This table shows the complete data from the mutations.tsv file exactly as it appears in the source. Scroll horizontally to see all columns.
| SRR34495487(4206130) | SRR34495501(2654907) | SRR34495603(3434375) | SRR34495605(3145175) | SRR34495606(4223426) | SRR34495608(4037058) | SRR34592166(7039763) | SRR34592180(7232312) | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| "('2025-07-03', '115000')" | "('2025-07-03', '115000')" | "('2025-07-02', '539116')" | "('2025-07-02', '529541')" | "('2025-07-01', '2600000')" | "('2025-07-01', '1000000')" | "('2025-07-07', '120000')" | "('2025-07-07', '200000')" | ||||||||||||||||
| Sequences | Count | Abundance | Count | Abundance | Count | Abundance | Count | Abundance | Count | Abundance | Count | Abundance | Count | Abundance | Count | Abundance | Total samples | Positives Sum | Negatives Sum | Total Sum | |||
| 2523 | C2523T|(ORF1ab_polyprotein:C2258T(T753I))|(ORF1a_polyprotein:C2258T(T753I)) | 1 | 0.000 | 2 | 0.000 | 54365 | 0.998 | 4 | 0.000 | 4 | 0.998 | 0.0 | 0.998 | ||||||||||
| ubiq | 3037 | "RATG13,Delta" | C3037T|(ORF1ab_polyprotein:C2772T(F924F))|(ORF1a_polyprotein:C2772T(F924F)) | 3322 | 0.997 | 2630 | 0.997 | 1307 | 0.999 | 2909 | 0.995 | 12605 | 0.998 | 23492 | 0.997 | 20832 | 0.996 | 7 | 0.997 | 5.982 | 6.979 | ||
| 3335 | GAAGTG3335-3340del|(ORF1ab_polyprotein:3070-3075del(EV1024-1025del))|(ORF1a_polyprotein:3070-3075del(EV1024-1025del)) | 474 | 0.998 | 1 | 0.998 | 0 | 0.998 | ||||||||||||||||
| ubiq | 9344 | C9344T|(ORF1ab_polyprotein:C9079T(L3027F))|(ORF1a_polyprotein:C9079T(L3027F)) | 53736 | 0.998 | 2496 | 0.999 | 31749 | 0.998 | 23519 | 0.998 | 1 | 1.000 | 114983 | 0.998 | 55928 | 0.998 | 7 | 1.0 | 5.989 | 6.989 | |||
| ubiq | 9424 | A9424G|(ORF1ab_polyprotein:A9159G(V3053V))|(ORF1a_polyprotein:A9159G(V3053V)) | 46635 | 0.998 | 25120 | 0.998 | 21287 | 0.998 | 1 | 1.000 | 114901 | 0.998 | 50203 | 0.998 | 6 | 1.0 | 4.99 | 5.99 | |||||
| ubiq | 9534 | C9534T|(ORF1ab_polyprotein:C9269T(T3090I))|(ORF1a_polyprotein:C9269T(T3090I)) | 46628 | 0.998 | 25015 | 0.998 | 21204 | 0.998 | 1 | 1.000 | 114979 | 0.997 | 50162 | 0.998 | 6 | 1.0 | 4.989 | 5.989 | |||||
| 9985 | RATG13 | C9985T|(ORF1ab_polyprotein:C9720T(D3240D))|(ORF1a_polyprotein:C9720T(D3240D)) | 5108 | 0.998 | 1 | 0.998 | 0 | 0.998 | |||||||||||||||
| 10012 | T10012A|(ORF1ab_polyprotein:T9747A(L3249L))|(ORF1a_polyprotein:T9747A(L3249L)) | 7 | 0.001 | 2 | 0.001 | 1 | 0.001 | 6 | 0.002 | 5110 | 0.998 | 8 | 0.003 | 3 | 0.001 | 7 | 0.998 | 0.009000000000000000 | 1.007 | ||||
| 10029 | C10029T|(ORF1ab_polyprotein:ACC9763-9765ATT(T3255I))|(ORF1a_polyprotein:ACC9763-9765ATT(T3255I)) | 5083 | 0.993 | 1 | 0.993 | 0 | 0.993 | ||||||||||||||||
| 10030 | C10030T|(ORF1ab_polyprotein:ACC9763-9765ATT(T3255I))|(ORF1a_polyprotein:ACC9763-9765ATT(T3255I)) | 5083 | 0.993 | 1 | 0.993 | 0 | 0.993 | ||||||||||||||||
| 10082 | T10082A|(ORF1ab_polyprotein:T9817A(S3273T))|(ORF1a_polyprotein:T9817A(S3273T)) | 13 | 0.001 | 2 | 0.001 | 2 | 0.001 | 6 | 0.002 | 5142 | 0.992 | 4 | 0.001 | 3 | 0.001 | 7 | 0.992 | 0.007 | 0.999 | ||||
| ubiq | 10447 | RATG13 | G10447A|(ORF1ab_polyprotein:G10182A(R3394R))|(ORF1a_polyprotein:G10182A(R3394R)) | 24460 | 0.998 | 13441 | 0.999 | 16468 | 0.999 | 38621 | 0.999 | 90134 | 0.998 | 5 | 0.998 | 3.995 | 4.993 | ||||||
| ubiq | 10449 | C10449A|(ORF1ab_polyprotein:C10184A(P3395H))|(ORF1a_polyprotein:C10184A(P3395H)) | 24460 | 0.998 | 13433 | 0.998 | 16458 | 0.998 | 38591 | 0.998 | 90073 | 0.998 | 5 | 0.998 | 3.992 | 4.99 | |||||||
| ubiq | 11288 | TCTGGTTTT11288-11296del|(ORF1ab_polyprotein:11023-11031del(SGF3675-3677del))|(ORF1a_polyprotein:11023-11031del(SGF3675-3677del)) | 20290 | 0.999 | 3116 | 0.999 | 5906 | 0.999 | 16363 | 0.999 | 43950 | 0.999 | 62162 | 0.999 | 50099 | 0.999 | 7 | 0.999 | 5.994 | 6.993000000000000 | |||
| 11522 | T11522G|(ORF1ab_polyprotein:T11257G(F3753V))|(ORF1a_polyprotein:T11257G(F3753V)) | 2 | 0.001 | 1 | 0.002 | 5 | 0.001 | 4 | 0.001 | 9168 | 0.998 | 5 | 0.998 | 0.005 | 1.003 | ||||||||
| 11537 | A11537G|(ORF1ab_polyprotein:A11272G(I3758V))|(ORF1a_polyprotein:A11272G(I3758V)) | 9171 | 0.992 | 1 | 0.992 | 0 | 0.992 | ||||||||||||||||
| 11830 | A11830G|(ORF1ab_polyprotein:A11565G(V3855V))|(ORF1a_polyprotein:A11565G(V3855V)) | 28 | 0.000 | 11 | 0.000 | 9 | 0.000 | 6918 | 0.761 | 22 | 0.000 | 5 | 0.761 | 0.0 | 0.761 | ||||||||
| 11970 | A11970C|(ORF1ab_polyprotein:A11705C(K3902T))|(ORF1a_polyprotein:A11705C(K3902T)) | 97 | 0.000 | 35 | 0.000 | 31 | 0.000 | 1 | 0.500 | 204 | 0.001 | 5 | 0.5 | 0.001 | 0.501 | ||||||||
| 11992 | A11992T|(ORF1ab_polyprotein:A11727T(E3909D))|(ORF1a_polyprotein:A11727T(E3909D)) | 61 | 0.000 | 25 | 0.000 | 27 | 0.000 | 1 | 0.500 | 80 | 0.000 | 5 | 0.5 | 0.0 | 0.5 | ||||||||
| 12017 | T12017G|(ORF1ab_polyprotein:T11752G(L3918V))|(ORF1a_polyprotein:T11752G(L3918V)) | 45 | 0.000 | 21 | 0.000 | 15 | 0.000 | 1 | 1.000 | 50 | 0.000 | 5 | 1.0 | 0.0 | 1.0 | ||||||||
| 12021 | T12021G|(ORF1ab_polyprotein:T11756G(L3919R))|(ORF1a_polyprotein:T11756G(L3919R)) | 24 | 0.000 | 12 | 0.000 | 4 | 0.000 | 1 | 1.000 | 34 | 0.000 | 5 | 1.0 | 0.0 | 1.0 | ||||||||
| 12026 | A12026C|(ORF1ab_polyprotein:A11761C(M3921L))|(ORF1a_polyprotein:A11761C(M3921L)) | 147 | 0.000 | 79 | 0.001 | 44 | 0.000 | 1 | 1.000 | 200 | 0.001 | 5 | 1.0 | 0.002 | 1.002 | ||||||||
| 14074 | 14074-insertGA|(ORF1ab_polyprotein:13810insertGA(4604fs)) | 4 | 0.182 | 2 | 0.000 | 2 | 0.182 | 0.0 | 0.182 | ||||||||||||||
| linkedubiq | 14408 | Delta | C14408T|(ORF1ab_polyprotein:C14144T(P4715L)) | 25095 | 0.999 | 37051 | 0.999 | 116113 | 0.999 | 55357 | 0.999 | 145622 | 0.999 | 86433 | 0.999 | 6 | 0.999 | 4.995 | 5.994 | ||||
| 15656 | C15656T|(ORF1ab_polyprotein:C15392T(T5131I)) | 1 | 0.000 | 2 | 0.000 | 42506 | 0.999 | 2 | 0.000 | 4 | 0.999 | 0.0 | 0.999 | ||||||||||
| 16228 | G16228C|(ORF1ab_polyprotein:G15964C(V5322L)) | 2 | 0.000 | 2 | 0.000 | 1 | 0.000 | 4 | 0.000 | 1 | 1.000 | 6 | 0.000 | 6 | 1.0 | 0.0 | 1.0 | ||||||
| 16233 | A16233C|(ORF1ab_polyprotein:A15969C(L5323F)) | 11 | 0.000 | 2 | 0.000 | 3 | 0.000 | 7 | 0.000 | 10 | 0.000 | 1 | 1.000 | 23 | 0.000 | 7 | 1.0 | 0.0 | 1.0 | ||||
| 16239 | T16239A|(ORF1ab_polyprotein:T15975A(A5325A)) | 2 | 0.000 | 4 | 0.000 | 1 | 0.000 | 4 | 0.000 | 1 | 1.000 | 4 | 0.000 | 6 | 1.0 | 0.0 | 1.0 | ||||||
| 16254 | T16254A|(ORF1ab_polyprotein:T15990A(V5330V)) | 18 | 0.000 | 12 | 0.000 | 9 | 0.000 | 5 | 0.000 | 15 | 0.000 | 1 | 1.000 | 21 | 0.000 | 7 | 1.0 | 0.0 | 1.0 | ||||
| 16258 | T16258A|(ORF1ab_polyprotein:T15994A(C5332S)) | 5 | 0.000 | 1 | 0.000 | 5 | 0.000 | 7 | 0.000 | 1 | 1.000 | 11 | 0.000 | 6 | 1.0 | 0.0 | 1.0 | ||||||
| 16264 | T16264A|(ORF1ab_polyprotein:T16000A(S5334T)) | 27 | 0.000 | 18 | 0.000 | 7 | 0.000 | 11 | 0.000 | 22 | 0.000 | 1 | 1.000 | 36 | 0.000 | 7 | 1.0 | 0.0 | 1.0 | ||||
| 16268 | A16268C|(ORF1ab_polyprotein:A16004C(Q5335P)) | 35 | 0.000 | 22 | 0.000 | 7 | 0.000 | 16 | 0.000 | 28 | 0.000 | 1 | 1.000 | 37 | 0.000 | 7 | 1.0 | 0.0 | 1.0 | ||||
| 16294 | A16294T|(ORF1ab_polyprotein:ATA16030-16032TTT(I5344F)) | 6 | 0.000 | 1 | 0.000 | 1 | 0.000 | 1 | 1.000 | 3 | 0.000 | 5 | 1.0 | 0.0 | 1.0 | ||||||||
| 16296 | A16296T|(ORF1ab_polyprotein:ATA16030-16032TTT(I5344F)) | 6 | 0.000 | 1 | 0.000 | 1 | 0.000 | 1 | 1.000 | 3 | 0.000 | 5 | 1.0 | 0.0 | 1.0 | ||||||||
| 16298 | G16298T|(ORF1ab_polyprotein:G16034T(R5345L)) | 25 | 0.000 | 12 | 0.000 | 6 | 0.000 | 9 | 0.000 | 17 | 0.000 | 1 | 1.000 | 33 | 0.000 | 7 | 1.0 | 0.0 | 1.0 | ||||
| 16300 | A16300T|(ORF1ab_polyprotein:A16036T(R5346*)) | 23 | 0.000 | 8 | 0.000 | 9 | 0.000 | 17 | 0.000 | 25 | 0.000 | 1 | 1.000 | 19 | 0.000 | 7 | 1.0 | 0.0 | 1.0 | ||||
| 16303 | C16303G|(ORF1ab_polyprotein:CCA16039-16041GAA(P5347E)) | 1 | 1.000 | 1 | 1.0 | 0 | 1.0 | ||||||||||||||||
| 16304 | C16304A|(ORF1ab_polyprotein:CCA16039-16041GAA(P5347E)) | 1 | 1.000 | 1 | 1.0 | 0 | 1.0 | ||||||||||||||||
| 16313 | G16313T|(ORF1ab_polyprotein:G16049T(C5350F)) | 29 | 0.000 | 12 | 0.000 | 6 | 0.000 | 8 | 0.000 | 25 | 0.000 | 1 | 1.000 | 32 | 0.000 | 7 | 1.0 | 0.0 | 1.0 | ||||
| ubiq | 18163 | A18163G|(ORF1ab_polyprotein:A17899G(I5967V)) | 13844 | 0.998 | 13007 | 0.999 | 18109 | 0.998 | 10390 | 0.998 | 1 | 1.000 | 13556 | 0.999 | 45506 | 0.999 | 42180 | 0.999 | 8 | 0.999 | 6.991 | 7.990000000000000 | |
| ubiq | 18492 | A18492G|(ORF1ab_polyprotein:A18228G(P6076P)) | 62 | 0.939 | 2389 | 0.097 | 3697 | 0.999 | 2575 | 0.998 | 1 | 1.000 | 13571 | 0.999 | 26021 | 0.999 | 2 | 0.000 | 8 | 0.999 | 5.032 | 6.031 | |
| 18858 | T18858C|(ORF1ab_polyprotein:T18594C(D6198D)) | 14 | 0.000 | 5 | 0.000 | 5 | 0.000 | 1 | 0.000 | 15 | 0.000 | 177200 | 0.441 | 9 | 0.000 | 43 | 0.000 | 8 | 0.441 | 0.0 | 0.441 | ||
| 18888 | C18888T|(ORF1ab_polyprotein:C18624T(H6208H)) | 3 | 0.000 | 3 | 0.000 | 6 | 0.000 | 176650 | 0.440 | 4 | 0.000 | 28 | 0.000 | 6 | 0.44 | 0.0 | 0.44 | ||||||
| 18978 | A18978G|(ORF1ab_polyprotein:A18714G(Q6238Q)) | 13 | 0.000 | 8 | 0.000 | 10 | 0.000 | 6 | 0.000 | 19 | 0.000 | 403076 | 0.999 | 17 | 0.000 | 86 | 0.000 | 8 | 0.999 | 0.0 | 0.999 | ||
| 20990 | TG20990-20991del|(ORF1ab_polyprotein:20726-20727del(6909fs)) | 1 | 1.000 | 1 | 1.0 | 0 | 1.0 | ||||||||||||||||
| 21013 | C21013A|(ORF1ab_polyprotein:C20749A(H6917N)) | 26 | 0.000 | 10 | 0.000 | 27 | 0.000 | 17 | 0.000 | 26 | 0.000 | 2 | 0.118 | 41 | 0.000 | 7 | 0.118 | 0.0 | 0.118 | ||||
| linkedubiq | 21137 | A21137G|(ORF1ab_polyprotein:A20873G(K6958R)) | 3 | 0.000 | 20979 | 0.184 | 12 | 0.000 | 146976 | 0.996 | 58 | 0.000 | 5 | 0.996 | 0.184 | 1.18 | |||||||
| 21357 | T21357C|(ORF1ab_polyprotein:T21093C(N7031N)) | 1 | 0.000 | 7 | 0.000 | 5 | 0.000 | 147110 | 0.998 | 10 | 0.000 | 5 | 0.998 | 0.0 | 0.998 | ||||||||
| 21404 | 21404-insertT|(ORF1ab_polyprotein:21140insertT(7047fs)) | 1 | 0.167 | 1 | 0.167 | 0 | 0.167 | ||||||||||||||||
| ubiq | 22556 | A22556G|(surface_glycoprotein:A994G(I332V)) | 57460 | 0.997 | 15723 | 0.998 | 25985 | 0.997 | 7302 | 0.997 | 55821 | 0.998 | 55738 | 0.998 | 6 | 0.998 | 4.987 | 5.985 | |||||
| ubiq | 22577 | G22577C|(surface_glycoprotein:GGT1015-1017CAT(G339H)) | 57412 | 0.997 | 15695 | 0.996 | 25976 | 0.997 | 7303 | 0.997 | 55735 | 0.996 | 55632 | 0.996 | 6 | 0.996 | 4.983 | 5.979000000000000 | |||||
| ubiq | 22578 | G22578A|(surface_glycoprotein:GGT1015-1017CAT(G339H)) | 57412 | 0.997 | 15695 | 0.996 | 25976 | 0.997 | 7303 | 0.997 | 55735 | 0.996 | 55632 | 0.996 | 6 | 0.996 | 4.983 | 5.979000000000000 | |||||
| ubiq | 22629 | A22629C|(surface_glycoprotein:A1067C(K356T)) | 57479 | 0.998 | 15723 | 0.998 | 26002 | 0.998 | 7302 | 0.998 | 55843 | 0.998 | 55723 | 0.997 | 6 | 0.998 | 4.989 | 5.987 | |||||
| ubiq | 22674 | C22674T|(surface_glycoprotein:C1112T(S371F)) | 57814 | 0.995 | 15802 | 0.996 | 26129 | 0.995 | 7359 | 0.995 | 56109 | 0.995 | 56375 | 0.994 | 6 | 0.995 | 4.975 | 5.97 | |||||
| ubiq | 22679 | T22679C|(surface_glycoprotein:T1117C(S373P)) | 57814 | 0.996 | 15777 | 0.995 | 26149 | 0.997 | 7370 | 0.997 | 56102 | 0.996 | 56369 | 0.995 | 6 | 0.996 | 4.98 | 5.976000000000000 | |||||
| ubiq | 22686 | C22686T|(surface_glycoprotein:C1124T(S375F)) | 57530 | 0.996 | 15715 | 0.997 | 26040 | 0.997 | 7342 | 0.998 | 55566 | 0.997 | 55912 | 0.995 | 6 | 0.997 | 4.983 | 5.9800000000000000 | |||||
| ubiq | 22688 | A22688G|(surface_glycoprotein:A1126G(T376A)) | 57412 | 0.996 | 15693 | 0.997 | 25979 | 0.996 | 7320 | 0.995 | 55453 | 0.996 | 55852 | 0.995 | 6 | 0.996 | 4.979 | 5.975 | |||||
| ubiq | 22770 | G22770A|(surface_glycoprotein:G1208A(R403K)) | 57492 | 0.997 | 15694 | 0.997 | 26017 | 0.997 | 7315 | 0.997 | 55483 | 0.996 | 55953 | 0.997 | 6 | 0.996 | 4.985 | 5.981 | |||||
| 22812 | A22812C|(surface_glycoprotein:AAG1249-1251ACT(K417T)) | 1 | 0.000 | 2 | 0.000 | 1 | 0.000 | 138890 | 0.713 | 3 | 0.000 | 5 | 0.713 | 0.0 | 0.713 | ||||||||
| 22813 | G22813T|(surface_glycoprotein:AAG1249-1251ACT(K417T)) | 1 | 0.000 | 2 | 0.000 | 1 | 0.000 | 138890 | 0.713 | 3 | 0.000 | 5 | 0.713 | 0.0 | 0.713 | ||||||||
| linkedubiq | 22882 | T22882G|(surface_glycoprotein:T1320G(N440K)) | 1095 | 0.997 | 151 | 1.000 | 378 | 1.000 | 161 | 1.000 | 138818 | 0.998 | 2808 | 0.999 | 33 | 1.000 | 7 | 0.998 | 5.996 | 6.994000000000000 | |||
| 22907 | T22907A|(surface_glycoprotein:T1345A(Y449N)) | 2 | 0.002 | 1 | 0.006 | 138923 | 0.999 | 3 | 0.999 | 0.008 | 1.007 | ||||||||||||
| linkedubiq | 22992 | G22992A|(surface_glycoprotein:G1430A(S477N)) | 1093 | 1.000 | 150 | 1.000 | 379 | 1.000 | 162 | 1.000 | 139011 | 0.999 | 2828 | 0.999 | 36 | 1.000 | 7 | 0.999 | 5.999 | 6.998000000000000 | |||
| linkedubiq | 23008 | TGT23008-23010del|(surface_glycoprotein:GGTGTT1444-1449GGTdel(GV482-483Gdel)) | 1089 | 0.996 | 149 | 0.993 | 378 | 0.997 | 160 | 0.988 | 138749 | 0.997 | 2817 | 0.996 | 36 | 1.000 | 7 | 0.997 | 5.97 | 6.967 | |||
| 23040 | A23040G|(surface_glycoprotein:A1478G(Q493R)) | 138931 | 0.999 | 1 | 0.999 | 0 | 0.999 | ||||||||||||||||
| linkedubiq | 23063 | A23063T|(surface_glycoprotein:A1501T(N501Y)) | 1093 | 1.000 | 150 | 1.000 | 378 | 0.997 | 161 | 0.994 | 138799 | 0.998 | 2812 | 0.998 | 36 | 1.000 | 7 | 0.998 | 5.989 | 6.987 | |||
| 23073 | G23073A|(surface_glycoprotein:G1511A(G504D)) | 1 | 0.001 | 138911 | 0.999 | 2 | 0.999 | 0.001 | 1.0 | ||||||||||||||
| linkedubiq | 23075 | RATG13 | T23075C|(surface_glycoprotein:T1513C(Y505H)) | 1093 | 1.000 | 149 | 0.993 | 379 | 1.000 | 162 | 1.000 | 138925 | 0.999 | 2816 | 0.996 | 36 | 1.000 | 7 | 0.999 | 5.989 | 6.9880000000000000 | ||
| ubiq | 23222 | G23222A|(surface_glycoprotein:G1660A(E554K)) | 164354 | 0.997 | 52029 | 0.997 | 146322 | 0.998 | 98968 | 0.997 | 180956 | 0.998 | 371120 | 0.797 | 6 | 0.998 | 4.786 | 5.784 | |||||
| ubiq | 23403 | Delta | A23403G|(surface_glycoprotein:A1841G(D614G)) | 184990 | 0.999 | 65452 | 0.999 | 148567 | 0.999 | 104849 | 0.999 | 202631 | 0.999 | 477613 | 0.999 | 8909 | 0.996 | 7 | 0.999 | 5.991 | 6.990000000000000 | ||
| 23453 | C23453G|(surface_glycoprotein:C1891G(P631A)) | 3 | 0.000 | 1 | 0.000 | 1 | 0.000 | 21442 | 0.996 | 4 | 0.996 | 0.0 | 0.996 | ||||||||||
| linkedubiq | 23525 | C23525T|(surface_glycoprotein:C1963T(H655Y)) | 20506 | 0.999 | 13439 | 0.999 | 1854 | 1.000 | 5850 | 0.999 | 21469 | 0.999 | 12815 | 0.999 | 9012 | 0.999 | 7 | 0.999 | 5.995 | 6.994 | |||
| linkedubiq | 23599 | T23599G|(surface_glycoprotein:T2037G(N679K)) | 56984 | 0.548 | 22066 | 1.000 | 45121 | 0.999 | 56697 | 0.999 | 305139 | 0.999 | 124549 | 0.999 | 8726 | 1.000 | 7 | 0.999 | 5.545 | 6.544 | |||
| 23604 | C23604A|(surface_glycoprotein:C2042A(P681H)) | 9 | 0.000 | 1 | 0.000 | 1 | 0.000 | 2 | 0.000 | 285577 | 0.999 | 1 | 0.000 | 6 | 0.999 | 0.0 | 0.999 | ||||||
| 23609 | C23609T|(surface_glycoprotein:C2047T(R683W)) | 8 | 0.000 | 2 | 0.000 | 10 | 0.000 | 131581 | 0.460 | 4 | 0.000 | 5 | 0.46 | 0.0 | 0.46 | ||||||||
| 23782 | G23782A|(surface_glycoprotein:G2220A(M740I)) | 4 | 0.000 | 2 | 0.000 | 4 | 0.000 | 131723 | 0.458 | 4 | 0.000 | 5 | 0.458 | 0.0 | 0.458 | ||||||||
| linkedubiq | 23854 | C23854A|(surface_glycoprotein:C2292A(N764K)) | 98060 | 0.996 | 14647 | 0.996 | 43258 | 0.996 | 51534 | 0.997 | 285461 | 0.997 | 124643 | 0.997 | 6 | 0.997 | 4.982 | 5.979 | |||||
| 23860 | T23860-23860del|(surface_glycoprotein:2298-2298del(766fs)) | 2 | 0.000 | 154157 | 0.538 | 2 | 0.000 | 3 | 0.538 | 0.0 | 0.538 | ||||||||||||
| 23945 | A23945T|(surface_glycoprotein:A2383T(K795*)) | 1 | 0.000 | 1 | 0.000 | 1 | 0.000 | 3 | 0.200 | 4 | 0.2 | 0.0 | 0.2 | ||||||||||
| linked | 23948 | G23948C|(surface_glycoprotein:G2386C(D796H)) | 2 | 0.000 | 3 | 0.750 | 2 | 1.000 | 3 | 0.75 | 1.0 | 1.75 | |||||||||||
| 24241 | A24241G|(surface_glycoprotein:A2679G(A893A)) | 484 | 0.998 | 1 | 0.998 | 0 | 0.998 | ||||||||||||||||
| 24416 | G24416A|(surface_glycoprotein:G2854A(V952I)) | 475 | 0.998 | 1 | 0.998 | 0 | 0.998 | ||||||||||||||||
| linkedubiq | 24424 | A24424T|(surface_glycoprotein:A2862T(Q954H)) | 677 | 0.999 | 796 | 0.996 | 934 | 0.998 | 475 | 0.998 | 2435 | 0.999 | 5 | 0.998 | 3.992 | 4.99 | |||||||
| 24437 | T24437A|(surface_glycoprotein:T2875A(L959I)) | 476 | 1.000 | 1 | 1.0 | 0 | 1.0 | ||||||||||||||||
| linkedubiq | 24469 | T24469A|(surface_glycoprotein:T2907A(N969K)) | 678 | 1.000 | 3 | 1.000 | 793 | 0.995 | 931 | 0.996 | 9 | 1.000 | 478 | 0.996 | 2436 | 0.993 | 7 | 0.996 | 5.984 | 6.98 | |||
| linked | 24503 | C24503T|(surface_glycoprotein:C2941T(L981F)) | 473 | 0.007 | 3 | 0.000 | 2 | 0.007 | 0.0 | 0.007 | |||||||||||||
| linkedubiq | 25000 | RATG13 | C25000T|(surface_glycoprotein:C3438T(D1146D)) | 37128 | 0.997 | 105579 | 0.997 | 8682 | 0.997 | 125257 | 0.996 | 165451 | 0.997 | 5 | 0.996 | 3.988 | 4.984 | ||||||
| 25067 | A25067T|(surface_glycoprotein:A3505T(I1169F)) | 12 | 0.000 | 29 | 0.000 | 1 | 0.000 | 125526 | 0.998 | 68 | 0.000 | 5 | 0.998 | 0.0 | 0.998 | ||||||||
| ubiq | 25207 | C25207T|(surface_glycoprotein:C3645T(Y1215Y)) | 2079 | 0.994 | 872 | 0.997 | 2003 | 0.998 | 2964 | 0.997 | 7278 | 0.995 | 6204 | 0.996 | 6 | 0.995 | 4.982 | 5.977 | |||||
| ubiq | 25352 | G25352T|(surface_glycoprotein:G3790T(V1264L)) | 1164 | 0.579 | 2 | 0.001 | 7370 | 0.999 | 5 | 0.001 | 4 | 0.999 | 0.581 | 1.58 | |||||||||
| 25409 | G25409A|(ORF3a_protein:G17A(R6K)) | 3 | 0.000 | 1 | 0.000 | 209601 | 0.966 | 1 | 0.000 | 4 | 0.966 | 0.0 | 0.966 | ||||||||||
| 25420 | RATG13 | A25420C|(ORF3a_protein:A28C(I10L)) | 2 | 0.000 | 2 | 0.000 | 3 | 0.000 | 3 | 0.000 | 209928 | 0.964 | 20 | 0.000 | 6 | 0.964 | 0.0 | 0.964 | |||||
| 25535 | T25535C|(ORF3a_protein:T143C(V48A)) | 6 | 0.000 | 5 | 0.000 | 210202 | 0.999 | 7 | 0.000 | 4 | 0.999 | 0.0 | 0.999 | ||||||||||
| linkedubiq | 25584 | C25584T|(ORF3a_protein:C192T(T64T)) | 16312 | 0.998 | 63617 | 0.997 | 24863 | 0.998 | 19589 | 0.997 | 211318 | 0.997 | 158136 | 0.997 | 6 | 0.997 | 4.987 | 5.984 | |||||
| 25710 | C25710T|(ORF3a_protein:C318T(L106L)) | 220061 | 0.967 | 1 | 0.000 | 2 | 0.967 | 0.0 | 0.967 | ||||||||||||||
| 25936 | C25936G|(ORF3a_protein:C544G(H182D)) | 1 | 0.001 | 10516 | 0.590 | 2 | 0.59 | 0.001 | 0.591 | ||||||||||||||
| 26013 | C26013T|(ORF3a_protein:C621T(F207F)) | 10533 | 0.591 | 1 | 0.591 | 0 | 0.591 | ||||||||||||||||
| 26030 | A26030T|(ORF3a_protein:A638T(Q213L)) | 1 | 0.000 | 1 | 0.000 | 1 | 0.001 | 10521 | 0.591 | 4 | 0.000 | 5 | 0.591 | 0.001 | 0.592 | ||||||||
| 26449 | A26449G|(envelope_protein:A205G(R69G)) | 1 | 0.000 | 2 | 0.000 | 57948 | 0.997 | 2 | 0.000 | 2 | 0.000 | 5 | 0.997 | 0.0 | 0.997 | ||||||||
| 26526 | G26526T|(membrane_glycoprotein:G4T(A2S)) | 7 | 0.001 | 14 | 0.001 | 10 | 0.001 | 14 | 0.001 | 57981 | 0.999 | 51 | 0.001 | 5 | 0.000 | 7 | 0.999 | 0.005 | 1.004 | ||||
| 26530 | A26530G|(membrane_glycoprotein:A8G(D3G)) | 57958 | 0.998 | 1 | 0.998 | 0 | 0.998 | ||||||||||||||||
| 26533 | C26533A|(membrane_glycoprotein:C11A(S4Y)) | 6 | 0.000 | 4 | 0.000 | 7 | 0.000 | 6 | 0.000 | 57978 | 0.999 | 30 | 0.000 | 5 | 0.000 | 7 | 0.999 | 0.0 | 0.999 | ||||
| linkedubiq | 26577 | C26577G|(membrane_glycoprotein:C55G(Q19E)) | 13332 | 0.997 | 13790 | 0.997 | 17148 | 0.997 | 27775 | 0.997 | 57502 | 0.998 | 71550 | 0.996 | 16226 | 0.997 | 7 | 0.998 | 5.981 | 6.979 | |||
| linkedubiq | 26709 | G26709A|(membrane_glycoprotein:G187A(A63T)) | 21557 | 0.998 | 14778 | 0.998 | 52413 | 0.997 | 47289 | 0.998 | 507684 | 0.996 | 151846 | 0.997 | 16259 | 0.999 | 7 | 0.996 | 5.987 | 6.9830000000000000 | |||
| 26873 | C26873T|(membrane_glycoprotein:C351T(N117N)) | 1422 | 0.040 | 245477 | 0.543 | 3 | 0.000 | 3 | 0.543 | 0.04 | 0.5830000000000000 | ||||||||||||
| 26894 | C26894T|(membrane_glycoprotein:C372T(L124L)) | 245713 | 0.544 | 2 | 0.000 | 2 | 0.544 | 0.0 | 0.544 | ||||||||||||||
| 26908 | T26908A|(membrane_glycoprotein:T386A(L129Q)) | 1 | 0.000 | 245670 | 0.543 | 2 | 0.000 | 3 | 0.543 | 0.0 | 0.543 | ||||||||||||
| 26934 | C26934A|(membrane_glycoprotein:C412A(L138I)) | 1 | 0.000 | 6 | 0.000 | 1 | 0.000 | 245684 | 0.544 | 16 | 0.000 | 5 | 0.544 | 0.0 | 0.544 | ||||||||
| 26953 | T26953C|(membrane_glycoprotein:T431C(I144T)) | 5 | 0.000 | 245123 | 0.543 | 6 | 0.000 | 3 | 0.543 | 0.0 | 0.543 | ||||||||||||
| 27050 | T27050C|(membrane_glycoprotein:T528C(L176L)) | 4 | 0.000 | 7 | 0.000 | 12 | 0.000 | 5 | 0.000 | 13 | 0.000 | 153215 | 0.989 | 2 | 0.000 | 7 | 0.989 | 0.0 | 0.989 | ||||
| 27247 | C27247G|(ORF6_protein:C46G(L16V)) | 7 | 0.000 | 3 | 0.000 | 4 | 0.000 | 7 | 0.000 | 147240 | 0.900 | 2 | 0.000 | 6 | 0.9 | 0.0 | 0.9 | ||||||
| linkedubiq | 27259 | A27259C|(ORF6_protein:A58C(R20R)) | 117993 | 0.997 | 97252 | 0.997 | 130632 | 0.997 | 83103 | 0.997 | 256906 | 0.997 | 163125 | 0.997 | 106236 | 0.998 | 1 | 1.000 | 8 | 0.997 | 6.983 | 7.9800000000000000 | |
| linked | 27278 | T27278C|(ORF6_protein:T77C(I26T)) | 13 | 0.000 | 3 | 0.000 | 10 | 0.000 | 5 | 0.000 | 15 | 0.000 | 14460 | 0.088 | 6 | 0.000 | 7 | 0.088 | 0.0 | 0.088 | |||
| 27281 | G27281T|(ORF6_protein:G80T(W27L)) | 58 | 0.000 | 87 | 0.001 | 108 | 0.001 | 79 | 0.001 | 245 | 0.001 | 147466 | 0.901 | 87 | 0.001 | 7 | 0.901 | 0.005 | 0.906 | ||||
| linked | 27290 | A27290C|(ORF6_protein:A89C(D30A)) | 2 | 0.000 | 15924 | 0.097 | 1 | 0.000 | 3 | 0.097 | 0.0 | 0.097 | |||||||||||
| 27305 | T27305G|(ORF6_protein:T104G(L35R)) | 2 | 0.000 | 4 | 0.000 | 6 | 0.000 | 1 | 0.000 | 2 | 0.000 | 148613 | 0.909 | 6 | 0.000 | 7 | 0.909 | 0.0 | 0.909 | ||||
| 27322 | T27322C|(ORF6_protein:T121C(S41P)) | 16 | 0.000 | 7 | 0.000 | 8 | 0.000 | 10 | 0.000 | 27 | 0.000 | 147389 | 0.901 | 4 | 0.000 | 7 | 0.901 | 0.0 | 0.901 | ||||
| 27370 | C27370T|(ORF6_protein:C169T(P57S)) | 1 | 0.000 | 1 | 0.000 | 14494 | 0.997 | 3 | 0.000 | 4 | 0.997 | 0.0 | 0.997 | ||||||||||
| linkedubiq | 27382 | G27382C|(ORF6_protein:GAT181-183CTC(D61L)) | 57927 | 0.997 | 46633 | 0.998 | 40944 | 0.997 | 27453 | 0.998 | 49390 | 0.998 | 14488 | 0.997 | 73117 | 0.997 | 7 | 0.997 | 5.985 | 6.982 | |||
| linkedubiq | 27383 | A27383T|(ORF6_protein:GAT181-183CTC(D61L)) | 57927 | 0.997 | 46633 | 0.998 | 40944 | 0.997 | 27453 | 0.998 | 49390 | 0.998 | 14488 | 0.997 | 73117 | 0.997 | 7 | 0.997 | 5.985 | 6.982 | |||
| linkedubiq | 27384 | T27384C|(ORF6_protein:GAT181-183CTC(D61L)) | 57927 | 0.997 | 46633 | 0.998 | 40944 | 0.997 | 27453 | 0.998 | 49390 | 0.998 | 14488 | 0.997 | 73117 | 0.997 | 7 | 0.997 | 5.985 | 6.982 | |||
| 27445 | T27445C|(ORF7a_protein:T52C(Y18H)) | 2 | 0.000 | 8 | 0.000 | 2 | 0.000 | 2 | 0.000 | 14577 | 0.998 | 9 | 0.000 | 6 | 0.998 | 0.0 | 0.998 | ||||||
| 27530 | T27530A|(ORF7a_protein:T137A(F46Y)) | 6 | 0.000 | 1 | 0.000 | 1 | 0.000 | 1 | 0.000 | 14584 | 0.999 | 5 | 0.000 | 6 | 0.999 | 0.0 | 0.999 | ||||||
| ubiq | 27807 | C27807T|(ORF7b:C52T(L18L)) | 78843 | 0.998 | 88345 | 0.998 | 79097 | 0.998 | 43976 | 0.998 | 123823 | 0.998 | 45154 | 0.998 | 97467 | 0.998 | 7 | 0.998 | 5.9880000000000000 | 6.986 | |||
| ubiq | 27810 | T27810C|(ORF7b:T55C(F19L)) | 78821 | 0.998 | 88307 | 0.998 | 79047 | 0.998 | 43948 | 0.998 | 123746 | 0.998 | 45144 | 0.998 | 97405 | 0.997 | 7 | 0.998 | 5.987 | 6.985 | |||
| 28144 | RATG13 | T28144C|(ORF8_protein:T251C(L84S)) | 5 | 0.000 | 5 | 0.000 | 3 | 0.000 | 1 | 1.000 | 2 | 0.000 | 6 | 0.000 | 6 | 1.0 | 0.0 | 1.0 | |||||
| 28253 | C28253-28253del|(ORF8_protein:TTCATC358-363TTATdel(FI120-121Ldel;fs)) | 1 | 1.000 | 1 | 1.0 | 0 | 1.0 | ||||||||||||||||
| 28256 | C28256-28256del|(ORF8_protein:TTCATC358-363TTATdel(FI120-121Ldel;fs)) | 1 | 1.000 | 1 | 1.0 | 0 | 1.0 | ||||||||||||||||
| 28271 | A28271C | 11 | 0.000 | 3 | 0.000 | 9 | 0.000 | 9 | 0.000 | 27 | 0.000 | 1498 | 1.000 | 6 | 1.0 | 0.0 | 1.0 | ||||||
| linkedubiq | 28311 | C28311T|(nucleocapsid_phosphoprotein:C38T(P13L)) | 163690 | 0.998 | 106134 | 0.998 | 178150 | 0.999 | 83696 | 0.999 | 403685 | 0.998 | 1592 | 0.997 | 2 | 1.000 | 3 | 1.000 | 8 | 0.997 | 6.992 | 7.989 | |
| linked | 28354 | C28354A|(nucleocapsid_phosphoprotein:C81A(N27K)) | 90 | 0.001 | 56 | 0.001 | 96 | 0.001 | 62 | 0.001 | 265 | 0.001 | 9 | 0.001 | 6 | 0.001 | 0.005 | 0.006 | |||||
| linkedubiq | 28362 | GAGAACGCA28362-28370del|(nucleocapsid_phosphoprotein:GGAGAACGCAGT88-99GGTdel(GERS30-33Gdel)) | 163394 | 0.999 | 105753 | 0.999 | 177977 | 0.999 | 83429 | 0.999 | 215150 | 0.532 | 6988 | 0.997 | 1 | 0.500 | 2 | 1.000 | 8 | 0.997 | 6.0280000000000000 | 7.025 | |
| 28382 | RATG13 | T28382C|(nucleocapsid_phosphoprotein:T109C(S37P)) | 17 | 0.000 | 12 | 0.000 | 11 | 0.000 | 7 | 0.000 | 44 | 0.000 | 6968 | 0.994 | 6 | 0.994 | 0.0 | 0.994 | |||||
| linked | 28405 | T28405A|(nucleocapsid_phosphoprotein:T132A(G44G)) | 35 | 0.000 | 18 | 0.000 | 39 | 0.000 | 11 | 0.000 | 83 | 0.000 | 16 | 0.002 | 6 | 0.002 | 0.0 | 0.002 | |||||
| linked | 28417 | T28417A|(nucleocapsid_phosphoprotein:T144A(N48K)) | 1 | 0.000 | 2 | 0.000 | 1 | 0.000 | 1 | 0.000 | 4 | 0.000 | 1 | 0.000 | 6 | 0.0 | 0.0 | 0.0 | |||||
| 28423 | G28423A|(nucleocapsid_phosphoprotein:G150A(A50A)) | 5 | 0.000 | 4 | 0.000 | 3 | 0.000 | 8 | 0.000 | 10 | 0.000 | 6982 | 0.996 | 6 | 0.996 | 0.0 | 0.996 | ||||||
| 28453 | C28453T|(nucleocapsid_phosphoprotein:C180T(G60G)) | 13 | 0.000 | 15 | 0.000 | 6 | 0.000 | 3 | 0.000 | 28 | 0.000 | 6984 | 0.998 | 6 | 0.998 | 0.0 | 0.998 | ||||||
| linkedubiq | 28472 | C28472T|(nucleocapsid_phosphoprotein:C199T(P67S)) | 4 | 0.000 | 3 | 0.000 | 5 | 0.000 | 3 | 0.000 | 18 | 0.000 | 6974 | 0.998 | 1 | 0.250 | 7 | 0.998 | 0.25 | 1.248 | |||
| 29158 | A29158G|(nucleocapsid_phosphoprotein:A885G(G295G)) | 3 | 0.000 | 4 | 0.000 | 8 | 0.000 | 2 | 0.000 | 11 | 0.000 | 6 | 0.750 | 14 | 0.000 | 60 | 0.001 | 8 | 0.75 | 0.001 | 0.751 | ||
| linked | 29510 | A29510C|(nucleocapsid_phosphoprotein:A1237C(S413R)) | 518924 | 0.999 | 321368 | 0.999 | 337412 | 0.999 | 286623 | 0.999 | 556197 | 0.999 | 285136 | 0.447 | 230919 | 0.999 | 1267492 | 0.999 | 8 | 0.447 | 6.993 | 7.44 | |
| 29685 | T29685C | 19 | 0.000 | 6 | 0.000 | 16 | 0.000 | 13 | 0.000 | 15 | 0.000 | 141051 | 0.494 | 22 | 0.000 | 7 | 0.494 | 0.0 | 0.494 | ||||
| linkedubiq | 29734 | GAGGCCACGCGGAGTACGATCGAGTG29734-29759del | 182257 | 0.999 | 118963 | 0.909 | 150189 | 0.999 | 138275 | 0.999 | 260057 | 0.999 | 285262 | 0.999 | 216097 | 0.999 | 7 | 0.999 | 5.904 | 6.903 |