UK-1 - Complete Raw Mutation Data

Full TSV data with all sample columns and abundance information
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Complete Mutations Data

This table shows the complete data from the mutations.tsv file exactly as it appears in the source. Scroll horizontally to see all columns.

Unnamed: 0 Unnamed: 1 Unnamed: 2 Unnamed: 3 ERR10051143 Unnamed: 5 ERR10051775 Unnamed: 7 ERR10051960 Unnamed: 9 ERR10052121 Unnamed: 11 ERR10052194 Unnamed: 13 ERR10057132 Unnamed: 15 ERR10058005 Unnamed: 17 ERR10058425 Unnamed: 19 ERR10058921 Unnamed: 21 ERR10062062 Unnamed: 23 ERR10060593 Unnamed: 25 ERR10063166 Unnamed: 27 ERR10063425 Unnamed: 29 ERR10063739 Unnamed: 31 ERR10064435 Unnamed: 33 ERR10065732 Unnamed: 35 ERR10067409 Unnamed: 37 ERR10068395 Unnamed: 39 ERR10069519 Unnamed: 41 ERR10069605 Unnamed: 43 ERR10071322 Unnamed: 45 ERR10071373 Unnamed: 47 ERR10071416 Unnamed: 49 ERR10071753 Unnamed: 51 ERR9812627 Unnamed: 53 ERR9812780 Unnamed: 55 ERR9812794 Unnamed: 57 ERR9812838 Unnamed: 59 ERR9812936 Unnamed: 61 ERR9812944 Unnamed: 63 ERR9813035 Unnamed: 65 ERR9813038 Unnamed: 67 ERR9813081 Unnamed: 69 ERR9813240 Unnamed: 71 ERR9813250 Unnamed: 73 ERR9813258 Unnamed: 75 ERR9813259 Unnamed: 77 ERR9813285 Unnamed: 79 ERR9813292 Unnamed: 81 ERR9813306 Unnamed: 83 ERR9813438 Unnamed: 85 ERR9813494 Unnamed: 87 ERR9813525 Unnamed: 89 ERR9813539 Unnamed: 91 ERR9813552 Unnamed: 93 ERR9813623 Unnamed: 95 ERR9813631 Unnamed: 97 ERR9813728 Unnamed: 99 ERR10049361 Unnamed: 101 ERR10050224 Unnamed: 103 ERR10051063 Unnamed: 105 ERR10051226 Unnamed: 107 ERR10052178 Unnamed: 109 ERR10053489 Unnamed: 111 ERR10056897 Unnamed: 113 ERR10058286 Unnamed: 115 ERR10059760 Unnamed: 117 ERR10061593 Unnamed: 119 ERR10062436 Unnamed: 121 ERR10063027 Unnamed: 123 ERR10063555 Unnamed: 125 ERR10063681 Unnamed: 127 ERR10065802 Unnamed: 129 ERR10066937 Unnamed: 131 ERR10067110 Unnamed: 133 ERR10067389 Unnamed: 135 ERR10067554 Unnamed: 137 ERR10068666 Unnamed: 139 ERR10068814 Unnamed: 141 ERR10069829 Unnamed: 143 ERR10070527 Unnamed: 145 ERR10071123 Unnamed: 147 ERR9812533 Unnamed: 149 ERR9812564 Unnamed: 151 ERR9812700 Unnamed: 153 ERR9812718 Unnamed: 155 ERR9812786 Unnamed: 157 ERR9812793 Unnamed: 159 ERR9812827 Unnamed: 161 ERR9812830 Unnamed: 163 ERR9812855 Unnamed: 165 ERR9812918 Unnamed: 167 ERR9813080 Unnamed: 169 ERR9813106 Unnamed: 171 ERR9813194 Unnamed: 173 ERR9813284 Unnamed: 175 ERR9813347 Unnamed: 177 ERR9813362 Unnamed: 179 ERR9813394 Unnamed: 181 ERR9813448 Unnamed: 183 ERR9813489 Unnamed: 185 ERR9813557 Unnamed: 187 ERR9813572 Unnamed: 189 ERR9813610 Unnamed: 191 ERR9813659 Unnamed: 193 ERR9813720 Unnamed: 195 Unnamed: 196 Unnamed: 197 Unnamed: 198 Unnamed: 199 Unnamed: 200 Key Unnamed: 202
('2021-11-05', '') ('2021-10-01', '') ('2021-11-14', '') ('2021-10-22', '') ('2021-10-08', '') ('2021-11-24', '') ('2021-12-14', '') ('2021-11-03', '') ('2021-10-04', '') ('2022-02-24', '') ('2022-01-29', '') ('2022-02-24', '') ('2022-02-26', '') ('2022-02-24', '') ('2022-02-26', '') ('2022-02-24', '') ('2021-12-15', '') ('2021-12-03', '') ('2021-11-21', '') ('2022-02-06', '') ('2021-11-28', '') ('2021-10-17', '') ('2021-10-17', '') ('2021-10-10', '') ('2021-06-07', '') ('2021-03-29', '') ('2021-01-30', '') ('2020-11-28', '') ('2021-03-06', '') ('2020-11-26', '') ('2021-01-23', '') ('2020-11-25', '') ('2020-12-29', '') ('2021-04-28', '') ('2021-04-28', '') ('2021-01-06', '') ('2021-02-17', '') ('2021-01-07', '') ('2020-11-12', '') ('2021-03-03', '') ('2021-05-31', '') ('2021-03-26', '') ('2021-03-01', '') ('2021-02-27', '') ('2020-11-10', '') ('2021-02-17', '') ('2021-05-14', '') ('2021-03-12', '') ('2021-10-22', '') ('2022-02-06', '') ('2021-12-03', '') ('2021-12-15', '') ('2021-10-04', '') ('2021-11-03', '') ('2021-11-24', '') ('2021-12-14', '') ('2022-02-26', '') ('2022-02-24', '') ('2022-02-24', '') ('2022-02-26', '') ('2022-02-24', '') ('2022-01-29', '') ('2022-02-24', '') ('2021-11-05', '') ('2021-10-08', '') ('2021-11-14', '') ('2021-11-28', '') ('2021-10-17', '') ('2021-11-21', '') ('2021-10-10', '') ('2021-10-01', '') ('2021-10-17', '') ('2021-01-30', '') ('2021-03-29', '') ('2021-03-12', '') ('2020-12-29', '') ('2021-04-28', '') ('2021-05-14', '') ('2020-11-26', '') ('2021-03-08', '') ('2021-06-07', '') ('2021-02-17', '') ('2020-11-25', '') ('2021-02-27', '') ('2021-01-23', '') ('2021-01-06', '') ('2021-03-01', '') ('2021-05-29', '') ('2021-03-26', '') ('2021-02-17', '') ('2020-11-11', '') ('2020-11-10', '') ('2021-03-03', '') ('2020-11-28', '') ('2021-04-28', '') ('2021-01-07', '') Cryptic Sewershed
Linked/Ubiquitous Position Flagged Sequences Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Count Abundance Total samples Positives Sum Negatives Sum Total Sum Non-Cryptic Sewershed
21 C21T 5812 0.999 2081 0.993 383 0.995 544 0.996 1244 0.999 5 4.982 0 4.982
63 63-insertTC 977 0.034 7314 0.171 16328 0.574 8286 0.096 4875 0.502 105 0.109 3916 0.297 41356 0.414 8 2.197 0 2.197
78 T78A 5 0.014 1574 0.148 2 0.001 4854 0.195 2 0.002 1970 0.048 8 0.002 775 0.117 2939 0.394 112 0.005 869 0.01 280 0.411 1556 0.17 2740 0.765 665 0.052 5105 0.051 6 0.001 6 0.001 18 2.385 0.002 2.387
178 A178G 1688 0.481 4 0.011 293 0.353 699 0.07 12823 0.508 572 0.27 6565 0.157 17978 0.699 1431 0.19 1644 0.067 29243 0.342 575 0.854 1906 0.206 1521 0.449 1033 0.082 56 0.015 8141 0.64 22104 0.219 18 5.61299999999999 0 5.61299999999999
195 195-insertTTC 91 0.136 4837 0.201 7441 0.966 359 0.184 12363 0.316 1210 0.187 3405 0.135 450 0.093 609 0.088 5774 0.242 857 0.029 25346 0.317 88 0.132 6297 0.707 808 0.926 131 0.04 724 0.213 1558 0.126 51278 0.55 19 5.588 0 5.588
209 T209A 92 0.138 13 0.013 15 0.012 4 0.001 5032 0.209 7693 0.999 391 0.2 13339 0.341 1237 0.191 3496 0.139 765 0.159 664 0.096 10043 0.42 26635 0.334 94 0.141 6714 0.754 873 1 144 0.044 778 0.228 1626 0.132 57501 0.617 4 0.014 22 6.168 0.014 6.182
315 G315A|(ORF1ab_polyprotein:G50A(S17N))|(ORF1a_polyprotein:G50A(S17N)) 2 0.002 7 0.001 3162 0.276 459 0.268 4003 0.189 690 0.068 4371 0.675 294 0.054 232 0.071 2084 0.656 462 0.286 1000 0.204 4744 0.108 13 2.858 0 2.858
linked 329 C329A|(ORF1ab_polyprotein:C64A(Q22K))|(ORF1a_polyprotein:C64A(Q22K)) 26 0.963 133 0.158 135 0.074 94 0.001 460 0.001 1491 0.216 6500 0.568 975 0.569 16 0.055 14338 0.677 1557 0.209 2274 0.888 859 0.322 8549 0.837 6466 0.998 208 0.225 5482 0.89 4461 0.817 2270 0.209 48 0.923 2945 0.9 3167 0.997 629 0.975 360 0.117 1385 0.857 2626 0.537 36638 0.832 2 0.002 9297 0.998 29 14.815 1 15.815
linked 344 C344T|(ORF1ab_polyprotein:C79T(L27F))|(ORF1a_polyprotein:C79T(L27F)) 26 0.963 134 0.159 1825 0.997 3816 0.553 10243 0.896 3144 0.998 1711 0.998 16 0.055 19562 0.923 2310 0.31 2270 0.887 179 0.283 766 0.287 10216 1 6472 0.999 210 0.227 5471 0.889 4631 0.848 2767 0.255 51 0.981 2946 0.901 3172 0.998 630 0.977 667 0.217 1384 0.856 3629 0.742 39494 0.897 9302 0.999 28 19.096 0.999 20.095
linked 437 A437G|(ORF1ab_polyprotein:A172G(K58E))|(ORF1a_polyprotein:A172G(K58E)) 802 0.225 1985 0.288 4256 0.392 924 0.57 16 0.056 10128 0.512 391 0.053 301 0.122 416 0.158 4643 0.48 6168 0.995 207 0.228 5050 0.788 3544 0.66 1882 0.176 9 0.188 2626 0.844 1878 0.648 596 0.969 1292 0.853 2109 0.46 29225 0.722 8611 0.995 23 10.387 0.995 11.382
linked 485 T485G|(ORF1ab_polyprotein:T220G(S74A))|(ORF1a_polyprotein:T220G(S74A)) 3 0.005 12 0.001 19 0.01 93 0.015 4360 0.217 493 0.204 17 0.031 7096 0.227 300 0.065 859 0.169 2927 0.158 120 0.019 191 0.138 1233 0.131 3633 0.379 1375 0.078 10947 0.292 46 0.249 6809 0.791 418 0.086 423 0.173 1084 0.374 823 0.129 26589 0.397 4 0.004 2748 0.318 74 0.275 27 4.338 0.597 4.935
510 GTCATGTTA510-518del|(ORF1ab_polyprotein:GGTCATGTTATG244-255GTGdel(GHVM82-85Vdel))|(ORF1a_polyprotein:GGTCATGTTATG244-255GTGdel(GHVM82-85Vdel)) 182 0.003 1146 0.01 154 0.001 1002 0.007 2302 0.25 555 0.991 139 0.176 2731 0.238 1864 0.878 186 0.312 314 0.128 1422 0.161 501 0.168 608 0.144 16275 0.432 53 0.387 292 0.053 1534 0.783 762 0.418 684 0.495 1274 0.717 8878 0.334 22 7.086 0 7.086
511 RATG13 T511C|(ORF1ab_polyprotein:T246C(G82G))|(ORF1a_polyprotein:T246C(G82G)) 41 0.087 5 0.002 2641 0.287 248 0.314 5024 0.438 115 0.193 784 0.319 2121 0.24 104 1 190 0.394 1538 0.365 283 0.041 10943 0.29 36 0.263 4718 0.857 415 0.212 423 0.232 33 0.033 228 0.165 236 0.133 13795 0.518 21 6.383 0 6.383
521 GTT521-523del|(ORF1ab_polyprotein:256-258del(V86del))|(ORF1a_polyprotein:256-258del(V86del)) 1493 0.162 554 0.989 139 0.176 2731 0.238 1863 0.878 186 0.312 314 0.128 1423 0.161 501 0.168 608 0.144 16278 0.432 53 0.387 292 0.053 1534 0.783 762 0.418 684 0.495 1250 0.703 8215 0.309 18 6.936 0 6.936
539 C539T|(ORF1ab_polyprotein:C274T(L92F))|(ORF1a_polyprotein:C274T(L92F)) 8 0.381 128 0.272 275 0.795 2176 0.232 219 0.272 3930 0.34 299 0.103 1881 0.879 321 0.129 1434 0.161 2260 0.751 529 0.123 14867 0.392 95 0.674 296 0.053 1529 0.776 807 0.438 8 0.008 197 0.142 1248 0.696 7127 0.265 21 7.882 0 7.882
554 T554A|(ORF1ab_polyprotein:T289A(Y97N))|(ORF1a_polyprotein:T289A(Y97N)) 274 0.792 2170 0.231 220 0.274 3938 0.341 299 0.103 1887 0.882 322 0.129 1432 0.161 2265 0.753 530 0.123 14875 0.392 95 0.674 296 0.053 1531 0.777 807 0.438 8 0.008 197 0.142 1251 0.698 7130 0.265 19 7.236 0 7.236
560 C560A|(ORF1ab_polyprotein:C295A(R99S))|(ORF1a_polyprotein:C295A(R99S)) 4 0.001 2 0.003 2 0.005 2674 0.285 248 0.308 62 0.232 3721 0.322 752 0.26 90 0.149 789 0.317 2132 0.239 106 1 193 0.393 1626 0.378 298 0.043 10396 0.274 38 0.27 4882 0.88 418 0.212 422 0.229 2 0.002 223 0.16 241 0.134 14083 0.524 4 0.055 25 6.62 0.055 6.675
linked 561 G561A|(ORF1ab_polyprotein:G296A(R99H))|(ORF1a_polyprotein:G296A(R99H)) 274 0.792 148 0.112 2170 0.231 564 0.995 329 0.409 4971 0.43 299 0.103 1887 0.882 189 0.312 322 0.129 1432 0.161 2267 0.753 893 0.208 17607 0.464 94 0.667 295 0.053 1547 0.785 1079 0.586 8 0.008 821 0.59 1243 0.693 8868 0.33 74 0.4 23 9.693 0.4 10.093
569 G569A|(ORF1ab_polyprotein:G304A(E102K))|(ORF1a_polyprotein:G304A(E102K)) 8 0.364 268 0.57 15 0.938 78 0.008 256 0.089 77 0.031 92 0.021 1588 0.227 111 0.108 9 2.356 0 2.356
577 RATG13 T577C|(ORF1ab_polyprotein:T312C(L104L))|(ORF1a_polyprotein:T312C(L104L)) 542 0.058 249 0.31 2481 0.215 203 0.081 106 1 193 0.393 1151 0.268 9889 0.261 32 0.227 2496 0.45 418 0.212 422 0.229 225 0.162 180 0.1 8206 0.305 15 4.271 0 4.271
linked 632 C632T|(ORF1ab_polyprotein:C367T(L123F))|(ORF1a_polyprotein:C367T(L123F)) 30 0.025 254 0.392 926 0.144 3050 0.232 4431 0.233 372 0.162 1889 0.581 459 0.351 12991 0.593 638 0.085 1618 0.386 209 0.099 906 0.154 3299 0.209 695 0.997 153 0.083 7131 0.638 3693 0.395 1706 0.057 23644 0.741 107 0.811 7620 0.839 1135 0.357 2225 0.788 127 0.026 2650 0.739 2707 0.452 59049 0.719 1191 1 43 0.148 30 11.288 1.148 12.436
650 A650G|(ORF1ab_polyprotein:A385G(K129E))|(ORF1a_polyprotein:A385G(K129E)) 295 0.015 1598 0.491 460 0.352 4353 0.197 729 0.095 336 0.071 85 0.04 95 0.016 85 0.046 1016 0.091 1493 0.16 928 0.031 6112 0.192 13 0.098 3821 0.417 1622 0.452 15086 0.183 17 2.947 0 2.947
751 C751T|(ORF1ab_polyprotein:C486T(N162N))|(ORF1a_polyprotein:C486T(N162N)) 80 0.116 227 0.996 29 0.023 12 0.002 10 0.001 1620 0.146 4 0.002 261 0.129 2468 0.201 2170 0.701 915 0.241 5050 0.631 2 0.003 90 0.065 902 0.138 1207 0.228 2560 0.112 7 0.061 1103 0.374 64 0.039 1285 0.347 651 0.135 11657 0.223 23 4.914 0 4.914
949 A949G|(ORF1ab_polyprotein:A684G(V228V))|(ORF1a_polyprotein:A684G(V228V)) 75 0.798 944 0.292 850 0.147 485 0.045 4893 0.375 5783 0.359 557 0.07 3194 0.146 97 0.097 2246 0.156 6794 0.136 11 2.621 0 2.621
1598 G1598T|(ORF1ab_polyprotein:G1333T(G445C))|(ORF1a_polyprotein:G1333T(G445C)) 17 0.005 2 0.001 78 0.003 7 0.001 14 0.009 1709 0.998 70 0.004 1138 0.002 536 0.001 1169 0.002 792 0.001 7 0.001 49 0.008 10 0.004 152 0.025 196 0.031 34 0.002 10604 0.397 5 0.004 4358 0.731 796 0.138 9575 0.651 15 0.002 14 0.004 644 0.05 3305 0.242 2533 0.601 794 0.084 1459 0.322 1952 0.087 1348 0.054 10136 0.397 63 0.164 1073 0.57 6429 0.242 10509 0.854 10512 0.2 24 0.008 16 0.002 21 0.004 22 0.004 4 0.002 5 0.012 6 0.022 7 0.005 4 0.006 15 0.008 7 0.006 52 0.018 9 0.002 9 0.001 8 0.001 14 0.032 53 6.892 0.133 7.025
1616 C1616A|(ORF1ab_polyprotein:C1351A(L451I))|(ORF1a_polyprotein:C1351A(L451I)) 17 0.005 2 0.001 44 0.001 17 0.003 7 0.004 52 0.003 26 0.004 7 0.003 25 0.004 31 0.005 26 0.002 813 0.03 308 0.053 357 0.024 623 0.076 70 0.019 1483 0.102 1682 0.131 1997 0.146 1051 0.111 5 0.001 2909 0.129 2070 0.083 2065 0.081 296 0.771 2936 0.318 3055 0.115 8554 0.163 8 0.003 13 0.001 18 0.004 2 0.007 4 0.003 2 0.003 2 0.001 8 0.001 5 0.002 7 0.001 38 2.388 0.026 2.41399999999999
1758 C1758T|(ORF1ab_polyprotein:C1493T(A498V))|(ORF1a_polyprotein:C1493T(A498V)) 23 0.002 2698 0.045 7789 0.144 3613 0.574 1129 0.034 9529 0.229 7258 0.459 834 0.046 2134 0.084 12982 0.201 3183 0.05 5718 0.246 1233 0.618 9609 0.572 2612 0.841 631 0.008 1135 0.548 49758 0.56 18 5.261 0 5.261
linked 3037 RATG13,Delta C3037T|(ORF1ab_polyprotein:C2772T(F924F))|(ORF1a_polyprotein:C2772T(F924F)) 117 1 2118 0.951 142 1 68 1 382 0.997 14713 0.996 6822 0.997 832 0.99 1255 1 6234 0.996 7926 0.994 79216 0.994 86408 0.994 59087 0.995 96224 0.993 173649 0.994 5406 0.997 5060 0.997 558 0.995 4324 0.952 3044 0.956 179 1 3590 0.994 586 0.993 1016 0.999 1880 0.993 2292 0.934 93 1 1346 0.999 2397 0.999 3351 0.998 378 0.992 1075 0.819 1995 0.995 3358 0.998 8399 0.998 4888 0.999 28 1 679 0.999 302 0.993 3650 0.997 699 0.99 882 0.998 8317 0.992 469 0.996 208 1 39 0.975 364 1 58 1 35 1 517 0.992 2521 0.994 2400 0.998 2528 0.993 617 0.995 5118 0.996 1695 0.997 499 0.992 239 0.976 359 0.989 6 1 2692 0.994 2 0.5 1222 0.99 913 0.998 203 1 655 1 2 1 50 1 603 0.992 2988 0.996 254 0.996 862 0.999 1507 0.984 5939 0.997 75 43.467 30.339 73.806
3193 A3193G|(ORF1ab_polyprotein:A2928G(E976E))|(ORF1a_polyprotein:A2928G(E976E)) 128 0.037 91 1 46 0.032 494 0.219 122 0.11 51 0.031 762 0.233 402 0.053 3069 0.662 385 0.553 150 0.048 3817 0.388 12 3.366 0 3.366
3740 RATG13 A3740G|(ORF1ab_polyprotein:A3475G(I1159V))|(ORF1a_polyprotein:A3475G(I1159V)) 58 0.652 7618 0.919 20057 0.295 23436 0.605 1408 0.091 1234 0.071 6579 0.214 2218 0.036 1322 0.014 7032 0.358 2282 0.298 21956 0.647 1205 0.01 13 4.21 0 4.21
4180 G4180A|(ORF1ab_polyprotein:G3915A(K1305K))|(ORF1a_polyprotein:G3915A(K1305K)) 36 0.016 113 0.005 3374 0.994 1345 0.188 8386 0.797 2416 0.508 414 0.029 1461 0.123 1388 0.088 200 0.007 10 2.755 0 2.755
4486 G4486T|(ORF1ab_polyprotein:G4221T(K1407N))|(ORF1a_polyprotein:G4221T(K1407N)) 2 0.002 2 0.001 2 0.002 30 0.001 231 0.001 451 0.001 67 0.017 58 0.015 861 0.189 2021 0.351 3 0.001 311 0.105 2 0.003 3 0.001 1259 0.914 2 0.001 266 0.155 2 0.001 590 0.092 329 0.021 48 0.03 2 0.002 344 0.658 993 0.129 193 0.065 668 0.144 418 0.044 3 0.001 3 0.001 32 0.002 13 0.001 5 0.002 2 0.003 3 0.002 5 0.004 35 2.946 0.016 2.962
5028 T5028A|(ORF1ab_polyprotein:T4763A(M1588K))|(ORF1a_polyprotein:T4763A(M1588K)) 29 0.004 139 0.063 7 0.002 6 0.001 1645 0.136 23273 0.984 1697 0.139 168 0.988 1285 0.118 179 0.008 823 0.103 8 0.025 294 0.068 156 0.01 9360 0.261 15 2.91 0 2.91
5614 T5614G|(ORF1ab_polyprotein:T5349G(V1783V))|(ORF1a_polyprotein:T5349G(V1783V)) 290 0.381 7 0.002 5 0.002 2905 0.439 257 0.351 229 0.203 643 0.208 614 0.166 155 0.051 474 0.096 746 0.293 1860 0.451 259 0.071 305 0.066 3525 0.268 69 0.037 35 0.34 737 1 570 0.108 783 0.068 382 0.028 15 0.018 22 4.629 0.018 4.647
5648 RATG13 A5648C|(ORF1ab_polyprotein:A5383C(K1795Q))|(ORF1a_polyprotein:A5383C(K1795Q)) 146 0.11 290 0.99 22 0.136 3148 0.997 45 1 252 0.977 229 1 641 0.964 612 0.655 1051 0.964 154 0.203 645 0.329 755 0.881 2458 0.998 297 0.839 633 0.26 3512 0.597 1326 0.714 60 1 579 0.805 732 0.993 568 0.281 45 0.126 786 0.26 3927 0.874 3 0.001 15 0.071 27 16.953 0.072 17.025
linked 6543 C6543T|(ORF1ab_polyprotein:C6278T(T2093I))|(ORF1a_polyprotein:C6278T(T2093I)) 15 1 336 0.997 5014 0.917 3274 0.993 4713 0.993 4369 0.695 1960 0.994 17129 0.898 3163 0.594 2304 0.579 4871 0.558 7250 0.994 5313 0.995 1726 0.416 5977 0.994 7784 0.881 6515 0.906 468 0.989 2395 0.991 4561 0.762 5511 0.876 412 0.315 11518 0.995 26723 0.991 99 0.077 134 0.075 7 0.002 2 0.002 28 0.966 29 20.323 1.12199999999999 21.445
6603 TATC6603-6606del|(ORF1ab_polyprotein:6338-6341del(2113fs))|(ORF1a_polyprotein:6338-6341del(2113fs)) 686 0.035 2386 0.503 130 0.066 2139 0.409 1509 0.173 3284 0.546 3498 0.396 319 0.133 1076 0.075 9132 0.284 10 2.62 0 2.62
6606 C6606T|(ORF1ab_polyprotein:C6341T(S2114F))|(ORF1a_polyprotein:C6341T(S2114F)) 229 0.001 179 0.009 1052 0.222 4390 0.698 13848 0.726 923 0.176 2305 0.58 2797 0.32 3030 0.568 1898 0.457 2648 0.44 2345 0.265 6149 0.857 1563 0.651 20 0.003 3977 0.632 416 0.318 5354 0.166 18 7.08899999999999 0 7.08899999999999
7328 G7328T|(ORF1ab_polyprotein:G7063T(A2355S))|(ORF1a_polyprotein:G7063T(A2355S)) 2 0.004 9 0.002 2 0.005 12 0.007 2487 0.004 1274 0.001 8 0.002 19 0.002 1683 0.08 1365 0.145 1103 0.102 1919 0.117 2 0.005 357 0.024 1794 0.635 344 0.05 2572 0.114 444 0.016 136 0.444 1732 0.255 2 0.003 40 0.002 6 0.001 273 0.03 11790 0.323 2 0.008 26 2.373 0.008 2.381
7666 T7666C|(ORF1ab_polyprotein:T7401C(D2467D))|(ORF1a_polyprotein:T7401C(D2467D)) 1347 0.997 2 0.002 7455 0.967 3442 0.994 682 0.777 7530 0.995 5790 0.955 132 0.045 3969 0.52 2131 0.993 4017 0.996 167 0.046 2261 0.996 13878 0.889 16024 0.899 3213 0.995 6 1 6849 0.995 6207 0.76 2182 0.762 5598 0.995 21709 0.995 22 17.573 0 17.573
7998 C7998T|(ORF1ab_polyprotein:C7733T(S2578F))|(ORF1a_polyprotein:C7733T(S2578F)) 3 0.002 298 0.002 2843 0.373 31 0.014 39 0.013 2268 0.385 803 0.408 22 0.016 134 0.021 32 0.395 998 0.361 10 0.015 1596 0.413 245 0.015 4 0.002 25 0.017 16 2.433 0.019 2.452
8240 C8240T|(ORF1ab_polyprotein:C7975T(H2659Y))|(ORF1a_polyprotein:C7975T(H2659Y)) 71 0.645 5 0.004 2 0.002 492 0.751 385 0.972 210 0.901 951 0.403 191 0.255 167 0.454 116 0.167 135 0.184 229 0.991 123 0.128 221 0.094 2 0.053 452 0.978 94 0.11 178 0.736 513 0.248 19 8.076 0 8.076
8424 C8424T|(ORF1ab_polyprotein:C8159T(S2720L))|(ORF1a_polyprotein:C8159T(S2720L)) 15650 0.357 6819 0.366 127 0.005 208 0.005 13671 0.397 55 0.006 151 0.007 346 0.384 5398 0.356 11 0.006 27 0.003 7949 0.383 341 0.005 15 0.017 25 0.004 36 0.008 16 2.28 0.029 2.30899999999999
8841 C8841T|(ORF1ab_polyprotein:C8576T(T2859I))|(ORF1a_polyprotein:C8576T(T2859I)) 4 0.002 2361 0.217 1347 0.649 5935 0.62 1792 0.088 678 0.174 2529 0.302 10830 0.545 12 0.003 843 0.161 998 0.546 6170 0.481 7427 0.259 6469 0.267 169 0.344 4220 0.992 4565 0.474 132 0.089 220 0.057 20339 0.857 20 7.127 0 7.127
8843 A8843G|(ORF1ab_polyprotein:A8578G(R2860G))|(ORF1a_polyprotein:A8578G(R2860G)) 653 0.06 2988 0.312 10837 0.546 170 0.346 2973 0.699 8995 0.379 6 2.342 0 2.342
8969 C8969G|(ORF1ab_polyprotein:C8704G(L2902V))|(ORF1a_polyprotein:C8704G(L2902V)) 52 0.116 590 0.398 296 0.378 59 0.081 117 0.235 14 0.021 79 0.126 143 1 185 0.361 31 0.064 236 0.107 2 0.001 12 2.887 0.001 2.888
9042 C9042T|(ORF1ab_polyprotein:C8777T(S2926F))|(ORF1a_polyprotein:C8777T(S2926F)) 397 0.886 83 0.135 2 0.002 729 0.525 15 0.577 450 0.612 52 0.072 595 0.552 48 1 12 0.036 332 0.749 240 0.369 328 0.168 5 0.833 121 0.258 35 0.068 422 0.932 147 0.073 18 7.847 0 7.847
9092 G9092T|(ORF1ab_polyprotein:G8827T(V2943F))|(ORF1a_polyprotein:G8827T(V2943F)) 3 0.001 397 0.846 2 0.001 7 0.002 5 0.001 12 0.001 198 0.012 15 0.577 193 0.105 595 0.536 5 0.009 104 0.222 92 0.09 4 0.002 3 0.001 13 0.001 16 2.403 0.004 2.407
9203 Delta G9203A|(ORF1ab_polyprotein:G8938A(D2980N))|(ORF1a_polyprotein:G8938A(D2980N)) 2 0.002 5336 0.352 1118 0.997 2704 0.37 7922 0.279 4470 0.299 1423 0.137 1205 0.997 4638 0.341 5447 0.144 386 0.663 7272 0.998 5146 0.422 1334 0.996 504 0.796 26637 0.873 16 8.666 0 8.666
9204 A9204G|(ORF1ab_polyprotein:A8939G(D2980G))|(ORF1a_polyprotein:A8939G(D2980G)) 75 0.023 349 0.762 1574 0.999 14945 0.526 1052 0.07 344 0.025 25300 0.668 1970 0.162 8 3.235 0 3.235
9440 T9440A|(ORF1ab_polyprotein:T9175A(C3059S))|(ORF1a_polyprotein:T9175A(C3059S)) 2230 0.966 28 0.002 17 0.002 4203 0.626 3354 0.859 9305 0.383 580 0.069 2430 0.292 3846 0.677 3219 0.955 663 0.133 2725 0.132 1317 0.058 497 0.391 1160 0.509 1024 0.222 3818 0.099 17 6.375 0 6.375
9711 C9711T|(ORF1ab_polyprotein:C9446T(S3149F))|(ORF1a_polyprotein:C9446T(S3149F)) 423 0.108 153 0.155 368 0.093 78 0.211 136 0.031 30 0.012 232 0.181 335 0.057 116 0.014 920 0.649 306 0.047 139 0.244 514 0.199 2626 0.317 14 2.318 0 2.318
9806 T9806G|(ORF1ab_polyprotein:T9541G(C3181G))|(ORF1a_polyprotein:T9541G(C3181G)) 193 0.003 218 0.108 911 0.911 129 0.483 456 0.158 115 0.03 347 0.161 99 0.232 389 0.44 486 0.189 838 0.165 6 1 340 0.752 39 0.975 670 0.209 28 0.029 2396 0.537 17 6.382 0 6.382
9867 T9867C|(ORF1ab_polyprotein:T9602C(L3201P))|(ORF1a_polyprotein:T9602C(L3201P)) 424 0.995 82 0.001 1673 0.862 130 0.502 990 0.359 1934 0.51 96 0.111 183 0.085 15 0.037 550 0.986 102 0.102 452 0.54 532 0.207 2837 0.559 188 0.332 380 0.119 47 0.242 882 0.945 585 0.138 19 7.632 0 7.632
9967 C9967G|(ORF1ab_polyprotein:C9702G(L3234L))|(ORF1a_polyprotein:C9702G(L3234L)) 11 0.002 17367 0.737 1008 0.108 9070 0.98 24724 0.62 7618 0.227 2474 0.057 115 0.002 18051 0.977 2219 0.202 9216 0.177 40118 0.333 36363 0.556 4591 0.818 21898 0.162 14772 0.405 4349 0.038 17 6.401 0 6.401
10831 T10831A|(ORF1ab_polyprotein:T10566A(I3522I))|(ORF1a_polyprotein:T10566A(I3522I)) 382 0.139 6 0.001 3739 0.512 289 0.037 381 1 2710 0.781 746 0.085 868 0.046 368 0.041 1056 0.079 2588 0.971 1051 0.184 2057 0.159 3186 0.249 3207 0.185 2027 0.986 24 0.119 1065 0.378 1085 0.302 1714 0.137 86 0.26 1111 0.672 8525 0.334 2 0.001 24 7.657 0.001 7.658
11294 T11294A|(ORF1ab_polyprotein:T11029A(F3677I))|(ORF1a_polyprotein:T11029A(F3677I)) 8 0.002 62 0.029 1226 0.002 1009 0.001 1211 0.001 1727 0.001 27 0.004 21 0.005 1357 0.089 1847 0.313 7 0.001 1036 0.078 2927 0.221 990 0.531 338 0.12 101 0.006 3715 0.17 32 0.086 3449 0.731 1085 0.112 19943 0.597 3 0.001 2 0.001 2 0.002 24 3.1 0.004 3.104
11345 C11345T|(ORF1ab_polyprotein:C11080T(L3694F))|(ORF1a_polyprotein:C11080T(L3694F)) 523 0.929 1957 0.966 1843 1 1085 0.707 576 0.998 4363 0.74 1226 0.346 1806 0.643 533 0.399 657 0.227 4430 0.999 63 0.148 615 0.448 2239 0.676 4229 0.666 67 0.657 754 0.711 1077 0.7 2032 0.541 2951 0.999 4707 0.965 21 14.465 0 14.465
11428 T11428G|(ORF1ab_polyprotein:T11163G(V3721V))|(ORF1a_polyprotein:T11163G(V3721V)) 8 0.001 64 0.001 98 0.058 2 0.001 33 0.006 27 0.007 386 0.03 10 0.001 24 0.003 2117 0.148 2787 0.771 120 0.026 112 0.006 11 0.001 32 0.08 4624 0.78 16 0.002 5 0.002 572 0.066 15586 0.505 2 0.003 2 0.003 22 2.495 0.006 2.501
11439 A11439G|(ORF1ab_polyprotein:A11174G(N3725S))|(ORF1a_polyprotein:A11174G(N3725S)) 1547 0.911 2377 0.186 21 0.017 264 0.663 1178 0.138 2752 0.317 6 2.232 0 2.232
linked 11450 C11450A|(ORF1ab_polyprotein:C11185A(Q3729K))|(ORF1a_polyprotein:C11185A(Q3729K)) 655 0.12 4 0.002 1547 0.911 5 0.001 2 0.001 9 0.002 25 0.001 11846 0.926 4879 0.733 3373 0.498 403 0.411 1186 0.127 5616 0.517 645 0.077 581 0.055 807 0.067 7049 0.494 470 0.13 63 0.014 142 0.113 4980 0.256 20197 0.643 5135 0.529 296 0.744 12 0.002 6177 0.724 4681 0.255 6347 0.731 4883 0.158 2 0.001 7 0.001 125 0.02 171 0.377 33 9.242 0.399 9.641
11558 T11558C|(ORF1ab_polyprotein:T11293C(Y3765H))|(ORF1a_polyprotein:T11293C(Y3765H)) 14549 0.593 4677 0.335 1418 0.092 2864 0.535 23 0.001 2506 0.283 697 0.028 790 0.039 380 0.051 818 0.022 14712 0.289 5966 0.429 4759 0.134 15033 0.698 7390 0.112 15 3.641 0 3.641
13643 C13643A|(ORF1ab_polyprotein:C13379A(S4460Y)) 5 0.001 2 0.002 215 0.096 4 0.002 592 0.057 101 0.001 664 0.001 691 0.001 451 0.001 637 0.001 1005 0.001 180 0.007 749 0.018 28 0.002 21 0.002 26 0.001 14476 0.198 1495 0.073 9398 0.288 4196 0.204 803 0.026 13810 0.293 3702 0.448 6226 0.204 4714 0.06 11878 0.162 315 0.195 1359 0.046 1493 0.854 1539 0.226 275 0.008 339 0.075 8055 0.211 31665 0.188 22 0.002 3 0.001 7 0.009 36 0.001 27 0.001 26 0.001 25 0.001 8 0.001 3 0.002 8 0.001 44 3.953 0.02 3.973
linked 13827 TGCTTTAAGGCATTTT13827-13842del|(ORF1ab_polyprotein:13563-13578del(4521fs)) 2 0.004 712 0.153 1288 0.443 504 0.505 669 0.506 1501 0.275 874 0.389 1576 0.819 105 0.055 2351 0.378 146 0.147 1272 0.527 1765 0.333 202 0.071 2099 0.344 9 0.07 1247 0.338 228 0.835 373 0.445 291 0.152 83 0.572 1500 0.442 5539 0.297 1771 0.999 24 8.1 0.999 9.099
13827 TGCTTTAAGGCATTTTG13827-13843del|(ORF1ab_polyprotein:13563-13579del(4521fs)) 45 0.034 51 0.095 754 0.162 8 0.008 2577 0.473 925 0.149 790 0.882 833 0.345 124 0.023 33 0.005 24 0.186 144 0.039 269 0.321 418 0.123 2672 0.143 15 2.988 0 2.988
13860 RATG13 C13860T|(ORF1ab_polyprotein:C13596T(D4532D)) 2 0.021 19 0.035 837 0.18 23 0.008 4 0.004 450 0.34 1714 0.314 645 0.287 681 0.353 105 0.055 689 0.111 147 0.148 907 0.376 1403 0.264 22 0.008 1949 0.319 25 0.194 1360 0.369 228 0.835 275 0.328 80 0.552 89 0.026 6225 0.333 23 5.46 0 5.46
13874 T13874C|(ORF1ab_polyprotein:T13610C(I4537T)) 8 0.067 515 0.111 24 0.008 753 0.138 105 0.055 123 0.124 344 0.143 666 0.126 22 0.008 2962 0.485 38 0.295 1712 0.464 180 0.215 6 0.041 279 0.082 5195 0.278 16 2.64 0 2.64
13883 C13883T|(ORF1ab_polyprotein:C13619T(T4540I)) 277 0.519 443 0.095 1082 0.372 110 0.11 19 0.003 411 0.217 102 0.114 212 0.088 571 0.108 1118 0.183 125 0.034 82 0.098 110 0.057 23 0.007 3358 0.18 15 2.185 0 2.185
13926 GT13926-13927del|(ORF1ab_polyprotein:13662-13663del(4554fs)) 15 0.028 416 0.093 22 0.008 3 0.003 227 0.175 774 0.156 83 0.038 649 0.352 110 0.059 1412 0.243 6 0.006 303 0.139 570 0.109 1696 0.312 30 0.234 1531 0.441 161 0.211 299 0.088 5570 0.338 19 3.033 0 3.033
13929 TG13929-13930del|(ORF1ab_polyprotein:13665-13666del(4555fs)) 62 0.115 428 0.096 429 0.33 444 0.09 658 0.299 133 0.138 12 0.006 612 0.117 109 0.039 929 0.171 450 0.13 179 0.098 74 0.556 48 0.014 1354 0.082 15 2.281 0 2.281
13930 G13930A|(ORF1ab_polyprotein:G13666A(D4556N)) 15 0.028 360 0.08 22 0.008 3 0.003 228 0.176 773 0.156 83 0.038 647 0.351 108 0.058 1415 0.243 6 0.006 300 0.138 657 0.125 11 0.004 1696 0.312 30 0.234 1434 0.413 159 0.208 251 0.074 5412 0.328 20 2.983 0 2.983
14173 TT14173-14174del|(ORF1ab_polyprotein:13909-13910del(4637fs)) 160 0.193 1378 0.136 1380 0.342 3693 0.248 72 0.047 4235 0.251 2276 0.206 231 0.034 228 0.02 10 0.204 747 0.218 1323 0.245 8039 0.155 13 2.299 0 2.299
14176 ACCTT14176-14180del|(ORF1ab_polyprotein:13912-13916del(4638fs)) 179 0.026 1344 0.133 355 0.088 20 0.013 3409 0.229 261 0.251 608 0.223 485 0.029 578 0.499 109 0.092 2976 0.269 1387 0.206 511 0.046 781 0.207 139 0.041 27 0.016 1758 0.325 13853 0.267 18 2.96 0 2.96
14320 T14320C|(ORF1ab_polyprotein:T14056C(Y4686H)) 2490 0.126 3 0.001 17 0.004 14 0.004 18542 0.469 91 0.006 332 0.994 5263 0.621 2549 0.093 9770 0.079 14 0.001 11 2.397 0.001 2.39799999999999
14335 G14335T|(ORF1ab_polyprotein:G14071T(V4691F)) 3 0.007 51 0.003 18 0.005 360 0.002 29 0.001 79 0.002 1417 0.001 1090 0.001 873 0.001 1379 0.001 1602 0.001 6 0.001 28 0.001 19 0.002 6 0.002 8 0.002 21 0.007 78 0.003 191 0.01 17641 0.469 17 0.002 393 0.016 8 0.002 14 0.001 156 0.031 84 0.002 29 0.002 294 0.99 4859 0.613 91 0.002 2557 0.099 432 0.004 48 0.003 13 0.001 14 0.001 6 0.004 40 0.003 25 0.001 31 0.003 5 0.007 2 0.001 13 0.001 20 0.002 12 0.001 24 0.002 52 0.001 46 2.286 0.031 2.317
14368 T14368C|(ORF1ab_polyprotein:T14104C(C4702R)) 666 0.078 964 0.053 18779 0.499 453 0.019 101 0.007 2803 0.115 1135 0.298 532 0.105 991 0.028 46 0.016 526 0.035 296 0.997 370 0.047 3650 0.141 32158 0.281 302 0.036 16 2.719 0.036 2.755
linked 14408 Delta C14408T|(ORF1ab_polyprotein:C14144T(P4715L)) 455 0.998 12790 0.655 706 1 107 0.027 220 1 178469 0.998 23599 0.998 321 0.128 232964 0.998 46117 0.997 1092757 0.996 1058493 0.998 797316 0.998 1011466 0.998 1481011 0.998 4855 0.998 24623 0.999 6954 0.816 2628 0.998 3153 0.913 3128 0.983 30691 0.997 11381 0.623 37577 0.998 8865 0.998 13103 0.984 21297 0.887 11609 0.906 3537 0.719 15407 0.992 14401 0.947 22459 0.918 2669 0.701 12228 0.983 4444 0.875 34085 0.949 43118 0.983 14691 0.997 1509 0.511 12938 0.867 295 0.993 6937 0.875 59932 0.998 871 0.715 19962 0.77 98153 0.858 16300 0.996 8890 0.998 2441 0.999 10653 0.998 1323 0.978 567 0.991 7559 0.998 35951 0.998 17677 0.999 15603 0.996 22398 0.999 11900 0.998 5120 0.989 692 0.999 82 0.953 12 1 1833 0.999 12 0.923 30347 0.999 2812 0.999 9855 0.999 12593 0.999 6291 0.746 1397 0.999 14667 0.999 314 0.994 2 1 49527 0.999 74 40.538 27.544 68.082
linked 15451 G15451A|(ORF1ab_polyprotein:G15187A(G5063S)) 1704 0.694 5242 0.501 4785 0.998 1239 0.94 1847 0.894 260328 0.998 10980 0.329 8307 0.998 20 0.005 34706 0.999 21709 0.518 2348 0.817 8238 0.999 6387 0.999 31024 0.998 2202 0.037 7895 0.108 6369 0.456 21370 0.406 16359 0.428 914 0.037 12381 0.206 10104 0.352 9988 0.242 12730 0.219 174 0.14 3538 0.089 1828 0.663 6350 0.521 6981 0.453 6719 0.151 119470 0.465 9082 0.999 2301 0.999 1490 0.698 601 1 220 1 82904 0.998 2259 0.999 2738 0.997 322 0.997 1308 0.998 8182 0.999 13 1 63 1 45 16.66 12.684 29.344
15536 CT15536-15537del|(ORF1ab_polyprotein:15272-15273del(5091fs)) 14542 0.19 7578 0.089 6113 0.317 19974 0.291 5609 0.13 16197 0.382 1149 0.08 924 0.031 19850 0.278 9647 0.281 13678 0.282 5360 0.065 13081 0.238 9892 0.218 1634 0.658 1526 0.1 793 0.042 6538 0.427 5189 0.09 117472 0.402 20 4.591 0 4.591
15737 TCAATA15737-15742del|(ORF1ab_polyprotein:TTCAATAGC15472-15480TGCdel(FNS5158-5160Cdel)) 4197 0.098 13452 0.239 2060 0.146 12286 0.179 2016 0.043 6629 0.339 34 0.002 966 0.04 9492 0.19 4330 0.214 5067 0.109 2244 0.024 18378 0.446 13 0.015 4603 0.187 798 0.458 2127 0.155 177 0.007 2435 0.31 4509 0.175 60457 0.378 21 3.754 0 3.754
15933 C15933T|(ORF1ab_polyprotein:C15669T(Y5223Y)) 1419 0.009 17064 0.407 20314 0.44 23794 0.293 10214 0.212 8080 0.454 522 0.024 1380 0.059 6029 0.145 179 0.028 429 0.047 8758 0.363 11154 0.223 5089 0.059 12721 0.333 292 0.239 10801 0.328 5556 0.373 461 0.016 2958 0.225 16210 0.505 82378 0.353 22 5.135 0 5.135
linked 15977 ATA15977-15979del|(ORF1ab_polyprotein:GATATC15712-15717GTCdel(DI5238-5239Vdel)) 1953 0.004 5022 0.321 6000 0.986 179 0.046 17175 0.504 2532 0.198 2278 0.729 1502 0.368 3024 0.454 222 0.208 6042 0.524 5770 0.524 582 0.03 229 0.372 4204 0.275 2518 0.556 3858 0.614 8086 0.443 69565 0.555 7982 0.999 20 7.711 0.999 8.71
16008 T16008G|(ORF1ab_polyprotein:T15744G(I5248M)) 4035 0.258 950 0.245 867 0.16 7062 0.207 2302 0.18 1081 0.265 2444 0.367 1204 0.109 3553 0.18 347 0.564 1943 0.127 766 0.169 3550 0.39 856 0.136 3850 0.211 33985 0.271 16 3.839 0 3.839
linked 16111 RATG13 C16111T|(ORF1ab_polyprotein:C15847T(L5283L)) 36 0.009 3094 0.455 14607 0.503 5781 0.332 3510 0.528 5153 0.549 30501 0.548 8297 0.353 2272 0.745 1157 0.108 3627 0.249 6258 0.126 1469 0.202 631 0.058 10357 0.748 10479 0.416 17114 0.359 488 0.563 14192 0.411 448 0.972 4195 0.849 7869 0.375 5583 0.549 17277 0.657 111303 0.611 1308 0.404 7270 0.993 27 11.275 1.397 12.672
20407 RATG13 T20407C|(ORF1ab_polyprotein:T20143C(F6715L)) 20 0.377 1147 0.999 3701 0.919 1020 0.277 3024 0.642 846 0.66 3760 0.607 569 0.198 973 0.114 599 0.228 113 0.079 1830 0.242 4262 0.491 438 0.267 131 0.612 2341 0.357 5341 0.769 627 0.062 18 7.9 0 7.9
20407 T20407G|(ORF1ab_polyprotein:T20143G(F6715V)) 614 0.226 810 0.659 691 0.132 4 0.002 134 0.033 596 0.127 343 0.268 15 0.002 456 0.146 906 0.63 1594 0.211 1455 0.167 455 0.277 1934 0.929 99 0.99 399 0.061 1130 0.163 3835 0.377 18 5.4 0 5.4
21633 T21633C|(surface_glycoprotein:T71C(L24S)) 26 0.002 1585 0.032 15712 0.308 9537 0.111 18582 0.397 2629 0.02 3138 0.997 3961 0.084 24388 0.282 26941 0.186 10 2.419 0 2.419
21758 CATGCTATA21758-21766del|(surface_glycoprotein:196-204del(HAI66-68del)) 170 0.337 116 0.028 90 1 382 0.797 121 0.024 18 0.021 62 0.031 1243 0.998 855 0.291 1609 0.082 159 0.633 1848 0.782 571 0.257 43 1 1144 0.364 2157 0.59 16 7.235 0 7.235
linked 21846 C21846T|(surface_glycoprotein:C284T(T95I)) 367 0.273 1084 0.502 724 0.834 6247 0.251 31 0.886 105538 0.333 5204 0.873 13681 0.977 17 0.006 48 0.001 167373 0.967 362795 0.733 445177 0.719 106 0.001 469756 0.708 663159 0.739 6057 0.999 31253 0.669 201 0.058 159 1 16022 0.302 174 0.024 719 0.233 24817 0.988 281 0.036 2325 0.84 3840 0.24 1825 0.797 49250 0.631 128 0.992 12 0.004 2294 0.349 2105 0.23 3572 0.997 398 0.048 1754 0.879 1728 0.265 718 0.03 2264 0.672 5139 0.946 35 0.015 2700 0.361 192 0.016 7012 0.583 9891 0.917 2079 0.66 4469 0.993 34682 0.998 36 0.8 2096 0.818 6158 0.628 3430 0.568 3371 0.888 23760 0.515 386 0.085 196 0.361 8102 0.998 196 0.594 3 0.75 12 0.003 3 0.01 116 0.007 10 0.003 76 0.004 64 22.007 10.6 32.607
21987 GTGTTT21987-21992del|(surface_glycoprotein:GGTGTTTAT424-432GATdel(GVY142-144Ddel)) 79 0.021 2173 0.852 3752 0.285 1691 0.984 13775 0.191 130 1 1576 0.348 1665 0.219 377 0.055 1638 0.857 1667 0.465 33 0.007 2080 0.663 2631 0.525 84 0.016 6510 0.821 16 7.309 0 7.309
21990 TTT21990-21992del|(surface_glycoprotein:GTTTAT427-432GATdel(VY143-144Ddel)) 2 0.001 10 0.003 23 0.009 58 0.004 21 0.012 34565 0.478 659 0.145 347 0.046 3452 0.999 20 0.003 34 0.018 12 0.003 397 0.082 14 0.004 1679 0.335 2502 0.487 3 0.008 145 0.017 96 0.012 2 0.012 63 0.006 16 0.004 39 0.004 23 2.666 0.026 2.69199999999999
22001 A22001G|(surface_glycoprotein:A439G(K147E)) 765 0.672 574 0.347 18308 0.741 682 0.218 193 0.524 5 2.502 0 2.502
22011 AAAGTTGGATGG22011-22022del|(surface_glycoprotein:AAAAGTTGGATGGAA448-462AAAdel(KSWME150-154Kdel)) 2179 0.855 1686 0.981 129 0.992 733 0.162 1656 0.866 362 0.101 423 0.135 51 0.01 4739 0.598 9 4.7 0 4.7
22016 T22016C|(surface_glycoprotein:T454C(W152R)) 228 0.05 3769 0.277 48360 0.658 1488 0.286 343 0.043 378 0.05 1305 0.262 474 0.075 1672 0.533 3627 0.663 2593 0.436 140 0.015 1730 0.182 13 3.53 0 3.53
22020 T22020C|(surface_glycoprotein:T458C(M153T)) 773 0.509 18321 0.736 204 0.044 4433 0.557 3436 0.378 5 2.224 0 2.224
22028 G22028C|(surface_glycoprotein:G466C(E156Q)) 2 0.002 2210 0.867 1715 0.626 130 1 739 0.142 1681 0.821 363 0.073 430 0.137 52 0.01 4888 0.515 10 4.193 0 4.193
22050 C22050T|(surface_glycoprotein:C488T(A163V)) 31 0.018 1190 0.501 393 0.062 682 0.218 9 0.034 327 0.635 49 0.008 360 0.674 633 0.067 9 2.217 0 2.217
22206 A22206G|(surface_glycoprotein:A644G(D215G)) 3 0.003 2 0.032 427 0.731 98 0.102 372 0.454 716 0.594 658 0.998 895 0.702 837 0.469 330 0.159 572 0.181 528 0.166 89 0.07 188 0.185 107 0.049 570 0.521 7 0.002 17 5.418 0 5.418
22304 T22304C|(surface_glycoprotein:T742C(Y248H)) 2 0.006 2 0.005 11 0.026 11 0.038 98 0.07 1032 0.599 3 1 2 0.001 3 0.004 555 0.674 3 0.002 260 0.114 12 2.539 0 2.539
22308 T22308C|(surface_glycoprotein:T746C(L249S)) 2 0.006 8 0.02 113 0.267 32 0.031 284 0.983 25 0.018 93 0.054 119 0.992 411 0.233 341 0.501 447 0.543 286 0.571 89 0.063 394 0.952 2097 0.917 4 0.003 16 6.151 0.003 6.154
22676 RATG13 G22676A|(surface_glycoprotein:G1114A(A372T)) 222 0.246 288 0.733 3 0.2 174 0.994 124 0.2 2379 0.794 322 0.333 225 0.401 168 0.084 399 0.162 4117 0.863 810 0.781 1438 0.611 1728 0.259 1571 0.577 274 0.213 37 0.296 568 0.667 1152 0.302 2444 0.62 613 0.108 21 9.444 0 9.444
22812 A22812C|(surface_glycoprotein:A1250C(K417T)) 3 0.111 329 0.487 164 0.383 7 0.012 160 0.183 201 0.646 1540 0.673 3940 0.375 267 0.648 2337 0.795 745 0.509 1147 0.466 3145 0.316 169 0.824 565 0.15 758 0.098 2681 0.325 1409 0.865 251 0.041 3358 0.62 8148 0.514 16829 0.791 187 0.156 15 0.017 6 1 1163 0.456 4697 0.631 286 0.276 2133 0.189 3284 0.268 30 12.825 0 12.825
22874 T22874C|(surface_glycoprotein:T1312C(S438P)) 55 0.04 18 0.004 15 0.004 2600 0.221 130 0.241 378 0.08 1648 0.224 33 0.017 1806 0.191 1796 0.14 267 0.036 1613 0.232 3241 0.178 1032 0.531 752 0.809 3323 0.966 677 0.267 5257 0.438 6440 0.61 3 0.002 20 5.229 0.002 5.231
22891 22891-insertTTTTCCACT|(surface_glycoprotein:TCT1327-1329TCTTTTCCACTTinsert(S443SFPL)) 422 0.036 258 0.055 1391 0.189 33 0.017 1456 0.113 621 0.089 612 0.034 412 0.212 3322 0.965 572 0.225 4409 0.417 11 2.352 0 2.352
22907 T22907C|(surface_glycoprotein:T1345C(Y449H)) 27 0.185 640 0.255 992 0.736 265 0.058 4417 0.377 267 0.495 125 0.027 3042 0.414 1771 0.911 6332 0.493 650 1 1110 0.16 1720 0.095 104 0.003 528 0.272 16 0.017 409 0.161 134 0.007 290 0.2 3646 0.311 1607 0.152 5 0.014 22 6.329 0.014 6.343
22910 A22910G|(surface_glycoprotein:A1348G(N450D)) 107 0.615 1015 0.252 532 0.346 56 0.384 1241 0.921 4719 0.402 408 0.757 2145 0.455 1154 0.379 5059 0.688 2355 0.128 1769 0.91 315 0.03 478 0.051 4702 0.366 650 1 4506 0.648 5331 0.293 12358 0.411 528 0.272 16 0.017 1639 0.647 2634 0.145 290 0.2 3983 0.339 1637 0.156 26 10.812 0 10.812
22911 A22911C|(surface_glycoprotein:A1349C(N450T)) 13 0.003 12 0.003 1357 0.116 130 0.241 379 0.08 366 0.12 2276 0.31 32 0.016 87 0.008 1919 0.203 1810 0.141 1610 0.232 1748 0.096 1046 0.035 1048 0.54 753 0.811 2456 0.717 671 0.265 23 0.001 358 0.031 5755 0.548 3 0.004 22 4.517 0.004 4.521
linked 22917 Delta T22917G|(surface_glycoprotein:T1355G(L452R)) 67 0.385 2697 0.671 2866 0.996 736 0.479 145 0.993 25552 0.996 1332 0.531 3073 0.996 1189 0.892 55 1 3070 0.833 833 0.826 1223 0.27 3961 0.823 2819 0.836 12963 0.995 6865 0.607 539 1 2516 0.534 1513 0.497 7329 0.998 7406 0.404 1802 0.928 2376 0.229 2596 0.275 6507 0.506 650 1 262 0.036 6090 0.879 10614 0.587 19650 0.655 1577 0.812 929 1 2069 0.682 2 0.059 2452 0.975 8001 0.44 287 0.198 8987 0.766 8306 0.823 1920 0.99 788 1 686 0.139 74 0.974 46 1 194 1 5033 0.997 979 0.997 258 1 50 0.893 265 0.996 103 1 362 0.989 9 0.9 570 1 55 27.412 13.875 41.287
22942 T22942-22942del|(surface_glycoprotein:1380-1380del(460fs)) 615 0.066 370 0.081 1994 0.282 659 0.081 1460 0.119 405 0.072 2079 0.126 1027 0.529 2022 0.933 99 0.053 64 0.004 20 0.003 2268 0.367 13 2.716 0 2.716
22942 T22942G|(surface_glycoprotein:T1380G(N460K)) 106 0.62 1081 0.269 797 0.519 16 0.016 461 0.152 5182 0.285 129 0.068 662 0.082 237 0.034 2790 0.17 5847 0.198 363 0.187 90 0.042 32 0.941 149 0.08 6197 0.344 1233 0.2 17 4.207 0 4.207
22946 AAACCTTTTGAGAGAGATATTTCAACTGAAATCTATCAGGCCGGTAGCACACCTTGTAATGGTGTTGAAGGTTTTAATTGTTACTT22946-23031del|(surface_glycoprotein:1384-1469del(462fs)) 618 0.158 370 0.149 1993 0.355 659 0.161 1460 0.164 405 0.119 2079 0.237 1027 0.552 2022 0.959 100 0.132 64 0.005 20 0.005 2271 0.579 13 3.57499999999999 0 3.57499999999999
23039 C23039A|(surface_glycoprotein:C1477A(Q493K)) 103 0.904 991 0.291 782 0.512 56 0.418 40 0.002 6 0.002 1026 0.96 611 0.168 232 0.654 6 0.002 5 0.009 2 0.003 22 0.002 3261 0.807 142 1 186 0.074 180 0.085 3571 0.632 2288 0.224 1686 0.994 1868 0.228 1009 0.246 7350 0.655 234 0.076 2959 0.864 3095 0.35 314 0.026 822 0.437 84 0.031 25 0.926 651 0.862 358 0.025 4239 0.908 683 0.132 5 0.003 6 0.001 7 0.002 8 0.001 3 0.003 3 0.003 3 0.001 3 0.001 12 0.001 43 13.509 0.016 13.525
23045 T23045A|(surface_glycoprotein:T1483A(Y495N)) 7 0.007 741 0.183 379 0.152 2033 0.36 379 0.093 3791 0.338 231 1 430 0.126 1250 0.141 1043 0.554 7 0.043 2633 0.967 100 0.132 390 0.084 3511 0.678 15 4.858 0 4.858
linked 23052 T23052C|(surface_glycoprotein:T1490C(F497S)) 8 0.002 1021 0.063 380 0.067 2037 0.165 670 0.088 3796 0.149 231 1 433 0.051 2150 0.098 1045 0.556 7 0.021 2637 0.968 100 0.024 394 0.017 3522 0.467 12 0.164 16 3.736 0.164 3.9
23055 A23055T|(surface_glycoprotein:A1493T(Q498L)) 11 0.003 5 0.001 6 0.001 30 0.002 1022 0.063 383 0.068 2042 0.165 9 0.002 15 0.001 673 0.088 3807 0.149 230 0.996 439 0.052 2160 0.099 598 0.024 1045 0.556 7 0.021 2634 0.967 100 0.024 849 0.039 2 0.001 399 0.018 3521 0.467 6 0.002 10 0.002 2 0.004 6 0.003 27 3.807 0.011 3.818
linked 23063 A23063T|(surface_glycoprotein:A1501T(N501Y)) 146 0.93 3937 0.62 801 0.224 1407 0.652 375 0.822 34010 0.6 4620 0.908 8325 0.755 4164 0.989 135896 0.983 25273 0.987 379333 0.969 423667 0.965 342278 0.975 450753 0.965 559650 0.965 5258 0.634 8770 0.984 194 0.919 2488 0.716 3326 0.857 4213 0.86 1125 0.083 15163 0.934 3873 0.997 5214 0.922 2586 0.55 10258 0.83 9758 0.566 4899 0.994 2275 0.217 5242 0.686 21651 0.848 6938 0.88 7985 0.939 16601 0.758 13317 0.541 486 0.258 175 0.516 4055 0.972 10370 0.478 1598 0.995 22251 0.979 3577 0.474 1995 0.569 1481 0.935 900 0.827 4463 0.868 63 0.492 30 0.411 2 0.01 9367 0.987 11626 0.988 12813 0.979 3647 0.99 2403 0.995 1441 0.234 1641 0.773 8 0.19 188 1 339 0.997 241 0.467 3 0.5 3506 0.993 5997 0.434 5543 0.829 4 0.007 1047 0.995 685 0.448 3392 0.989 4704 0.735 2111 0.972 1512 0.516 2001 0.426 23530 0.933 75 33.696 21.489 55.185
23069 G23069A|(surface_glycoprotein:G1507A(V503I)) 7 0.002 1019 0.063 104 0.018 2036 0.165 269 0.035 3793 0.149 231 1 432 0.051 1176 0.054 1049 0.558 7 0.021 2636 0.967 100 0.024 391 0.017 3525 0.467 15 3.591 0 3.591
23079 A23079C|(surface_glycoprotein:A1517C(Q506P)) 8 0.002 919 0.057 1873 0.151 3788 0.148 231 1 398 0.212 7 0.021 2132 0.782 393 0.017 2679 0.355 10 2.745 0 2.745
23248 C23248T|(surface_glycoprotein:C1686T(F562F)) 24767 0.728 10399 0.975 44720 0.994 634 0.959 1693 0.587 5 4.243 0 4.243
23274 A23274G|(surface_glycoprotein:A1712G(D571G)) 205 0.425 3104 0.945 7 0.001 12164 0.847 1144 0.303 2872 0.942 6162 0.896 4999 0.584 2791 0.867 980 0.296 102 0.019 13645 0.88 4638 0.774 6786 0.416 7393 0.459 165 0.203 3147 0.846 1877 0.213 16547 0.744 1841 0.254 20 10.914 0 10.914
23280 C23280T|(surface_glycoprotein:C1718T(T573I)) 59 0.018 1623 0.113 111 0.029 152 0.022 25 0.008 1199 0.222 290 0.019 237 0.044 864 0.144 1381 0.085 29 0.002 37 0.023 619 0.763 1092 0.673 429 0.116 1181 0.134 4418 0.199 3006 0.416 14 0.031 19 3.03 0.031 3.061
linkedubiq 23403 Delta A23403G|(surface_glycoprotein:A1841G(D614G)) 54 0.982 487 1 785 0.999 76 1 164 1 22469 0.996 4486 0.998 3388 0.997 78 1 12864 0.999 13794 0.996 53744 0.996 119177 0.995 45397 0.996 93644 0.996 120935 0.994 12 1 2674 0.997 3385 0.994 2 1 356 0.994 132 0.957 198 0.947 4825 0.998 1212 0.998 116 0.991 167 1 375 1 553 1 1576 0.997 66 1 1045 0.998 685 0.999 1036 0.683 219 1 398 0.995 464 0.994 1865 0.998 3686 0.999 1609 0.999 17 1 570 1 62 1 117 1 1342 0.994 70 0.986 371 1 2097 0.999 3107 0.996 152 1 76 1 351 0.994 35 0.972 6 1 1101 0.996 987 1 2006 0.997 2596 0.997 837 0.996 5890 0.993 492 0.996 183 0.995 86 0.989 6 1 327 0.997 190 0.995 788 0.997 22 0.957 52 1 41 1 102 1 1023 0.996 451 0.996 21 1 814 1 933 0.999 76 47.461 27.858 75.319
23444 C23444A|(surface_glycoprotein:C1882A(Q628K)) 3 0.001 3 0.002 2 0.001 11 0.001 33 0.001 108857 0.988 258603 0.98 238109 0.988 264452 0.99 3 0.002 13 0.001 5 0.002 12 0.002 2 0.002 4 0.002 3 0.001 2 0.002 17 3.957 0.009 3.96599999999999
23485 T23485A|(surface_glycoprotein:T1923A(N641K)) 2 0.003 86 0.047 20 0.001 43 0.04 55 0.001 14 0.002 11 0.001 105 0.014 2791 0.143 4345 0.297 190 0.945 43 0.007 593 0.41 1237 0.784 4446 0.315 3 0.001 19 0.001 5 0.001 18 3.01 0.003 3.013
linked 23525 C23525T|(surface_glycoprotein:C1963T(H655Y)) 67 0.03 540 0.882 6332 0.454 13621 0.998 27729 0.996 58442 0.996 148264 0.997 70014 0.993 150239 0.997 151228 0.997 447 0.106 377 1 2749 0.421 44 0.002 14 0.001 10 0.002 10 0.303 2 0.002 730 0.171 24 0.002 672 0.999 544 0.703 14 0.933 755 0.995 1627 0.996 1179 0.996 13739 0.996 134 0.02 28 10.35 6.638 16.988
linked 23599 T23599G|(surface_glycoprotein:T2037G(N679K)) 17 0.001 4 0.001 6 0.003 283 0.004 6232 0.408 55 0.004 103863 0.496 27169 0.991 350428 0.515 467134 0.568 280502 0.541 414595 0.583 612637 0.541 464 0.043 72 0.004 394 0.929 9 0.002 283 0.029 272 0.029 114 0.002 46 0.001 46 0.003 13 0.003 206 0.006 41 0.003 13 0.004 105 0.004 90 0.005 156 0.002 8 0.001 51 0.001 26 0.005 38 0.001 165 0.002 33 0.006 2594 0.534 543 0.702 14 1 3783 0.526 10511 0.518 12327 0.473 13490 0.993 2893 0.471 88 0.005 25 0.009 13 0.007 43 0.009 3 0.013 3 0.011 4 0.009 49 0.002 51 5.735 5.288 11.023
linked 23604 C23604A|(surface_glycoprotein:C2042A(P681H)) 2 0.001 6861 0.449 13524 0.065 26770 0.976 57833 0.085 146577 0.178 69591 0.134 149049 0.209 147945 0.13 446 0.042 1725 0.099 376 0.887 22 0.004 35 0.002 955 0.061 1209 0.074 1489 0.037 70 0.002 2121 0.427 668 0.137 543 0.702 14 1 750 0.104 1609 0.079 1174 0.045 13533 0.996 16 0.001 269 0.996 535 0.021 906 0.021 461 0.994 3953 0.168 32 3.862 5.264 9.126
23664 C23664T|(surface_glycoprotein:C2102T(A701V)) 616460 0.911 665705 0.817 552332 0.788 971462 0.863 4 3.379 0 3.379
linked 23854 C23854A|(surface_glycoprotein:C2292A(N764K)) 10 0.002 2321 0.322 15 0.001 319648 0.996 32955 0.999 1108172 0.993 960223 0.994 733761 0.995 1027249 0.994 1626551 0.994 6 0.001 11 0.002 47 1 21 0.002 31 0.002 26 0.002 12439 0.998 2933 0.327 7033 0.993 21738 0.995 31125 0.994 17770 0.999 6089 0.994 5 0.002 3 0.001 25 8.297 6.305 14.602
23895 C23895T|(surface_glycoprotein:C2333T(T778I)) 3359 0.276 1737 0.338 11686 0.337 493 0.998 372 0.031 4563 0.507 987 0.046 19437 0.51 8610 0.175 71 0.014 7246 0.179 19193 0.264 12 3.675 0 3.675
23898 A23898T|(surface_glycoprotein:A2336T(Q779L)) 170 0.01 3355 0.275 1739 0.339 11671 0.337 492 0.996 374 0.031 4554 0.506 988 0.046 20555 0.539 8601 0.175 73 0.014 8792 0.217 12385 0.197 19176 0.264 14 3.946 0 3.946
24044 C24044T|(surface_glycoprotein:C2482T(L828F)) 50 0.018 2525 0.39 2426 0.6 15 0.139 4967 0.813 910 0.076 24692 0.948 15185 0.998 8051 0.974 41286 0.997 9506 0.345 7855 0.998 2241 0.195 3867 0.217 13143 0.999 1194 1 1429 0.054 12539 0.931 39055 0.751 55466 0.816 11473 0.999 593 0.31 2292 0.341 384 0.169 17821 0.998 34815 0.693 12 0.002 62272 0.999 81518 0.982 2058 0.153 30 17.752 0.153 17.9049999999999
24122 A24122G|(surface_glycoprotein:A2560G(K854E)) 566 0.158 3944 0.705 3 0.002 5 0.001 7140 0.673 414 0.098 795 0.076 308 0.051 2124 0.439 1205 0.082 280 0.354 1251 0.282 12 0.444 3740 0.914 14 4.279 0 4.279
25020 A25020C|(surface_glycoprotein:A3458C(D1153A)) 5689 0.45 2830 0.922 815 0.047 2797 0.151 10557 0.815 464 0.034 11284 0.467 20669 0.645 9037 0.995 3819 0.107 3313 0.15 3532 0.457 3426 0.483 7575 0.405 21016 0.543 24479 0.48 22634 0.271 342 0.05 265 0.229 6171 0.622 856 0.94 1618 0.516 22868 0.388 1241 0.497 11746 0.605 77136 0.973 26 12.242 0 12.242
25088 G25088T|(surface_glycoprotein:G3526T(V1176F)) 1465 0.214 72 1 2 0.25 33723 0.252 1229 0.923 7782 0.016 683 0.055 9404 0.512 1434 0.997 3568 0.528 5007 0.137 1286 0.442 4078 0.28 2 0.001 14 5.606 0.001 5.607
25104 A25104T|(surface_glycoprotein:A3542T(K1181I)) 7163 0.812 12671 0.423 7322 0.988 3302 0.113 1966 0.166 1236 0.115 11591 0.351 1381 0.023 743 0.3 8152 0.163 36086 0.539 11 3.993 0 3.993
25116 G25116A|(surface_glycoprotein:G3554A(R1185H)) 2 0.25 691 0.525 3648 0.39 20 0.003 56 0.005 1041 0.084 914 0.104 8603 0.733 9414 0.513 75 0.01 3224 0.11 1439 1 5992 0.887 1754 0.164 8239 0.226 5985 0.181 35112 0.582 1196 0.483 1289 0.443 14730 0.295 4080 0.28 2137 0.032 2 0.001 2 0.001 24 7.3 0.002 7.302
25163 C25163A|(surface_glycoprotein:C3601A(Q1201K)) 726 0.106 2 0.001 69 0.972 201 0.002 3 0.001 31 0.005 173 0.13 773 0.049 15 0.002 282 0.04 403 0.036 15 0.001 2613 0.216 56 0.007 108 0.006 80 0.011 1389 0.992 3083 0.469 215 0.006 256 0.329 1872 0.776 5 0.007 11 0.004 12 0.007 10092 0.716 28518 0.456 4 0.002 2 0.002 9 0.002 4 0.001 5 0.003 24 0.007 6 0.005 51 0.007 34 5.34699999999999 0.029 5.37599999999999
25254 C25254T|(surface_glycoprotein:C3692T(T1231I)) 543 0.039 184 0.249 201 0.037 1467 0.002 3762 0.126 16173 0.569 12122 0.894 18151 0.762 3097 0.185 23054 0.596 20475 0.391 19166 0.827 3264 0.071 7727 0.21 22863 0.547 17916 0.836 11715 0.403 23623 0.526 38790 0.418 47258 0.29 19878 0.474 253 0.169 12265 0.998 690 0.993 8750 0.866 15030 0.173 1172 0.206 20107 0.603 116756 0.945 29 13.405 0 13.405
25437 GAAGCA25437-25442del|(ORF3a_protein:TTGAAGCAA43-51TTAdel(LKQ15-17Ldel)) 439 0.568 3887 0.942 9752 0.54 5870 0.268 17986 0.443 3971 0.377 2056 0.033 23464 0.596 345 0.478 88 0.013 130 0.033 5150 0.27 5926 0.099 13 4.66 0 4.66
25449 A25449C|(ORF3a_protein:A57C(E19D)) 435 0.562 3880 0.941 798 0.001 5 0.001 55 0.011 71 0.008 9766 0.529 16 0.001 5893 0.269 18069 0.446 2397 0.228 16584 0.421 345 0.478 13 0.001 100 0.014 133 0.034 5183 0.272 4152 0.069 3 0.007 9 0.002 6 0.004 21 4.286 0.013 4.299
25505 A25505T|(ORF3a_protein:A113T(Q38L)) 68 1 1797 0.927 645 1 886 0.501 405 0.162 272 0.275 104 0.175 125 0.097 319 0.473 517 0.197 3299 0.409 26 1 409 0.455 289 0.997 342 0.233 463 1 1939 0.759 17 9.66 0 9.66
25563 G25563T|(ORF3a_protein:G171T(Q57H)) 72 0.847 97 0.001 137 0.002 3 0.002 1976 0.992 21 1 653 0.998 1782 0.993 1345 0.528 1010 0.991 189 0.314 224 0.17 99 0.99 83 0.093 325 0.477 1663 0.619 6661 0.813 26 1 1014 0.991 289 0.986 1127 0.75 468 0.998 2579 0.994 2 0.001 24 15.549 0.001 15.5499999999999
25922 G25922A|(ORF3a_protein:G530A(S177N)) 29 0.066 1071 0.881 1974 0.287 1286 0.24 65 0.97 1563 0.637 6 3.081 0 3.081
25936 C25936G|(ORF3a_protein:C544G(H182D)) 1553 0.397 376 1 29 0.066 1214 1 1414 0.372 6850 0.996 4361 0.996 5049 0.995 1674 0.686 9464 0.995 7792 0.99 3014 0.996 459 0.44 1215 0.296 2726 0.997 5329 0.996 587 0.181 1977 0.573 7587 0.683 9821 0.931 67 1 1014 0.997 388 0.995 1979 0.995 4890 0.69 179 0.131 2447 0.998 21105 0.995 28 21.387 0 21.387
25979 G25979A|(ORF3a_protein:G587A(G196E)) 23 0.027 28 1 44 0.006 70 0.972 74 0.013 33 1 72 1 12 0.002 11 1 6 1 3 0.001 29 1 277 0.059 13 7.08 0 7.08
25991 G25991A|(ORF3a_protein:G599A(C200Y)) 1550 0.397 370 0.984 29 0.066 992 0.878 294 0.002 3046 0.471 4128 0.994 849 0.196 399 0.169 8121 0.987 66 0.023 2566 0.994 5033 0.992 502 0.171 584 0.054 3776 0.367 63 1 278 0.29 322 0.988 987 0.558 939 0.141 154 0.128 2327 0.996 12085 0.675 24 12.521 0 12.521
26129 T26129C|(ORF3a_protein:T737C(I246T)) 18 0.024 749 0.19 30 0.032 45 0.041 199 0.427 2600 0.553 147 0.35 293 0.075 209 0.031 877 0.074 65 0.048 233 0.687 156 0.062 317 0.301 3407 0.36 3 0.001 16 3.255 0.001 3.256
26157 TGTTAATCCAG26157-26167del|(ORF3a_protein:765-775del(255fs)) 95 0.888 692 0.935 2078 0.527 578 0.533 1695 0.361 442 0.202 88 0.052 62 0.148 332 0.085 7440 0.628 77 0.975 106 0.313 681 0.647 13 6.294 0 6.294
26171 T26171-26171del|(ORF3a_protein:779-779del(260fs)) 96 0.897 696 0.941 2079 0.527 580 0.535 1697 0.361 442 0.202 89 0.052 62 0.148 332 0.085 12 0.002 7445 0.628 77 0.975 106 0.313 682 0.648 61 0.006 15 6.32 0 6.32
26530 A26530C|(membrane_glycoprotein:A8C(D3A)) 3 0.001 6 0.001 214 0.611 8492 0.99 568 0.001 1605 0.001 206 0.015 128 0.009 15864 0.487 3985 0.538 12 0.129 8587 0.319 218 0.5 4516 0.972 435 0.989 31012 0.986 10724 0.66 21 0.001 18 0.001 11 0.001 20 7.209 0.003 7.212
26545 26545-insertTATCCGATT|(membrane_glycoprotein:ATT22-24ATATCCGATTTTinsert(I8ISDF)) 62 0.002 28 0.283 2 0.003 41 0.006 98 0.002 97 0.005 47 0.002 58 0.624 318 0.56 208 0.005 434 0.016 523 0.009 177 0.406 33 0.007 434 0.522 5 0.011 23 0.01 4416 0.272 18 2.745 0 2.745
26571 C26571G|(membrane_glycoprotein:C49G(L17V)) 93 0.007 91 0.006 88 0.003 414 0.679 33 0.004 154 0.003 482 0.024 572 0.018 255 0.449 327 0.008 453 0.017 1591 0.028 880 0.014 180 0.413 693 0.834 1785 0.094 3299 0.203 17 2.804 0 2.804
26813 T26813A|(membrane_glycoprotein:T291A(I97I)) 31 0.001 2 0.001 27 0.009 21 0.008 6 0.001 1036 0.167 970 0.987 475 0.975 3 0.001 2553 0.455 613 0.195 186 0.061 2191 0.988 149 0.026 289 0.029 295 0.024 119 0.617 501 0.374 166 0.254 347 0.043 163 0.591 5796 0.569 3 0.002 13 0.001 5 0.001 2 0.005 2 0.004 6 0.002 28 6.376 0.015 6.391
27383 ATTA27383-27386del|(ORF6_protein:182-185del(61fs)) 421 0.861 513 0.4 90 0.407 1090 0.993 194 0.601 171 0.361 18 0.131 102 0.99 3107 0.478 236 0.072 10 5.294 0 5.294
27568 T27568A|(ORF7a_protein:T175A(F59I)) 697 0.019 874 0.149 2709 0.989 877 0.074 3113 0.222 2283 0.071 2149 0.422 3550 0.425 1268 0.075 19703 0.191 10 2.637 0 2.637
27621 G27621T|(ORF7a_protein:G228T(Q76H)) 500 0.002 52 0.001 150 0.001 745087 0.558 1087094 0.535 1602 0.002 979994 0.532 1353579 0.596 79 0.002 14 0.002 29 0.002 46 0.002 27 0.001 24 0.002 123 0.002 68 0.001 2 0.001 17 2.236 0.006 2.242
27739 C27739A|(ORF7a_protein:C346A(L116I)) 138 0.673 16176 0.965 103 0.002 26323 0.62 8156 0.46 1173 0.044 23532 0.955 8108 0.316 1694 0.021 1002 0.012 11284 0.383 1497 0.429 4302 0.062 33854 0.777 2252 0.028 15 5.747 0 5.747
28273 A28273T 3 0.002 8501 0.423 38 0.003 3044 0.718 596 0.397 407 0.002 56 0.002 21935 0.916 207 0.002 336 0.003 1104 0.003 1401 0.002 991 0.002 1177 0.002 1228 0.002 5 0.003 135 0.012 100 0.008 54 0.002 28082 0.556 6517 0.558 96 0.002 1483 0.052 688 0.035 7842 0.307 11654 0.761 259 0.016 3236 0.187 3877 0.091 788 0.009 12559 0.302 657 0.627 54 0.003 345 0.052 526 0.013 664 0.301 12020 0.528 1651 0.02 66 0.005 4 0.002 6 0.002 12 0.018 19 0.002 45 0.002 18 0.001 65 0.003 44 0.002 74 0.001 17 0.002 5 0.005 18 0.002 8 0.003 5 0.008 17 0.001 7 0.002 55 6.924 0.061 6.985
28321 G28321A|(nucleocapsid_phosphoprotein:G48A(T16T)) 184 0.039 233 0.42 198 0.169 540 0.348 32 0.003 33 0.003 2733 0.236 2226 0.461 269 0.139 677 0.152 155 0.039 470 0.088 223 0.991 175 0.042 726 0.104 306 0.056 2007 0.32 459 0.242 588 0.135 16974 0.67 3 0.003 21 4.657 0.003 4.66
28429 G28429A|(nucleocapsid_phosphoprotein:G156A(W52*)) 27 0.005 2057 0.053 153 0.021 4490 0.296 1681 0.234 20 0.002 516 0.047 515 0.027 10609 0.244 127 0.27 10873 0.577 114 0.037 967 0.276 2776 0.175 13402 0.23 15 2.49399999999999 0 2.49399999999999
28703 G28703C|(nucleocapsid_phosphoprotein:G430C(D144H)) 7 0.001 708 0.001 11102 0.277 2405 0.191 1049 0.088 6892 0.884 1046 0.077 768 0.011 3410 0.813 133 0.008 9064 0.166 11 2.517 0 2.517
28715 A28715G|(nucleocapsid_phosphoprotein:A442G(T148A)) 1703 0.244 6132 0.913 9162 0.322 5416 0.431 1306 0.109 840 0.108 4094 0.376 1326 0.098 710 0.01 66 0.93 794 0.27 1529 0.408 4613 0.53 4412 0.081 14 4.83 0 4.83
28742 A28742G|(nucleocapsid_phosphoprotein:A469G(I157V)) 96 0.014 2445 0.086 16168 0.403 401 0.249 6394 0.509 2596 0.116 2020 0.243 2128 0.177 6954 0.892 168 1 178 0.016 1664 0.153 4585 0.338 18409 0.269 4183 0.997 658 0.224 8639 0.511 3703 0.425 48535 0.886 19 7.508 0 7.508
29296 C29296T|(nucleocapsid_phosphoprotein:C1023T(D341D)) 1741 0.063 451 0.118 9259 0.862 560 0.047 204 0.018 14585 0.239 15767 0.487 5244 0.598 7112 0.133 2027 0.175 45864 0.824 3297 0.463 631 0.032 2722 0.173 4132 0.171 7000 0.046 15564 0.205 176 0.27 7939 0.266 24272 0.518 8502 0.079 21 5.787 0 5.787