | 45133 | 0.995 | 2 | 0.667 | 9 | 0.977 | 7.632 | 8.609 | |
| 26730 | G26730A|(membrane_glycoprotein:G208A(V70I)) | 2 | 0.000 | 8 | 0.000 | 2 | 0.000 | 64105 | 0.592 | 1 | 0.000 | 5 | 0.592 | 0.0 | 0.592 | ||||||||||
| 26842 | G26842A|(membrane_glycoprotein:G320A(R107H)) | 1 | 0.000 | 4 | 0.000 | 3 | 0.000 | 3 | 0.000 | 31690 | 0.289 | 2 | 0.000 | 1 | 0.000 | 7 | 0.289 | 0.0 | 0.289 | ||||||
| 26873 | C26873T|(membrane_glycoprotein:C351T(N117N)) | 3 | 0.000 | 3 | 0.000 | 5 | 0.000 | 1 | 0.000 | 64638 | 0.590 | 2 | 0.000 | 2 | 0.000 | 7 | 0.59 | 0.0 | 0.59 | ||||||
| 26908 | T26908A|(membrane_glycoprotein:T386A(L129Q)) | 3 | 0.000 | 3 | 0.000 | 6 | 0.000 | 7 | 0.000 | 109251 | 0.998 | 6 | 0.000 | 3 | 0.000 | 7 | 0.998 | 0.0 | 0.998 | ||||||
| 26934 | C26934A|(membrane_glycoprotein:C412A(L138I)) | 4 | 0.000 | 3 | 0.000 | 7 | 0.000 | 2 | 0.000 | 109243 | 0.998 | 3 | 0.000 | 9 | 0.000 | 7 | 0.998 | 0.0 | 0.998 | ||||||
| 27056 | T27056-27056del|(membrane_glycoprotein:534-534del(178fs)) | 8 | 0.000 | 3 | 0.000 | 6 | 0.000 | 10 | 0.000 | 24651 | 0.430 | 3 | 0.000 | 2 | 0.000 | 7 | 0.43 | 0.0 | 0.43 | ||||||
| 27143 | C27143A|(membrane_glycoprotein:C621A(N207K)) | 235 | 0.002 | 87 | 0.002 | 117 | 0.002 | 197 | 0.002 | 32836 | 0.567 | 122 | 0.001 | 1085 | 0.005 | 7 | 0.567 | 0.014 | 0.581 | ||||||
| 27147 | G27147A|(membrane_glycoprotein:G625A(D209N)) | 22 | 0.000 | 6 | 0.000 | 11 | 0.000 | 11 | 0.000 | 32744 | 0.566 | 19 | 0.000 | 60 | 0.000 | 7 | 0.566 | 0.0 | 0.566 | ||||||
| 27188 | G27188T|(membrane_glycoprotein:G666T(Q222H)) | 107 | 0.001 | 18 | 0.000 | 55 | 0.001 | 83 | 0.001 | 31962 | 0.564 | 62 | 0.001 | 273 | 0.001 | 7 | 0.564 | 0.005 | 0.569 | ||||||
| 27247 | C27247T|(ORF6_protein:C46T(L16L)) | 5 | 0.000 | 4 | 0.000 | 11 | 0.000 | 14 | 0.000 | 56480 | 0.552 | 4 | 0.000 | 8 | 0.000 | 7 | 0.552 | 0.0 | 0.552 | ||||||
| 27253 | ATTATGAGGACTTTTAAAGTTTCCA27253-27277del|(ORF6_protein:ATTATGAGGACTTTTAAAGTTTCCATTTGG52-81TTTdel(IMRTFKVSIW18-27Fdel)) | 31741 | 0.310 | 1 | 0.31 | 0 | 0.31 | ||||||||||||||||||
| linked | 27259 | A27259C|(ORF6_protein:A58C(R20R)) | 165694 | 0.997 | 5 | 0.625 | 90615 | 0.998 | 117818 | 0.997 | 177159 | 0.997 | 70152 | 0.686 | 152186 | 0.997 | 264476 | 0.996 | 2 | 1.000 | 9 | 0.686 | 7.607 | 8.293000000000001 | |
| 27281 | GG27281-27282del|(ORF6_protein:ATTATGAGGACTTTTAAAGTTTCCATTTGG52-81TTTdel(IMRTFKVSIW18-27Fdel)) | 31741 | 0.310 | 1 | 0.31 | 0 | 0.31 | ||||||||||||||||||
| 27290 | ATT27290-27292del|(ORF6_protein:GATTAC88-93GACdel(DY30-31Ddel)) | 31931 | 0.312 | 1 | 0.312 | 0 | 0.312 | ||||||||||||||||||
| 27305 | T27305G|(ORF6_protein:T104G(L35R)) | 4 | 0.000 | 11 | 0.000 | 22 | 0.000 | 19 | 0.000 | 56339 | 0.551 | 20 | 0.000 | 4 | 0.000 | 7 | 0.551 | 0.0 | 0.551 | ||||||
| ubiq | 27382 | G27382C|(ORF6_protein:GAT181-183CTC(D61L)) | 16052 | 0.996 | 2 | 1.000 | 44981 | 0.997 | 42675 | 0.997 | 52789 | 0.997 | 45818 | 0.997 | 68124 | 0.997 | 66657 | 0.997 | 2 | 0.667 | 9 | 0.997 | 7.648 | 8.645 | |
| ubiq | 27383 | A27383T|(ORF6_protein:GAT181-183CTC(D61L)) | 16052 | 0.996 | 2 | 1.000 | 44981 | 0.997 | 42675 | 0.997 | 52789 | 0.997 | 45818 | 0.997 | 68124 | 0.997 | 66657 | 0.997 | 2 | 0.667 | 9 | 0.997 | 7.648 | 8.645 | |
| ubiq | 27384 | T27384C|(ORF6_protein:GAT181-183CTC(D61L)) | 16052 | 0.996 | 2 | 1.000 | 44981 | 0.997 | 42675 | 0.997 | 52789 | 0.997 | 45818 | 0.997 | 68124 | 0.997 | 66657 | 0.997 | 2 | 0.667 | 9 | 0.997 | 7.648 | 8.645 | |
| 27649 | C27649T|(ORF7a_protein:C256T(L86L)) | 7 | 0.000 | 3 | 0.000 | 5 | 0.000 | 2 | 0.000 | 71793 | 0.711 | 2 | 0.000 | 4 | 0.000 | 7 | 0.711 | 0.0 | 0.711 | ||||||
| 27752 | Delta | C27752T|(ORF7a_protein:C359T(T120I)) | 9 | 0.000 | 13 | 0.000 | 15 | 0.000 | 4 | 0.000 | 59786 | 0.588 | 4 | 0.000 | 29 | 0.000 | 7 | 0.588 | 0.0 | 0.588 | |||||
| 27770 | A27770T|(ORF7b:A15T(S5S)) | 48 | 0.000 | 52 | 0.000 | 77 | 0.001 | 32 | 0.000 | 59650 | 0.591 | 29 | 0.001 | 229 | 0.001 | 7 | 0.591 | 0.003 | 0.594 | ||||||
| linkedubiq | 27807 | C27807T|(ORF7b:C52T(L18L)) | 115709 | 0.995 | 125989 | 0.995 | 135452 | 0.995 | 79003 | 0.995 | 100419 | 0.995 | 45972 | 0.995 | 379109 | 0.997 | 5 | 1.000 | 8 | 0.995 | 6.9719999999999995 | 7.967 | |||
| 27915 | G27915T|(ORF8_protein:G22T(G8*)) | 68 | 0.000 | 30 | 0.000 | 55 | 0.000 | 51 | 0.000 | 11855 | 0.103 | 13 | 0.000 | 217 | 0.001 | 7 | 0.103 | 0.001 | 0.104 | ||||||
| linkedubiq | 28271 | A28271T | 210482 | 0.997 | 303295 | 0.997 | 181852 | 0.997 | 268465 | 0.997 | 192695 | 0.998 | 102537 | 0.996 | 158135 | 0.997 | 503912 | 0.998 | 14 | 1.000 | 9 | 0.996 | 7.981 | 8.977 | |
| 28303 | A28303G|(nucleocapsid_phosphoprotein:A30G(R10R)) | 33 | 0.000 | 66 | 0.000 | 34 | 0.000 | 39 | 0.000 | 18 | 0.000 | 102583 | 0.997 | 25 | 0.000 | 35 | 0.000 | 8 | 0.997 | 0.0 | 0.997 | ||||
| 28310 | C28310T|(nucleocapsid_phosphoprotein:CCC37-39TTC(P13F)) | 19 | 0.000 | 10 | 0.000 | 11 | 0.000 | 13 | 0.000 | 3 | 0.000 | 101977 | 0.991 | 10 | 0.000 | 6 | 0.000 | 8 | 0.991 | 0.0 | 0.991 | ||||
| 28311 | C28311T|(nucleocapsid_phosphoprotein:CCC37-39TTC(P13F)) | 19 | 0.000 | 10 | 0.000 | 11 | 0.000 | 13 | 0.000 | 3 | 0.000 | 101977 | 0.991 | 10 | 0.000 | 6 | 0.000 | 8 | 0.991 | 0.0 | 0.991 | ||||
| linkedubiq | 28362 | GAGAACGCA28362-28370del|(nucleocapsid_phosphoprotein:GGAGAACGCAGT88-99GGTdel(GERS30-33Gdel)) | 210184 | 0.997 | 303363 | 0.997 | 181519 | 0.998 | 268162 | 0.998 | 192055 | 0.997 | 102511 | 0.997 | 157914 | 0.998 | 503068 | 0.998 | 13 | 0.929 | 9 | 0.997 | 7.912 | 8.909 | |
| 28382 | RATG13 | T28382C|(nucleocapsid_phosphoprotein:T109C(S37P)) | 58 | 0.000 | 78 | 0.000 | 35 | 0.000 | 59 | 0.000 | 41 | 0.000 | 102564 | 0.997 | 32 | 0.000 | 46 | 0.000 | 8 | 0.997 | 0.0 | 0.997 | |||
| 28472 | C28472T|(nucleocapsid_phosphoprotein:C199T(P67S)) | 14 | 0.000 | 20 | 0.000 | 12 | 0.000 | 14 | 0.000 | 11 | 0.000 | 102444 | 0.998 | 8 | 0.000 | 18 | 0.000 | 8 | 0.998 | 0.0 | 0.998 | ||||
| 28541 | G28541T|(nucleocapsid_phosphoprotein:G268T(A90S)) | 13 | 0.000 | 37 | 0.000 | 7 | 0.000 | 21 | 0.000 | 16 | 0.000 | 24357 | 0.250 | 22 | 0.000 | 59 | 0.000 | 358 | 0.000 | 9 | 0.25 | 0.0 | 0.25 | ||
| 28550 | C28550T|(nucleocapsid_phosphoprotein:C277T(R93*)) | 14 | 0.000 | 13 | 0.000 | 6 | 0.000 | 8 | 0.000 | 10 | 0.000 | 29007 | 0.298 | 13 | 0.000 | 4 | 0.000 | 36 | 0.000 | 9 | 0.298 | 0.0 | 0.298 | ||
| linked | 28603 | RATG13 | C28603T|(nucleocapsid_phosphoprotein:C330T(F110F)) | 6 | 0.000 | 7 | 0.000 | 3 | 0.000 | 2 | 0.000 | 28990 | 0.297 | 29101 | 0.182 | 8 | 0.000 | 7 | 0.297 | 0.182 | 0.479 | ||||
| 28882 | G28882A|(nucleocapsid_phosphoprotein:G609A(R203R)) | 26 | 0.000 | 7 | 0.000 | 10 | 0.000 | 22445 | 0.629 | 10 | 0.000 | 8 | 0.000 | 6 | 0.629 | 0.0 | 0.629 | ||||||||
| linkedubiq | 28883 | G28883C|(nucleocapsid_phosphoprotein:G610C(G204R)) | 123246 | 0.997 | 64 | 1.000 | 47116 | 0.714 | 46918 | 0.997 | 39319 | 0.997 | 35588 | 0.997 | 45708 | 0.997 | 118200 | 0.998 | 1 | 1.000 | 9 | 0.997 | 7.7 | 8.697000000000001 | |
| 29095 | RATG13 | C29095T|(nucleocapsid_phosphoprotein:C822T(F274F)) | 20 | 0.000 | 7 | 0.000 | 4 | 0.000 | 2 | 0.000 | 22508 | 0.628 | 3 | 0.000 | 6 | 0.000 | 7 | 0.628 | 0.0 | 0.628 | |||||
| 29218 | C29218T|(nucleocapsid_phosphoprotein:C945T(F315F)) | 46 | 0.000 | 13 | 0.000 | 12 | 0.000 | 16 | 0.000 | 108226 | 0.365 | 8 | 0.000 | 14 | 0.000 | 7 | 0.365 | 0.0 | 0.365 | ||||||
| 29363 | C29363T|(nucleocapsid_phosphoprotein:C1090T(P364S)) | 30 | 0.000 | 15 | 0.000 | 12 | 0.000 | 19 | 0.000 | 109274 | 0.362 | 8 | 0.000 | 44 | 0.000 | 7 | 0.362 | 0.0 | 0.362 | ||||||
| linked | 29510 | A29510C|(nucleocapsid_phosphoprotein:A1237C(S413R)) | 1008037 | 0.999 | 15 | 1.000 | 355329 | 0.999 | 249216 | 0.999 | 356200 | 0.999 | 135894 | 0.276 | 375275 | 0.999 | 1 | 1.000 | 935827 | 0.998 | 9 | 0.276 | 7.993 | 8.269 | |
| 29524 | T29524A|(nucleocapsid_phosphoprotein:T1251A(T417T)) | 394 | 0.000 | 132 | 0.000 | 90 | 0.000 | 131 | 0.000 | 59662 | 0.121 | 120 | 0.000 | 195 | 0.000 | 7 | 0.121 | 0.0 | 0.121 | ||||||
| 29730 | CACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTG29730-29766del | 59686 | 0.302 | 1 | 0.302 | 0 | 0.302 | ||||||||||||||||||
| linked | 29734 | GAGGCCACGCGGAGTACGATCGAGTG29734-29759del | 538838 | 0.998 | 5 | 1.000 | 209413 | 0.938 | 81685 | 0.998 | 107424 | 0.998 | 136575 | 0.691 | 232831 | 0.998 | 7 | 1.000 | 8 | 0.691 | 6.93 | 7.6209999999999996 | |||
| 29875 | A29875C | 2 | 0.500 | 1 | 0.5 | 0 | 0.5 |